data_9D4Y # _model_server_result.job_id kGvDoCLeNgN16FkohKfGsg _model_server_result.datetime_utc '2025-04-15 17:10:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 9D4Y # _exptl.entry_id 9D4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.019 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.61 _cell.angle_gamma 90 _cell.entry_id 9D4Y _cell.length_a 63.306 _cell.length_b 80.946 _cell.length_c 65.883 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H27 Cl N6 S' _chem_comp.formula_weight 455.019 _chem_comp.id A1A2S _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{[(1R,3R,4S)-4-amino-3-(3-chlorophenyl)cyclohexyl]methyl}-N~4~-(5-cyclopropyl-1,3-thiazol-2-yl)pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C20 A1A2S sing 1 n n C20 C21 A1A2S doub 2 n y C20 C19 A1A2S sing 3 n y C21 C22 A1A2S sing 4 n y C19 C18 A1A2S doub 5 n y C22 C23 A1A2S doub 6 n y C18 C23 A1A2S sing 7 n y C18 C16 A1A2S sing 8 n n N6 C15 A1A2S sing 9 n n C9 C10 A1A2S sing 10 n n C9 C8 A1A2S sing 11 n n C16 C15 A1A2S sing 12 n n C16 C17 A1A2S sing 13 n n C15 C14 A1A2S sing 14 n n C10 C8 A1A2S sing 15 n n C17 C12 A1A2S sing 16 n n C8 C6 A1A2S sing 17 n n C11 C12 A1A2S sing 18 n n C11 N5 A1A2S sing 19 n n C14 C13 A1A2S sing 20 n n C12 C13 A1A2S sing 21 n n C6 S1 A1A2S sing 22 n y C6 C7 A1A2S doub 23 n y N5 C1 A1A2S sing 24 n n S1 C5 A1A2S sing 25 n y C7 N4 A1A2S sing 26 n y C1 N1 A1A2S doub 27 n y C1 N2 A1A2S sing 28 n y N1 C2 A1A2S sing 29 n y C5 N4 A1A2S doub 30 n y C5 N3 A1A2S sing 31 n n N2 C4 A1A2S doub 32 n y C2 N3 A1A2S sing 33 n n C2 C3 A1A2S doub 34 n y C4 C3 A1A2S sing 35 n y N3 H1 A1A2S sing 36 n n C4 H2 A1A2S sing 37 n n C7 H3 A1A2S sing 38 n n C8 H4 A1A2S sing 39 n n C10 H5 A1A2S sing 40 n n C10 H6 A1A2S sing 41 n n C13 H7 A1A2S sing 42 n n C13 H8 A1A2S sing 43 n n C15 H9 A1A2S sing 44 n n C17 H10 A1A2S sing 45 n n C17 H11 A1A2S sing 46 n n C21 H12 A1A2S sing 47 n n C22 H13 A1A2S sing 48 n n C11 H14 A1A2S sing 49 n n C11 H15 A1A2S sing 50 n n C12 H16 A1A2S sing 51 n n C14 H17 A1A2S sing 52 n n C14 H18 A1A2S sing 53 n n C16 H19 A1A2S sing 54 n n C19 H20 A1A2S sing 55 n n C23 H21 A1A2S sing 56 n n C3 H22 A1A2S sing 57 n n C9 H23 A1A2S sing 58 n n C9 H24 A1A2S sing 59 n n N5 H25 A1A2S sing 60 n n N6 H26 A1A2S sing 61 n n N6 H27 A1A2S sing 62 n n # _atom_sites.entry_id 9D4Y _atom_sites.fract_transf_matrix[1][1] 0.015796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004712 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1A2S A 1 601 601 A1A2S LIG . D 2 A1A2S B 1 601 601 A1A2S LIG . E 3 HOH A 1 701 91 HOH HOH . E 3 HOH A 2 702 96 HOH HOH . E 3 HOH A 3 703 66 HOH HOH . E 3 HOH A 4 704 71 HOH HOH . E 3 HOH A 5 705 44 HOH HOH . E 3 