data_9D4W
#
_model_server_result.job_id            6sJXhnx7PBpKCqffslb4Ew 
_model_server_result.datetime_utc      '2025-04-24 01:18:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    9D4W 
#
_exptl.entry_id    9D4W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              372.412 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.555 
_cell.angle_gamma         90 
_cell.entry_id            9D4W 
_cell.length_a            62.792 
_cell.length_b            81.432 
_cell.length_c            65.622 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H19 F3 N6 S' 
_chem_comp.formula_weight    372.412 
_chem_comp.id                A1A2Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~-{[(1s,4s)-4-aminocyclohexyl]methyl}-N~4~-[5-(trifluoromethyl)-1,3-thiazol-2-yl]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N01 C02 A1A2Q sing 1 n n 
F21 C18 A1A2Q sing 2 n n 
C04 C03 A1A2Q sing 3 n n 
C04 C05 A1A2Q sing 4 n n 
C03 C02 A1A2Q sing 5 n n 
C02 C25 A1A2Q sing 6 n n 
C06 C05 A1A2Q sing 7 n n 
C06 N07 A1A2Q sing 8 n n 
F20 C18 A1A2Q sing 9 n n 
C18 F19 A1A2Q sing 10 n n 
C18 C17 A1A2Q sing 11 n n 
C05 C24 A1A2Q sing 12 n n 
C24 C25 A1A2Q sing 13 n n 
N07 C08 A1A2Q sing 14 n n 
C17 S22 A1A2Q sing 15 n y 
C17 C16 A1A2Q doub 16 n y 
S22 C14 A1A2Q sing 17 n y 
C08 N23 A1A2Q doub 18 n y 
C08 N09 A1A2Q sing 19 n y 
N23 C12 A1A2Q sing 20 n y 
C16 N15 A1A2Q sing 21 n y 
N09 C10 A1A2Q doub 22 n y 
C14 N15 A1A2Q doub 23 n y 
C14 N13 A1A2Q sing 24 n n 
C12 N13 A1A2Q sing 25 n n 
C12 C11 A1A2Q doub 26 n y 
C10 C11 A1A2Q sing 27 n y 
C10 H1 A1A2Q sing 28 n n 
C24 H2 A1A2Q sing 29 n n 
C24 H3 A1A2Q sing 30 n n 
N01 H4 A1A2Q sing 31 n n 
N01 H5 A1A2Q sing 32 n n 
C02 H7 A1A2Q sing 33 n n 
C03 H8 A1A2Q sing 34 n n 
C03 H9 A1A2Q sing 35 n n 
C04 H10 A1A2Q sing 36 n n 
C04 H11 A1A2Q sing 37 n n 
C05 H12 A1A2Q sing 38 n n 
C06 H13 A1A2Q sing 39 n n 
C06 H14 A1A2Q sing 40 n n 
N07 H15 A1A2Q sing 41 n n 
C11 H16 A1A2Q sing 42 n n 
N13 H17 A1A2Q sing 43 n n 
C16 H18 A1A2Q sing 44 n n 
C25 H19 A1A2Q sing 45 n n 
C25 H20 A1A2Q sing 46 n n 
#
_atom_sites.entry_id                     9D4W 
_atom_sites.fract_transf_matrix[1][1]    0.015926 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004734 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01228 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1A2Q A 1 601 601 A1A2Q LIG . 
D 2 A1A2Q B 1 601 601 A1A2Q LIG . 
E 3 HOH A 1 701 27 HOH HOH . 
E 3 HOH A 2 702 29 HOH HOH . 
E 3 HOH A 3 703 13 HOH HOH . 
E 3 HOH A 4 704 21 HOH HOH . 
E 3 HOH A 5 705 28 HOH HOH . 
E 3 HOH A 6 706 14 HOH HOH . 
E 3 HOH A 7 707 9 HOH HOH . 
E 3 HOH A 8 708 1 HOH HOH . 
E 3 HOH A 9 709 23 HOH HOH . 
E 3 HOH A 10 710 24 HOH HOH . 
E 3 HOH A 11 711 5 HOH HOH . 
E 3 HOH A 12 712 7 HOH HOH . 
E 3 HOH A 13 713 22 HOH HOH . 
E 3 HOH A 14 714 10 HOH HOH . 
E 3 HOH A 15 715 6 HOH HOH . 
E 3 HOH A 16 716 17 HOH HOH . 
E 3 HOH A 17 717 8 HOH HOH . 
F 3 HOH B 1 701 3 HOH HOH . 
F 3 HOH B 2 702 12 HOH HOH . 
F 3 HOH B 3 703 31 HOH HOH . 
F 3 HOH B 4 704 16 HOH HOH . 
F 3 HOH B 5 705 19 HOH HOH . 
F 3 HOH B 6 706 11 HOH HOH . 
F 3 HOH B 7 707 26 HOH HOH . 
F 3 HOH B 8 708 15 HOH HOH . 
F 3 HOH B 9 709 20 HOH HOH . 
F 3 HOH B 10 710 30 HOH HOH . 
F 3 HOH B 11 711 2 HOH HOH . 
F 3 HOH B 12 712 25 HOH HOH . 
F 3 HOH B 13 713 4 HOH HOH . 
F 3 HOH B 14 714 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1A2Q . . . C 2 11.022 -13.967 17.801 1 50.1 ? C10 A1A2Q 601 A 1 
HETATM 2 C C17 A1A2Q . . . C 2 17.193 -15.869 15.241 1 49.85 ? C17 A1A2Q 601 A 1 
HETATM 3 C C24 A1A2Q . . . C 2 14.642 -10.182 15.172 1 55.55 ? C24 A1A2Q 601 A 1 
HETATM 4 N N01 A1A2Q . . . C 2 17.022 -8.82 13.744 1 50.99 ? N01 A1A2Q 601 A 1 
HETATM 5 C C02 A1A2Q . . . C 2 17.14 -9.732 14.915 1 57.38 ? C02 A1A2Q 601 A 1 
HETATM 6 C C03 A1A2Q . . . C 2 17.24 -11.227 14.422 1 52.69 ? C03 A1A2Q 601 A 1 
HETATM 7 C C04 A1A2Q . . . C 2 15.983 -11.632 13.66 1 43.57 ? C04 A1A2Q 601 A 1 
HETATM 8 C C05 A1A2Q . . . C 2 14.84 -11.63 14.672 1 48.86 ? C05 A1A2Q 601 A 1 
HETATM 9 C C06 A1A2Q . . . C 2 13.52 -12.142 14.063 1 50.16 ? C06 A1A2Q 601 A 1 
HETATM 10 N N07 A1A2Q . . . C 2 12.501 -12.148 15.116 1 54.42 ? N07 A1A2Q 601 A 1 
HETATM 11 C C08 A1A2Q . . . C 2 12.4 -13.126 16.145 1 51.95 ? C08 A1A2Q 601 A 1 
HETATM 12 N N09 A1A2Q . . . C 2 11.277 -13.109 16.84 1 49.47 ? N09 A1A2Q 601 A 1 
HETATM 13 C C11 A1A2Q . . . C 2 11.992 -14.919 18.06 1 54.65 ? C11 A1A2Q 601 A 1 
HETATM 14 C C12 A1A2Q . . . C 2 13.158 -14.931 17.273 1 55.2 ? C12 A1A2Q 601 A 1 
HETATM 15 N N13 A1A2Q . . . C 2 14.123 -15.92 17.569 1 53.56 ? N13 A1A2Q 601 A 1 
HETATM 16 C C14 A1A2Q . . . C 2 15.309 -16.028 16.826 1 50.43 ? C14 A1A2Q 601 A 1 
HETATM 17 N N15 A1A2Q . . . C 2 16.199 -16.941 17.022 1 54.53 ? N15 A1A2Q 601 A 1 
HETATM 18 C C16 A1A2Q . . . C 2 17.236 -16.853 16.217 1 55.18 ? C16 A1A2Q 601 A 1 
HETATM 19 C C18 A1A2Q . . . C 2 18.162 -15.505 14.154 1 51.62 ? C18 A1A2Q 601 A 1 
HETATM 20 F F19 A1A2Q . . . C 2 19.183 -16.366 14.283 1 56.34 ? F19 A1A2Q 601 A 1 
HETATM 21 F F20 A1A2Q . . . C 2 18.578 -14.225 14.297 1 62.68 ? F20 A1A2Q 601 A 1 
HETATM 22 F F21 A1A2Q . . . C 2 17.623 -15.611 12.928 1 51.64 ? F21 A1A2Q 601 A 1 
HETATM 23 S S22 A1A2Q . . . C 2 15.765 -15.067 15.498 1 52.05 ? S22 A1A2Q 601 A 1 
HETATM 24 N N23 A1A2Q . . . C 2 13.353 -14.041 16.326 1 52.3 ? N23 A1A2Q 601 A 1 
HETATM 25 C C25 A1A2Q . . . C 2 15.905 -9.594 15.831 1 53.26 ? C25 A1A2Q 601 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#