data_9D4Y # _model_server_result.job_id aZ2KaBGGcwHH5shvC_7QUA _model_server_result.datetime_utc '2025-04-22 21:15:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 9D4Y # _exptl.entry_id 9D4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.019 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.61 _cell.angle_gamma 90 _cell.entry_id 9D4Y _cell.length_a 63.306 _cell.length_b 80.946 _cell.length_c 65.883 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H27 Cl N6 S' _chem_comp.formula_weight 455.019 _chem_comp.id A1A2S _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C20 A1A2S sing 1 n n C20 C21 A1A2S doub 2 n y C20 C19 A1A2S sing 3 n y C21 C22 A1A2S sing 4 n y C19 C18 A1A2S doub 5 n y C22 C23 A1A2S doub 6 n y C18 C23 A1A2S sing 7 n y C18 C16 A1A2S sing 8 n n N6 C15 A1A2S sing 9 n n C9 C10 A1A2S sing 10 n n C9 C8 A1A2S sing 11 n n C16 C15 A1A2S sing 12 n n C16 C17 A1A2S sing 13 n n C15 C14 A1A2S sing 14 n n C10 C8 A1A2S sing 15 n n C17 C12 A1A2S sing 16 n n C8 C6 A1A2S sing 17 n n C11 C12 A1A2S sing 18 n n C11 N5 A1A2S sing 19 n n C14 C13 A1A2S sing 20 n n C12 C13 A1A2S sing 21 n n C6 S1 A1A2S sing 22 n y C6 C7 A1A2S doub 23 n y N5 C1 A1A2S sing 24 n n S1 C5 A1A2S sing 25 n y C7 N4 A1A2S sing 26 n y C1 N1 A1A2S doub 27 n y C1 N2 A1A2S sing 28 n y N1 C2 A1A2S sing 29 n y C5 N4 A1A2S doub 30 n y C5 N3 A1A2S sing 31 n n N2 C4 A1A2S doub 32 n y C2 N3 A1A2S sing 33 n n C2 C3 A1A2S doub 34 n y C4 C3 A1A2S sing 35 n y N3 H1 A1A2S sing 36 n n C4 H2 A1A2S sing 37 n n C7 H3 A1A2S sing 38 n n C8 H4 A1A2S sing 39 n n C10 H5 A1A2S sing 40 n n C10 H6 A1A2S sing 41 n n C13 H7 A1A2S sing 42 n n C13 H8 A1A2S sing 43 n n C15 H9 A1A2S sing 44 n n C17 H10 A1A2S sing 45 n n C17 H11 A1A2S sing 46 n n C21 H12 A1A2S sing 47 n n C22 H13 A1A2S sing 48 n n C11 H14 A1A2S sing 49 n n C11 H15 A1A2S sing 50 n n C12 H16 A1A2S sing 51 n n C14 H17 A1A2S sing 52 n n C14 H18 A1A2S sing 53 n n C16 H19 A1A2S sing 54 n n C19 H20 A1A2S sing 55 n n C23 H21 A1A2S sing 56 n n C3 H22 A1A2S sing 57 n n C9 H23 A1A2S sing 58 n n C9 H24 A1A2S sing 59 n n N5 H25 A1A2S sing 60 n n N6 H26 A1A2S sing 61 n n N6 H27 A1A2S sing 62 n n # _atom_sites.entry_id 9D4Y _atom_sites.fract_transf_matrix[1][1] 0.015796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004712 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1A2S A 1 601 601 A1A2S LIG . D 2 A1A2S B 1 601 601 A1A2S LIG . E 3 HOH A 1 701 91 HOH HOH . E 3 HOH A 2 702 96 HOH HOH . E 3 HOH A 3 703 66 HOH HOH . E 3 HOH A 4 704 71 HOH HOH . E 3 HOH A 5 705 44 HOH HOH . E 3 HOH A 6 706 63 HOH HOH . E 3 HOH A 7 707 55 HOH HOH . E 3 HOH A 8 708 98 HOH HOH . E 3 HOH A 9 709 99 HOH HOH . E 3 HOH A 10 710 40 HOH HOH . E 3 HOH A 11 711 17 HOH HOH . E 3 HOH A 12 712 42 HOH HOH . E 3 HOH A 13 713 33 HOH HOH . E 3 HOH A 14 714 88 HOH HOH . E 3 HOH A 15 715 29 HOH HOH . E 3 HOH A 16 716 100 HOH HOH . E 3 HOH A 17 717 53 HOH HOH . E 3 HOH A 18 718 32 HOH HOH . E 3 HOH A 19 719 1 HOH HOH . E 3 HOH A 20 720 9 HOH HOH . E 3 HOH A 21 721 25 HOH HOH . E 3 HOH A 22 722 76 HOH HOH . E 3 HOH A 23 723 15 HOH HOH . E 3 HOH A 24 724 83 HOH HOH . E 3 HOH A 25 725 78 HOH HOH . E 3 HOH A 26 726 92 HOH HOH . E 3 HOH A 27 727 22 HOH HOH . E 3 HOH A 28 728 31 HOH HOH . E 3 HOH A 29 729 70 HOH HOH . E 3 HOH A 30 730 89 HOH HOH . E 3 HOH A 31 731 86 HOH HOH . E 3 HOH A 32 732 74 HOH HOH . E 3 HOH A 33 733 45 HOH HOH . E 3 HOH A 34 734 69 HOH HOH . E 3 HOH A 35 735 6 HOH HOH . E 3 HOH A 36 736 19 HOH HOH . E 3 HOH A 37 737 75 HOH HOH . E 3 HOH A 38 738 48 HOH HOH . E 3 HOH A 39 739 10 HOH HOH . E 3 HOH A 40 740 95 HOH HOH . E 3 HOH A 41 741 7 HOH HOH . E 3 HOH A 42 742 5 HOH HOH . E 3 HOH A 43 743 81 HOH HOH . E 3 HOH A 44 744 60 HOH HOH . E 3 HOH A 45 745 61 HOH HOH . E 3 HOH A 46 746 28 HOH HOH . E 3 HOH A 47 747 35 HOH HOH . F 3 HOH B 1 701 18 HOH HOH . F 3 HOH B 2 702 85 HOH HOH . F 3 HOH B 3 703 94 HOH HOH . F 3 HOH B 4 704 56 HOH HOH . F 3 HOH B 5 705 47 HOH HOH . F 3 HOH B 6 706 64 HOH HOH . F 3 HOH B 7 707 37 HOH HOH . F 3 HOH B 8 708 77 HOH HOH . F 3 HOH B 9 709 23 HOH HOH . F 3 HOH B 10 710 97 HOH HOH . F 3 HOH B 11 711 26 HOH HOH . F 3 HOH B 12 712 20 HOH HOH . F 3 HOH B 13 713 51 HOH HOH . F 3 HOH B 14 714 34 HOH HOH . F 3 HOH B 15 715 79 HOH HOH . F 3 HOH B 16 716 84 HOH HOH . F 3 HOH B 17 717 65 HOH HOH . F 3 HOH B 18 718 14 HOH HOH . F 3 HOH B 19 719 43 HOH HOH . F 3 HOH B 20 720 90 HOH HOH . F 3 HOH B 21 721 41 HOH HOH . F 3 HOH B 22 722 3 HOH HOH . F 3 HOH B 23 723 68 HOH HOH . F 3 HOH B 24 724 16 HOH HOH . F 3 HOH B 25 725 59 HOH HOH . F 3 HOH B 26 726 13 HOH HOH . F 3 HOH B 27 727 21 HOH HOH . F 3 HOH B 28 728 50 HOH HOH . F 3 HOH B 29 729 27 HOH HOH . F 3 HOH B 30 730 58 HOH HOH . F 3 HOH B 31 731 38 HOH HOH . F 3 HOH B 32 732 49 HOH HOH . F 3 HOH B 33 733 30 HOH HOH . F 3 HOH B 34 734 11 HOH HOH . F 3 HOH B 35 735 4 HOH HOH . F 3 HOH B 36 736 39 HOH HOH . F 3 HOH B 37 737 57 HOH HOH . F 3 HOH B 38 738 93 HOH HOH . F 3 HOH B 39 739 2 HOH HOH . F 3 HOH B 40 740 24 HOH HOH . F 3 HOH B 41 741 72 HOH HOH . F 3 HOH B 42 742 82 HOH HOH . F 3 HOH B 43 743 36 HOH HOH . F 3 HOH B 44 744 73 HOH HOH . F 3 HOH B 45 745 12 HOH HOH . F 3 HOH B 46 746 8 HOH HOH . F 3 HOH B 47 747 46 HOH HOH . F 3 HOH B 48 748 54 HOH HOH . F 3 HOH B 49 749 80 HOH