data_9D5U # _model_server_result.job_id SZp60L5dcFSC80UVTp8bXw _model_server_result.datetime_utc '2024-11-07 03:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d5u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 9D5U # _exptl.entry_id 9D5U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9D5U _cell.length_a 65.837 _cell.length_b 65.837 _cell.length_c 185.637 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D5U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 98.7555 -57.016515 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 113 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 113 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id B _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.869 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 9D5U _atom_sites.fract_transf_matrix[1][1] 0.015189 _atom_sites.fract_transf_matrix[1][2] 0.008769 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 301 GOL LIG . D 4 HOH A 1 401 191 HOH HOH . D 4 HOH A 2 402 142 HOH HOH . D 4 HOH A 3 403 67 HOH HOH . D 4 HOH A 4 404 41 HOH HOH . D 4 HOH A 5 405 153 HOH HOH . D 4 HOH A 6 406 40 HOH HOH . D 4 HOH A 7 407 195 HOH HOH . D 4 HOH A 8 408 177 HOH HOH . D 4 HOH A 9 409 169 HOH HOH . D 4 HOH A 10 410 56 HOH HOH . D 4 HOH A 11 411 175 HOH HOH . D 4 HOH A 12 412 62 HOH HOH . D 4 HOH A 13 413 57 HOH HOH . D 4 HOH A 14 414 58 HOH HOH . D 4 HOH A 15 415 167 HOH HOH . D 4 HOH A 16 416 98 HOH HOH . D 4 HOH A 17 417 74 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 248 HOH HOH . D 4 HOH A 20 420 171 HOH HOH . D 4 HOH A 21 421 120 HOH HOH . D 4 HOH A 22 422 100 HOH HOH . D 4 HOH A 23 423 226 HOH HOH . D 4 HOH A 24 424 18 HOH HOH . D 4 HOH A 25 425 38 HOH HOH . D 4 HOH A 26 426 190 HOH HOH . D 4 HOH A 27 427 215 HOH HOH . D 4 HOH A 28 428 115 HOH HOH . D 4 HOH A 29 429 87 HOH HOH . D 4 HOH A 30 430 42 HOH HOH . D 4 HOH A 31 431 178 HOH HOH . D 4 HOH A 32 432 14 HOH HOH . D 4 HOH A 33 433 146 HOH HOH . D 4 HOH A 34 434 194 HOH HOH . D 4 HOH A 35 435 136 HOH HOH . D 4 HOH A 36 436 173 HOH HOH . D 4 HOH A 37 437 111 HOH HOH . D 4 HOH A 38 438 151 HOH HOH . D 4 HOH A 39 439 26 HOH HOH . D 4 HOH A 40 440 30 HOH HOH . D 4 HOH A 41 441 78 HOH HOH . D 4 HOH A 42 442 35 HOH HOH . D 4 HOH A 43 443 211 HOH HOH . D 4 HOH A 44 444 201 HOH HOH . D 4 HOH A 45 445 113 HOH HOH . D 4 HOH A 46 446 85 HOH HOH . D 4 HOH A 47 447 37 HOH HOH . D 4 HOH A 48 448 22 HOH HOH . D 4 HOH A 49 449 221 HOH HOH . D 4 HOH A 50 450 131 HOH HOH . D 4 HOH A 51 451 150 HOH HOH . D 4 HOH A 52 452 126 HOH HOH . D 4 HOH A 53 453 50 HOH HOH . D 4 HOH A 54 454 43 HOH HOH . D 4 HOH A 55 455 157 HOH HOH . D 4 HOH A 56 456 8 HOH HOH . D 4 HOH A 57 457 1 HOH HOH . D 4 HOH A 58 458 129 HOH HOH . D 4 HOH A 59 459 76 HOH HOH . D 4 HOH A 60 460 176 HOH HOH . D 4 HOH A 61 461 25 HOH HOH . D 4 HOH A 62 462 144 HOH HOH . D 4 HOH A 63 463 135 HOH HOH . D 4 HOH A 64 464 90 HOH HOH . D 4 HOH A 65 465 82 HOH HOH . D 4 HOH A 66 466 45 HOH HOH . D 4 HOH A 67 467 123 HOH HOH . D 4 HOH A 68 468 9 HOH HOH . D 4 HOH A 69 469 207 HOH HOH . D 4 HOH A 70 470 32 HOH HOH . D 4 HOH A 71 471 7 HOH HOH . D 4 HOH A 72 472 121 HOH HOH . D 4 HOH A 73 473 93 HOH HOH . D 4 HOH A 74 474 155 HOH HOH . D 4 HOH A 75 475 162 HOH HOH . D 4 HOH A 76 476 105 HOH HOH . D 4 HOH A 77 477 237 HOH HOH . D 4 HOH A 78 