HOH A 6 706 63 HOH HOH . E 3 HOH A 7 707 55 HOH HOH . E 3 HOH A 8 708 98 HOH HOH . E 3 HOH A 9 709 99 HOH HOH . E 3 HOH A 10 710 40 HOH HOH . E 3 HOH A 11 711 17 HOH HOH . E 3 HOH A 12 712 42 HOH HOH . E 3 HOH A 13 713 33 HOH HOH . E 3 HOH A 14 714 88 HOH HOH . E 3 HOH A 15 715 29 HOH HOH . E 3 HOH A 16 716 100 HOH HOH . E 3 HOH A 17 717 53 HOH HOH . E 3 HOH A 18 718 32 HOH HOH . E 3 HOH A 19 719 1 HOH HOH . E 3 HOH A 20 720 9 HOH HOH . E 3 HOH A 21 721 25 HOH HOH . E 3 HOH A 22 722 76 HOH HOH . E 3 HOH A 23 723 15 HOH HOH . E 3 HOH A 24 724 83 HOH HOH . E 3 HOH A 25 725 78 HOH HOH . E 3 HOH A 26 726 92 HOH HOH . E 3 HOH A 27 727 22 HOH HOH . E 3 HOH A 28 728 31 HOH HOH . E 3 HOH A 29 729 70 HOH HOH . E 3 HOH A 30 730 89 HOH HOH . E 3 HOH A 31 731 86 HOH HOH . E 3 HOH A 32 732 74 HOH HOH . E 3 HOH A 33 733 45 HOH HOH . E 3 HOH A 34 734 69 HOH HOH . E 3 HOH A 35 735 6 HOH HOH . E 3 HOH A 36 736 19 HOH HOH . E 3 HOH A 37 737 75 HOH HOH . E 3 HOH A 38 738 48 HOH HOH . E 3 HOH A 39 739 10 HOH HOH . E 3 HOH A 40 740 95 HOH HOH . E 3 HOH A 41 741 7 HOH HOH . E 3 HOH A 42 742 5 HOH HOH . E 3 HOH A 43 743 81 HOH HOH . E 3 HOH A 44 744 60 HOH HOH . E 3 HOH A 45 745 61 HOH HOH . E 3 HOH A 46 746 28 HOH HOH . E 3 HOH A 47 747 35 HOH HOH . F 3 HOH B 1 701 18 HOH HOH . F 3 HOH B 2 702 85 HOH HOH . F 3 HOH B 3 703 94 HOH HOH . F 3 HOH B 4 704 56 HOH HOH . F 3 HOH B 5 705 47 HOH HOH . F 3 HOH B 6 706 64 HOH HOH . F 3 HOH B 7 707 37 HOH HOH . F 3 HOH B 8 708 77 HOH HOH . F 3 HOH B 9 709 23 HOH HOH . F 3 HOH B 10 710 97 HOH HOH . F 3 HOH B 11 711 26 HOH HOH . F 3 HOH B 12 712 20 HOH HOH . F 3 HOH B 13 713 51 HOH HOH . F 3 HOH B 14 714 34 HOH HOH . F 3 HOH B 15 715 79 HOH HOH . F 3 HOH B 16 716 84 HOH HOH . F 3 HOH B 17 717 65 HOH HOH . F 3 HOH B 18 718 14 HOH HOH . F 3 HOH B 19 719 43 HOH HOH . F 3 HOH B 20 720 90 HOH HOH . F 3 HOH B 21 721 41 HOH HOH . F 3 HOH B 22 722 3 HOH HOH . F 3 HOH B 23 723 68 HOH HOH . F 3 HOH B 24 724 16 HOH HOH . F 3 HOH B 25 725 59 HOH HOH . F 3 HOH B 26 726 13 HOH HOH . F 3 HOH B 27 727 21 HOH HOH . F 3 HOH B 28 728 50 HOH HOH . F 3 HOH B 29 729 27 HOH HOH . F 3 HOH B 30 730 58 HOH HOH . F 3 HOH B 31 731 38 HOH HOH . F 3 HOH B 32 732 49 HOH HOH . F 3 HOH B 33 733 30 HOH HOH . F 3 HOH B 34 734 11 HOH HOH . F 3 HOH B 35 735 4 HOH HOH . F 3 HOH B 36 736 39 HOH HOH . F 3 HOH B 37 737 57 HOH HOH . F 3 HOH B 38 738 93 HOH HOH . F 3 HOH B 39 739 2 HOH HOH . F 3 HOH B 40 740 24 HOH HOH . F 3 HOH B 41 741 72 HOH HOH . F 3 HOH B 42 742 82 HOH HOH . F 3 HOH B 43 743 36 HOH HOH . F 3 HOH B 44 744 73 HOH HOH . F 3 HOH B 45 745 12 HOH HOH . F 3 HOH B 46 746 8 HOH HOH . F 3 HOH B 47 747 46 HOH HOH . F 3 HOH B 48 748 54 HOH HOH . F 3 HOH B 49 749 80 HOH HOH . F 3 HOH B 50 750 52 HOH HOH . F 3 HOH B 51 751 67 HOH HOH . F 3 HOH B 52 752 62 HOH HOH . F 3 HOH B 53 753 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1A2S . . . D 2 2.044 -10.615 11.31 1 66.22 ? N1 A1A2S 601 B 1 HETATM 2 N N3 A1A2S . . . D 2 0.314 -10.452 9.771 1 59.53 ? N3 A1A2S 601 B 1 HETATM 3 C C4 A1A2S . . . D 2 3.927 -10.734 9.346 1 71.31 ? C4 A1A2S 601 B 1 HETATM 4 C C5 A1A2S . . . D 2 -0.717 -10.175 10.616 1 52.35 ? C5 A1A2S 601 B 1 HETATM 5 C C6 A1A2S . . . D 2 -2.209 -9.738 12.461 1 54.6 ? C6 A1A2S 601 B 1 HETATM 6 C C7 A1A2S . . . D 2 -2.792 -9.608 11.245 1 48.27 ? C7 A1A2S 601 B 1 HETATM 7 C C8 A1A2S . . . D 2 -2.747 -9.474 13.797 1 54.21 ? C8 A1A2S 601 B 1 HETATM 8 C C10 A1A2S . . . D 2 -3.215 -10.598 14.643 1 54.65 ? C10 A1A2S 601 B 1 HETATM 9 C C13 A1A2S . . . D 2 3.256 -8.773 15.03 1 106.15 ? C13 A1A2S 601 B 1 HETATM 10 C C15 A1A2S . . . D 2 1.398 -7.735 16.418 1 108.32 ? C15 A1A2S 601 B 1 HETATM 11 C C17 A1A2S . . . D 2 1.112 -10.005 15.448 1 109.61 ? C17 A1A2S 601 B 1 HETATM 12 C C20 A1A2S . . . D 2 -0.577 -11.175 19.42 1 143.79 ? C20 A1A2S 601 B 1 HETATM 13 C C21 A1A2S . . . D 2 -1.763 -10.485 19.563 1 134.86 ? C21 A1A2S 601 B 1 HETATM 14 C C22 A1A2S . . . D 2 -1.971 -9.365 18.781 1 134.72 ? C22 A1A2S 601 B 1 HETATM 15 C C1 A1A2S . . . D 2 3.362 -10.706 11.566 1 76.4 ? C1 A1A2S 601 B 1 HETATM 16 C C11 A1A2S . . . D 2 2.847 -11.01 13.951 1 85.1 ? C11 A1A2S 601 B 1 HETATM 17 C C12 A1A2S . . . D 2 2.215 -9.712 14.435 1 101.73 ? C12 A1A2S 601 B 1 HETATM 18 C C14 A1A2S . . . D 2 2.643 -7.483 15.562 1 111.29 ? C14 A1A2S 601 B 1 HETATM 19 C C16 A1A2S . . . D 2 1.265 -9.23 16.756 1 113.11 ? C16 A1A2S 601 B 1 HETATM 20 C C18 A1A2S . . . D 2 0.194 -9.64 17.746 1 130.75 ? C18 A1A2S 601 B 1 HETATM 21 C C19 A1A2S . . . D 2 0.39 -10.774 18.521 1 135.34 ? C19 A1A2S 601 B 1 HETATM 22 C C2 A1A2S . . . D 2 1.675 -10.562 10.029 1 63.04 ? C2 A1A2S 601 B 1 HETATM 23 C C23 A1A2S . . . D 2 -1.006 -8.95 17.874 1 136.16 ? C23 A1A2S 601 B 1 HETATM 24 C C3 A1A2S . . . D 2 2.608 -10.627 8.993 1 73.47 ? C3 A1A2S 601 B 1 HETATM 25 C C9 A1A2S . . . D 2 -4.198 -9.674 14.046 1 56.02 ? C9 A1A2S 601 B 1 HETATM 26 N N2 A1A2S . . . D 2 4.327 -10.773 10.618 1 77.83 ? N2 A1A2S 601 B 1 HETATM 27 N N4 A1A2S . . . D 2 -1.949 -9.879 10.187 1 54.05 ? N4 A1A2S 601 B 1 HETATM 28 N N5 A1A2S . . . D 2 3.753 -10.756 12.848 1 79.09 ? N5 A1A2S 601 B 1 HETATM 29 N N6 A1A2S . . . D 2 1.46 -6.891 17.641 1 107.65 ? N6 A1A2S 601 B 1 HETATM 30 S S1 A1A2S . . . D 2 -0.606 -10.172 12.267 1 56.83 ? S1 A1A2S 601 B 1 HETATM 31 CL CL1 A1A2S . . . D 2 -0.272 -12.593 20.386 1 170.66 ? CL1 A1A2S 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #