data_9D57
#
_model_server_result.job_id            qzflO37U0wfF-jzFli3Lgw 
_model_server_result.datetime_utc      '2025-08-21 03:41:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":600}' 
#
_entry.id    9D57 
#
_exptl.entry_id    9D57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              103.12 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GAMMA-AMINO-BUTANOIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.255 
_cell.angle_gamma         90 
_cell.entry_id            9D57 
_cell.length_a            76.501 
_cell.length_b            109.924 
_cell.length_c            214.309 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G,M 1 1 
B,H,N 2 1 
C,I,O 3 1 
D,J,P 4 1 
E,K,Q 5 1 
F,L,R 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 444 A LEU 444 1_555 A N1 CRO 445 A CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.477 ? 
covale ? covale2 A C3 CRO 445 A CRO 447 1_555 A N VAL 446 A VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? 
covale ? covale3 B C LEU 444 B LEU 444 1_555 B N1 CRO 445 B CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.486 ? 
covale ? covale4 B C3 CRO 445 B CRO 447 1_555 B N VAL 446 B VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.746 ? 
covale ? covale5 C C LEU 444 D LEU 444 1_555 C N1 CRO 445 D CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale6 C C3 CRO 445 D CRO 447 1_555 C N VAL 446 D VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.756 ? 
covale ? covale7 D C LEU 444 F LEU 444 1_555 D N1 CRO 445 F CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
covale ? covale8 D C3 CRO 445 F CRO 447 1_555 D N VAL 446 F VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.74 ? 
covale ? covale9 E C LEU 444 C LEU 444 1_555 E N1 CRO 445 C CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
covale ? covale10 E C3 CRO 445 C CRO 447 1_555 E N VAL 446 C VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? 
covale ? covale11 F C LEU 444 E LEU 444 1_555 F N1 CRO 445 E CRO 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
covale ? covale12 F C3 CRO 445 E CRO 447 1_555 F N VAL 446 E VAL 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? 
#
_chem_comp.formula           'C4 H9 N O2' 
_chem_comp.formula_weight    103.12 
_chem_comp.id                ABU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GAMMA-AMINO-BUTANOIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'GAMMA(AMINO)-BUTYRIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD ABU sing 1 n n 
N H ABU sing 2 n n 
N H2 ABU sing 3 n n 
CD CB ABU sing 4 n n 
CD HA1 ABU sing 5 n n 
CD HA2 ABU sing 6 n n 
CB CG ABU sing 7 n n 
CB HB1 ABU sing 8 n n 
CB HB2 ABU sing 9 n n 
CG C ABU sing 10 n n 
CG HG1 ABU sing 11 n n 
CG HG2 ABU sing 12 n n 
C O ABU doub 13 n n 
C OXT ABU sing 14 n n 
OXT HXT ABU sing 15 n n 
#
_atom_sites.entry_id                     9D57 
_atom_sites.fract_transf_matrix[1][1]    0.013072 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002365 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009097 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004742 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ABU A 1 600 600 ABU ABU . 
H 2 ABU B 1 600 600 ABU ABU . 
I 2 ABU D 1 600 600 ABU ABU . 
J 2 ABU F 1 600 600 ABU ABU . 
K 2 ABU C 1 600 600 ABU ABU . 
L 2 ABU E 1 600 600 ABU ABU . 
M 3 HOH A 1 701 70 HOH HOH . 
M 3 HOH A 2 702 31 HOH HOH . 
M 3 HOH A 3 703 11 HOH HOH . 
M 3 HOH A 4 704 21 HOH HOH . 
M 3 HOH A 5 705 65 HOH HOH . 
M 3 HOH A 6 706 54 HOH HOH . 
M 3 HOH A 7 707 75 HOH HOH . 
N 3 HOH B 1 701 8 HOH HOH . 
N 3 HOH B 2 702 80 HOH HOH . 
N 3 HOH B 3 703 55 HOH HOH . 
N 3 HOH B 4 704 58 HOH HOH . 
N 3 HOH B 5 705 86 HOH HOH . 
N 3 HOH B 6 706 96 HOH HOH . 
N 3 HOH B 7 707 24 HOH HOH . 
N 3 HOH B 8 708 16 HOH HOH . 
O 3 HOH D 1 701 37 HOH HOH . 
O 3 HOH D 2 702 9 HOH HOH . 
P 3 HOH F 1 701 40 HOH HOH . 
P 3 HOH F 2 702 60 HOH HOH . 
P 3 HOH F 3 703 59 HOH HOH . 
P 3 HOH F 4 704 28 HOH HOH . 
Q 3 HOH C 1 701 42 HOH HOH . 
Q 3 HOH C 2 702 5 HOH HOH . 
Q 3 HOH C 3 703 20 HOH HOH . 
Q 3 HOH C 4 704 22 HOH HOH . 
Q 3 HOH C 5 705 36 HOH HOH . 
Q 3 HOH C 6 706 47 HOH HOH . 
Q 3 HOH C 7 707 50 HOH HOH . 
R 3 HOH E 1 701 51 HOH HOH . 
R 3 HOH E 2 702 45 HOH HOH . 
R 3 HOH E 3 703 79 HOH HOH . 
R 3 HOH E 4 704 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ABU . . . H 2 47.082 51.667 33.864 1 60.87 ? N ABU 600 B 1 
HETATM 2 C CD ABU . . . H 2 46.267 51.126 32.782 1 47.93 ? CD ABU 600 B 1 
HETATM 3 C CB ABU . . . H 2 45.913 49.712 33.026 1 43.56 ? CB ABU 600 B 1 
HETATM 4 C CG ABU . . . H 2 44.552 49.332 32.529 1 47.36 ? CG ABU 600 B 1 
HETATM 5 C C ABU . . . H 2 44.23 49.389 31.04 1 50.36 ? C ABU 600 B 1 
HETATM 6 O O ABU . . . H 2 43.628 48.385 30.531 1 40.13 ? O ABU 600 B 1 
HETATM 7 O OXT ABU . . . H 2 44.513 50.46 30.398 1 50.03 ? OXT ABU 600 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           7 
#