478 17 HOH HOH . D 4 HOH A 79 479 130 HOH HOH . D 4 HOH A 80 480 180 HOH HOH . D 4 HOH A 81 481 91 HOH HOH . D 4 HOH A 82 482 200 HOH HOH . D 4 HOH A 83 483 147 HOH HOH . D 4 HOH A 84 484 232 HOH HOH . D 4 HOH A 85 485 149 HOH HOH . D 4 HOH A 86 486 106 HOH HOH . D 4 HOH A 87 487 231 HOH HOH . D 4 HOH A 88 488 225 HOH HOH . D 4 HOH A 89 489 249 HOH HOH . D 4 HOH A 90 490 251 HOH HOH . D 4 HOH A 91 491 104 HOH HOH . E 4 HOH B 1 301 204 HOH HOH . E 4 HOH B 2 302 145 HOH HOH . E 4 HOH B 3 303 243 HOH HOH . E 4 HOH B 4 304 65 HOH HOH . E 4 HOH B 5 305 166 HOH HOH . E 4 HOH B 6 306 208 HOH HOH . E 4 HOH B 7 307 116 HOH HOH . E 4 HOH B 8 308 188 HOH HOH . E 4 HOH B 9 309 4 HOH HOH . E 4 HOH B 10 310 187 HOH HOH . E 4 HOH B 11 311 83 HOH HOH . E 4 HOH B 12 312 39 HOH HOH . E 4 HOH B 13 313 103 HOH HOH . E 4 HOH B 14 314 21 HOH HOH . E 4 HOH B 15 315 156 HOH HOH . E 4 HOH B 16 316 80 HOH HOH . E 4 HOH B 17 317 79 HOH HOH . E 4 HOH B 18 318 86 HOH HOH . E 4 HOH B 19 319 29 HOH HOH . E 4 HOH B 20 320 28 HOH HOH . E 4 HOH B 21 321 102 HOH HOH . E 4 HOH B 22 322 88 HOH HOH . E 4 HOH B 23 323 53 HOH HOH . E 4 HOH B 24 324 46 HOH HOH . E 4 HOH B 25 325 128 HOH HOH . E 4 HOH B 26 326 213 HOH HOH . E 4 HOH B 27 327 148 HOH HOH . E 4 HOH B 28 328 16 HOH HOH . E 4 HOH B 29 329 118 HOH HOH . E 4 HOH B 30 330 159 HOH HOH . E 4 HOH B 31 331 89 HOH HOH . E 4 HOH B 32 332 48 HOH HOH . E 4 HOH B 33 333 31 HOH HOH . E 4 HOH B 34 334 66 HOH HOH . E 4 HOH B 35 335 59 HOH HOH . E 4 HOH B 36 336 112 HOH HOH . E 4 HOH B 37 337 49 HOH HOH . E 4 HOH B 38 338 54 HOH HOH . E 4 HOH B 39 339 110 HOH HOH . E 4 HOH B 40 340 107 HOH HOH . E 4 HOH B 41 341 94 HOH HOH . E 4 HOH B 42 342 216 HOH HOH . E 4 HOH B 43 343 203 HOH HOH . E 4 HOH B 44 344 64 HOH HOH . E 4 HOH B 45 345 138 HOH HOH . E 4 HOH B 46 346 114 HOH HOH . E 4 HOH B 47 347 240 HOH HOH . E 4 HOH B 48 348 164 HOH HOH . E 4 HOH B 49 349 2 HOH HOH . E 4 HOH B 50 350 81 HOH HOH . E 4 HOH B 51 351 84 HOH HOH . E 4 HOH B 52 352 141 HOH HOH . E 4 HOH B 53 353 44 HOH HOH . E 4 HOH B 54 354 109 HOH HOH . E 4 HOH B 55 355 75 HOH HOH . E 4 HOH B 56 356 55 HOH HOH . E 4 HOH B 57 357 52 HOH HOH . E 4 HOH B 58 358 184 HOH HOH . E 4 HOH B 59 359 117 HOH HOH . E 4 HOH B 60 360 11 HOH HOH . E 4 HOH B 61 361 51 HOH HOH . E 4 HOH B 62 362 163 HOH HOH . E 4 HOH B 63 363 6 HOH HOH . E 4 HOH B 64 364 197 HOH HOH . E 4 HOH B 65 365 134 HOH HOH . E 4 HOH B 66 366 229 HOH HOH . E 4 HOH B 67 367 71 HOH HOH . E 4 HOH B 68 368 33 HOH HOH . E 4 HOH B 69 369 61 HOH HOH . E 4 HOH B 70 370 137 HOH HOH . E 4 HOH B 71 371 13 HOH HOH . E 4 HOH B 72 372 158 HOH HOH . E 4 HOH B 73 373 23 HOH HOH . E 4 HOH B 74 374 140 HOH HOH . E 4 HOH B 75 375 10 HOH HOH . E 4 HOH B 76 376 34 HOH HOH . E 4 HOH B 77 377 202 HOH HOH . E 4 HOH B 78 378 101 HOH HOH . E 4 HOH B 79 379 172 HOH HOH . E 4 HOH B 80 380 192 HOH HOH . E 4 HOH B 81 381 127 HOH HOH . E 4 HOH B 82 382 60 HOH HOH . E 4 HOH B 83 383 218 HOH HOH . E 4 HOH B 84 384 5 HOH HOH . E 4 HOH B 85 385 27 HOH HOH . E 4 HOH B 86 386 92 HOH HOH . E 4 HOH B 87 387 143 HOH HOH . E 4 HOH B 88 388 230 HOH HOH . E 4 HOH B 89 389 183 HOH HOH . E 4 HOH B 90 390 95 HOH HOH . E 4 HOH B 91 391 206 HOH HOH . E 4 HOH B 92 392 108 HOH HOH . E 4 HOH B 93 393 73 HOH HOH . E 4 HOH B 94 394 220 HOH HOH . E 4 HOH B 95 395 160 HOH HOH . E 