HOH . F 3 HOH B 50 750 52 HOH HOH . F 3 HOH B 51 751 67 HOH HOH . F 3 HOH B 52 752 62 HOH HOH . F 3 HOH B 53 753 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1A2S . A . C 2 3.846 -13.27 47.717 0.5 49.34 ? N1 A1A2S 601 A 1 HETATM 2 N N1 A1A2S . B . C 2 3.819 -13.107 47.602 0.5 49.71 ? N1 A1A2S 601 A 1 HETATM 3 N N3 A1A2S . A . C 2 4.982 -14.963 48.883 0.5 50.16 ? N3 A1A2S 601 A 1 HETATM 4 N N3 A1A2S . B . C 2 4.952 -14.817 48.727 0.5 48.46 ? N3 A1A2S 601 A 1 HETATM 5 C C4 A1A2S . A . C 2 1.692 -13.475 49.365 0.5 50.94 ? C4 A1A2S 601 A 1 HETATM 6 C C4 A1A2S . B . C 2 1.708 -13.281 49.306 0.5 50.64 ? C4 A1A2S 601 A 1 HETATM 7 C C5 A1A2S . A . C 2 6.101 -15.148 48.109 0.5 50.88 ? C5 A1A2S 601 A 1 HETATM 8 C C5 A1A2S . B . C 2 6.06 -14.969 47.934 0.5 48.65 ? C5 A1A2S 601 A 1 HETATM 9 C C6 A1A2S . A . C 2 7.91 -15.119 46.499 0.5 47.49 ? C6 A1A2S 601 A 1 HETATM 10 C C6 A1A2S . B . C 2 7.869 -14.917 46.363 0.5 48.03 ? C6 A1A2S 601 A 1 HETATM 11 C C7 A1A2S . A . C 2 8.066 -16.025 47.498 0.5 48.3 ? C7 A1A2S 601 A 1 HETATM 12 C C7 A1A2S . B . C 2 8.008 -15.861 47.322 0.5 46.75 ? C7 A1A2S 601 A 1 HETATM 13 C C8 A1A2S . A . C 2 8.78 -14.851 45.349 0.5 48.7 ? C8 A1A2S 601 A 1 HETATM 14 C C8 A1A2S . B . C 2 8.778 -14.656 45.245 0.5 49.4 ? C8 A1A2S 601 A 1 HETATM 15 C C10 A1A2S . A . C 2 9.048 -13.443 44.928 0.5 45.84 ? C10 A1A2S 601 A 1 HETATM 16 C C10 A1A2S . B . C 2 9.07 -13.251 44.831 0.5 48.02 ? C10 A1A2S 601 A 1 HETATM 17 C C13 A1A2S . A . C 2 4.652 -9.421 46.811 0.5 71.35 ? C13 A1A2S 601 A 1 HETATM 18 C C13 A1A2S . B . C 2 4.636 -9.251 46.773 0.5 64.51 ? C13 A1A2S 601 A 1 HETATM 19 C C15 A1A2S . A . C 2 5.69 -8.299 44.851 0.5 73.86 ? C15 A1A2S 601 A 1 HETATM 20 C C15 A1A2S . B . C 2 5.725 -8.135 44.839 0.5 66.95 ? C15 A1A2S 601 A 1 HETATM 21 C C17 A1A2S . A . C 2 6.204 -10.71 45.322 0.5 71.64 ? C17 A1A2S 601 A 1 HETATM 22 C C17 A1A2S . B . C 2 6.193 -10.557 45.311 0.5 65.02 ? C17 A1A2S 601 A 1 HETATM 23 C C20 A1A2S . A . C 2 8.166 -9.232 41.117 0.5 93.79 ? C20 A1A2S 601 A 1 HETATM 24 C C20 A1A2S . B . C 2 8.41 -10.086 41.312 0.5 86.99 ? C20 A1A2S 601 A 1 HETATM 25 C C21 A1A2S . A . C 2 9.451 -9.403 41.591 0.5 95.45 ? C21 A1A2S 601 A 1 HETATM 26 C C21 A1A2S . B . C 2 9.565 -9.452 41.705 0.5 86.78 ? C21 A1A2S 601 A 1 HETATM 27 C C22 A1A2S . A . C 2 9.631 -9.658 42.937 0.5 93.85 ? C22 A1A2S 601 A 1 HETATM 28 C C22 A1A2S . B . C 2 9.585 -8.822 42.932 0.5 81.36 ? C22 A1A2S 601 A 1 HETATM 29 C C1 A1A2S . A . C 2 2.747 -12.499 47.586 0.5 57.2 ? C1 A1A2S 601 A 1 HETATM 30 C C1 A1A2S . B . C 2 2.731 -12.319 47.502 0.5 55.57 ? C1 A1A2S 601 A 1 HETATM 31 C C11 A1A2S . A . C 2 3.806 -11.456 45.624 0.5 63.65 ? C11 A1A2S 601 A 1 HETATM 32 C C11 A1A2S . B . C 2 3.785 -11.263 45.553 0.5 59.58 ? C11 A1A2S 601 A 1 HETATM 33 C C12 A1A2S . A . C 2 5.014 -10.797 46.277 0.5 68.83 ? C12 A1A2S 601 A 1 HETATM 34 C C12 A1A2S . B . C 2 4.985 -10.63 46.241 0.5 62.98 ? C12 A1A2S 601 A 1 HETATM 35 C C14 A1A2S . A . C 2 4.423 -8.419 45.692 0.5 70.64 ? C14 A1A2S 601 A 1 HETATM 36 C C14 A1A2S . B . C 2 4.44 -8.242 45.654 0.5 64.39 ? C14 A1A2S 601 A 1 HETATM 37 C C16 A1A2S . A . C 2 6.047 -9.654 44.223 0.5 73 ? C16 A1A2S 601 A 1 HETATM 38 C C16 A1A2S . B . C 2 6.071 -9.494 44.216 0.5 65.86 ? C16 A1A2S 601 A 1 HETATM 39 C C18 A1A2S . A . C 2 7.249 -9.573 43.307 0.5 85.69 ? C18 A1A2S 601 A 1 HETATM 40 C C18 A1A2S . B . C 2 7.298 -9.461 43.337 0.5 76.04 ? C18 A1A2S 601 A 1 HETATM 41 C C19 A1A2S . A . C 2 7.075 -9.313 41.956 0.5 92.52 ? C19 A1A2S 601 A 1 HETATM 42 C C19 A1A2S . B . C 2 7.287 -10.099 42.11 0.5 83.76 ? C19 A1A2S 601 A 1 HETATM 43 C C2 A1A2S . A . C 2 3.858 -14.158 48.71 0.5 48.74 ? C2 A1A2S 601 A 1 HETATM 44 C C2 A1A2S . B . C 2 3.839 -13.999 48.592 0.5 46.4 ? C2 A1A2S 601 A 1 HETATM 45 C C23 A1A2S . A . C 2 8.54 -9.737 43.79 0.5 93.63 ? C23 A1A2S 601 A 1 HETATM 46 C C23 A1A2S . B . C 2 8.463 -8.828 43.747 0.5 79.18 ? C23 A1A2S 601 A 1 HETATM 47 C C3 A1A2S . A . C 2 2.779 -14.28 49.587 0.5 55.03 ? C3 A1A2S 601 A 1 HETATM 48 C C3 A1A2S . B . C 2 2.785 -14.103 49.497 0.5 53.46 ? C3 A1A2S 601 A 1 HETATM 49 C C9 A1A2S . A . C 2 8.171 -14.294 44.102 0.5 47.22 ? C9 A1A2S 601 A 1 HETATM 50 C C9 A1A2S . B . C 2 8.203 -14.095 43.987 0.5 49.15 ? C9 A1A2S 601 A 1 HETATM 51 N N2 A1A2S . A . C 2 1.655 -12.568 48.385 0.5 54.27 ? N2 A1A2S 601 A 1 HETATM 52 N N2 A1A2S . B . C 2 1.661 -12.37 48.33 0.5 53.35 ? N2 A1A2S 601 A 1 HETATM 53 N N4 A1A2S . A . C 2 7.041 -16.055 48.419 0.5 51.24 ? N4 A1A2S 601 A 1 HETATM 54 N N4 A1A2S . B . C 2 6.974 -15.906 48.224 0.5 50.21 ? N4 A1A2S 601 A 1 HETATM 55 N N5 A1A2S . A . C 2 2.724 -11.608 46.583 0.5 57.68 ? N5 A1A2S 601 A 1 HETATM 56 N N5 A1A2S . B . C 2 2.696 -11.43 46.501 0.5 55.84 ? N5 A1A2S 601 A 1 HETATM 57 N N6 A1A2S . A . C 2 5.522 -7.26 43.802 0.5 78.19 ? N6 A1A2S 601 A 1 HETATM 58 N N6 A1A2S . B . C 2 5.595 -7.086 43.794 0.5 70.97 ? N6 A1A2S 601 A 1 HETATM 59 S S1 A1A2S . A . C 2 6.476 -14.293 46.713 0.5 51.42 ? S1 A1A2S 601 A 1 HETATM 60 S S1 A1A2S . B . C 2 6.442 -14.047 46.563 0.5 48.52 ? S1 A1A2S 601 A 1 HETATM 61 CL CL1 A1A2S . A . C 2 7.882 -8.902 39.428 0.5 103.3 ? CL1 A1A2S 601 A 1 HETATM 62 CL CL1 A1A2S . B . C 2 8.337 -10.889 39.77 0.5 114.62 ? CL1 A1A2S 601 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 62 #