4 HOH B 96 396 99 HOH HOH . E 4 HOH B 97 397 36 HOH HOH . E 4 HOH B 98 398 3 HOH HOH . E 4 HOH B 99 399 205 HOH HOH . E 4 HOH B 100 400 133 HOH HOH . E 4 HOH B 101 401 189 HOH HOH . E 4 HOH B 102 402 235 HOH HOH . E 4 HOH B 103 403 199 HOH HOH . E 4 HOH B 104 404 63 HOH HOH . E 4 HOH B 105 405 119 HOH HOH . E 4 HOH B 106 406 193 HOH HOH . E 4 HOH B 107 407 12 HOH HOH . E 4 HOH B 108 408 72 HOH HOH . E 4 HOH B 109 409 96 HOH HOH . E 4 HOH B 110 410 209 HOH HOH . E 4 HOH B 111 411 68 HOH HOH . E 4 HOH B 112 412 132 HOH HOH . E 4 HOH B 113 413 77 HOH HOH . E 4 HOH B 114 414 161 HOH HOH . E 4 HOH B 115 415 212 HOH HOH . E 4 HOH B 116 416 170 HOH HOH . E 4 HOH B 117 417 179 HOH HOH . E 4 HOH B 118 418 124 HOH HOH . E 4 HOH B 119 419 214 HOH HOH . E 4 HOH B 120 420 20 HOH HOH . E 4 HOH B 121 421 69 HOH HOH . E 4 HOH B 122 422 219 HOH HOH . E 4 HOH B 123 423 168 HOH HOH . E 4 HOH B 124 424 97 HOH HOH . E 4 HOH B 125 425 196 HOH HOH . E 4 HOH B 126 426 224 HOH HOH . E 4 HOH B 127 427 247 HOH HOH . E 4 HOH B 128 428 70 HOH HOH . E 4 HOH B 129 429 233 HOH HOH . E 4 HOH B 130 430 236 HOH HOH . E 4 HOH B 131 431 222 HOH HOH . E 4 HOH B 132 432 228 HOH HOH . E 4 HOH B 133 433 125 HOH HOH . E 4 HOH B 134 434 227 HOH HOH . E 4 HOH B 135 435 185 HOH HOH . E 4 HOH B 136 436 198 HOH HOH . E 4 HOH B 137 437 244 HOH HOH . E 4 HOH B 138 438 186 HOH HOH . E 4 HOH B 139 439 122 HOH HOH . E 4 HOH B 140 440 234 HOH HOH . E 4 HOH B 141 441 241 HOH HOH . E 4 HOH B 142 442 15 HOH HOH . E 4 HOH B 143 443 238 HOH HOH . E 4 HOH B 144 444 182 HOH HOH . E 4 HOH B 145 445 181 HOH HOH . E 4 HOH B 146 446 239 HOH HOH . E 4 HOH B 147 447 152 HOH HOH . E 4 HOH B 148 448 210 HOH HOH . E 4 HOH B 149 449 47 HOH HOH . E 4 HOH B 150 450 154 HOH HOH . E 4 HOH B 151 451 217 HOH HOH . E 4 HOH B 152 452 223 HOH HOH . E 4 HOH B 153 453 250 HOH HOH . E 4 HOH B 154 454 246 HOH HOH . E 4 HOH B 155 455 174 HOH HOH . E 4 HOH B 156 456 245 HOH HOH . E 4 HOH B 157 457 165 HOH HOH . E 4 HOH B 158 458 242 HOH HOH . E 4 HOH B 159 459 139 HOH HOH . E 4 HOH B 160 460 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 44.152 -22.482 16.404 1 21.17 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 44.089 -23.537 15.425 1 20.54 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 42.804 -21.811 16.6 1 20.8 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 42.941 -20.573 17.318 1 17.25 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 41.816 -22.724 17.302 1 20.04 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 41.795 -22.516 18.711 1 22.06 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . C 3 44.824 -21.831 16.114 1 25.54 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . C 3 44.476 -22.861 17.247 1 25.54 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . C 3 43.71 -23.22 14.734 1 24.78 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . C 3 42.448 -21.578 15.718 1 25.1 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . C 3 42.706 -20.721 18.121 1 20.84 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . C 3 42.047 -23.663 17.146 1 24.19 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . C 3 40.909 -22.568 16.968 1 24.19 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . C 3 41.314 -23.136 19.037 1 26.62 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #