data_9D6B # _model_server_result.job_id ugRioowi3mZjx5B8nUKwPA _model_server_result.datetime_utc '2025-07-31 05:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 9D6B # _exptl.entry_id 9D6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9D6B _cell.length_a 88.64 _cell.length_b 88.64 _cell.length_c 39.001 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G 1 1 B,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 121 n n S C1 DMS sing 122 n n S C2 DMS sing 123 n n C1 H11 DMS sing 124 n n C1 H12 DMS sing 125 n n C1 H13 DMS sing 126 n n C2 H21 DMS sing 127 n n C2 H22 DMS sing 128 n n C2 H23 DMS sing 129 n n # _atom_sites.entry_id 9D6B _atom_sites.fract_transf_matrix[1][1] 0.011282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1A17 A 1 201 201 A1A17 LA1 . D 3 DMS A 1 202 202 DMS DMS . E 3 DMS A 1 203 203 DMS DMS . F 4 CL A 1 204 1 CL CL . G 5 HOH A 1 301 229 HOH HOH . G 5 HOH A 2 302 249 HOH HOH . G 5 HOH A 3 303 756 HOH HOH . G 5 HOH A 4 304 1099 HOH HOH . G 5 HOH A 5 305 358 HOH HOH . G 5 HOH A 6 306 122 HOH HOH . G 5 HOH A 7 307 133 HOH HOH . G 5 HOH A 8 308 428 HOH HOH . G 5 HOH A 9 309 677 HOH HOH . G 5 HOH A 10 310 116 HOH HOH . G 5 HOH A 11 311 1240 HOH HOH . G 5 HOH A 12 312 379 HOH HOH . G 5 HOH A 13 313 536 HOH HOH . G 5 HOH A 14 314 365 HOH HOH . G 5 HOH A 15 315 212 HOH HOH . G 5 HOH A 16 316 177 HOH HOH . G 5 HOH A 17 317 975 HOH HOH . G 5 HOH A 18 318 1241 HOH HOH . G 5 HOH A 19 319 896 HOH HOH . G 5 HOH A 20 320 112 HOH HOH . G 5 HOH A 21 321 64 HOH HOH . G 5 HOH A 22 322 12 HOH HOH . G 5 HOH A 23 323 282 HOH HOH . G 5 HOH A 24 324 223 HOH HOH . G 5 HOH A 25 325 13 HOH HOH . G 5 HOH A 26 326 26 HOH HOH . G 5 HOH A 27 327 158 HOH HOH . G 5 HOH A 28 328 56 HOH HOH . G 5 HOH A 29 329 651 HOH HOH . G 5 HOH A 30 330 353 HOH HOH . G 5 HOH A 31 331 164 HOH HOH . G 5 HOH A 32 332 216 HOH HOH . G 5 HOH A 33 333 125 HOH HOH . G 5 HOH A 34 334 159 HOH HOH . G 5 HOH A 35 335 163 HOH HOH . G 5 HOH A 36 336 218 HOH HOH . G 5 HOH A 37 337 192 HOH HOH . G 5 HOH A 38 338 7 HOH HOH . G 5 HOH A 39 339 23 HOH HOH . G 5 HOH A 40 340 127 HOH HOH . G 5 HOH A 41 341 388 HOH HOH . G 5 HOH A 42 342 185 HOH HOH . G 5 HOH A 43 343 305 HOH HOH . G 5 HOH A 44 344 10 HOH HOH . G 5 HOH A 45 345 100 HOH HOH . G 5 HOH A 46 346 21 HOH HOH . G 5 HOH A 47 347 279 HOH HOH . G 5 HOH A 48 348 182 HOH HOH . G 5 HOH A 49 349 53 HOH HOH . G 5 HOH A 50 350 17 HOH HOH . G 5 HOH A 51 351 38 HOH HOH . G 5 HOH A 52 352 142 HOH HOH . G 5 HOH A 53 353 36 HOH HOH . G 5 HOH A 54 354 60 HOH HOH . G 5 HOH A 55 355 2 HOH HOH . G 5 HOH A 56 356 35 HOH HOH . G 5 HOH A 57 357 318 HOH HOH . G 5 HOH A 58 358 69 HOH HOH . G 5 HOH A 59 359 59 HOH HOH . G 5 HOH A 60 360 262 HOH HOH . G 5 HOH A 61 361 166 HOH HOH . G 5 HOH A 62 362 143 HOH HOH . G 5 HOH A 63 363 209 HOH HOH . G 5 HOH A 64 364 84 HOH HOH . G 5 HOH A 65 365 564 HOH HOH . G 5 HOH A 66 366 63 HOH HOH . G 5 HOH A 67 367 74 HOH HOH . G 5 HOH A 68 368 1228 HOH HOH . G 5 HOH A 69 369 25 HOH HOH . G 5 HOH A 70 370 217 HOH HOH . G 5 HOH A 71 371 6 HOH HOH . G 5 HOH A 72 372 85 HOH HOH . G 5 HOH A 73 373 33 HOH HOH . G 5 HOH A 74 374 50 HOH HOH . G 5 HOH A 75 375 250 HOH HOH . G 5 HOH A 76 376 206 HOH HOH . G 5 HOH A 77 377 57 HOH HOH . G 5 HOH A 78 378 132 HOH HOH . G 5 HOH A 79 379 1222 HOH HOH . G 5 HOH A 80 380 1238 HOH HOH . G 5 HOH A 81 381 51 HOH HOH . G 5 HOH A 82 382 97 HOH HOH . G 5 HOH A 83 383 357 HOH HOH . G 5 HOH A 84 384 52 HOH HOH . G 5 HOH A 85 385 465 HOH HOH . G 5 HOH A 86 386 316 HOH HOH . G 5 HOH A 87 387 37 HOH HOH . G 5 HOH A 88 388 99 HOH HOH . G 5 HOH A 89 389 54 HOH HOH . G 5 HOH A 90 390 107 HOH HOH . G 5 HOH A 91 391 86 HOH HOH . G 5 HOH A 92 392 213 HOH HOH . G 5 HOH A 93 393 126 HOH HOH . G 5 HOH A 94 394 88 HOH HOH . G 5 HOH A 95 395 4 HOH HOH . G 5 HOH A 96 396 28 HOH HOH . G 5 HOH A 97 397 22 HOH HOH . G 5 HOH A 98 398 265 HOH HOH . G 5 HOH A 99 399 373 HOH HOH . G 5 HOH A 100 400 382 HOH HOH . G 5 HOH A 101 401 117 HOH HOH . G 5 HOH A 102 402 310 HOH HOH . G 5 HOH A 103 403 68 HOH HOH . G 5 HOH A 104 404 733 HOH HOH . G 5 HOH A 105 405 245 HOH HOH . G 5 HOH A 106 406 155 HOH HOH . G 5 HOH A 107 407 128 HOH HOH . G 5 HOH A 108 408 154 HOH HOH . G 5 HOH A 109 409 187 HOH HOH . G 5 HOH A 110 410 162 HOH HOH . G 5 HOH A 111 411 170 HOH HOH . G 5 HOH A 112 412 80 HOH HOH . G 5 HOH A 113 413 971 HOH HOH . G 5 HOH A 114 414 180 HOH HOH . G 5 HOH A 115 415 226 HOH HOH . G 5 HOH A 116 416 1124 HOH HOH . G 5 HOH A 117 417 147 HOH HOH . G 5 HOH A 118 418 124 HOH HOH . G 5 HOH A 119 419 190 HOH HOH . G 5 HOH A 120 420 1220 HOH HOH . G 5 HOH A 121 421 146 HOH HOH . G 5 HOH A 122 422 173 HOH HOH . G 5 HOH A 123 423 1219 HOH HOH . G 5 HOH A 124 424 574 HOH HOH . G 5 HOH A 125 425 297 HOH HOH . G 5 HOH A 126 426 361 HOH HOH . G 5 HOH A 127 427 487 HOH HOH . G 5 HOH A 128 428 172 HOH HOH . G 5 HOH A 129 429 415 HOH HOH . G 5 HOH A 130 430 462 HOH HOH . G 5 HOH A 131 431 328 HOH HOH . G 5 HOH A 132 432 349 HOH HOH . G 5 HOH A 133 433 200 HOH HOH . G 5 HOH A 134 434 713 HOH HOH . G 5 HOH A 135 435 869 HOH HOH . G 5 HOH A 136 436 130 HOH HOH . G 5 HOH A 137 437 224 HOH HOH . G 5 HOH A 138 438 558 HOH HOH . G 5 HOH A 139 439 653 HOH HOH . G 5 HOH A 140 440 189 HOH HOH . G 5 HOH A 141 441 757 HOH HOH . G 5 HOH A 142 442 1233 HOH HOH . G 5 HOH A 143 443 277 HOH HOH . G 5 HOH A 144 444 333 HOH HOH . G 5 HOH A 145 445 884 HOH HOH . G 5 HOH A 146 446 616 HOH HOH . G 5 HOH A 147 447 293 HOH HOH . G 5 HOH A 148 448 139 HOH HOH . G 5 HOH A 149 449 156 HOH HOH . G 5 HOH A 150 450 354 HOH HOH . G 5 HOH A 151 451 313 HOH HOH . G 5 HOH A 152 452 916 HOH HOH . G 5 HOH A 153 453 359 HOH HOH . G 5 HOH A 154 454 319 HOH HOH . G 5 HOH A 155 455 1230 HOH HOH . H 5 HOH B 1 201 589 HOH HOH . H 5 HOH B 2 202 70 HOH HOH . H 5 HOH B 3 203 104 HOH HOH . H 5 HOH B 4 204 193 HOH HOH . H 5 HOH B 5 205 131 HOH HOH . H 5 HOH B 6 206 283 HOH HOH . H 5 HOH B 7 207 66 HOH HOH . H 5 HOH B 8 208 71 HOH HOH . H 5 HOH B 9 209 101 HOH HOH . H 5 HOH B 10 210 225 HOH HOH . H 5 HOH B 11 211 371 HOH HOH . H 5 HOH B 12 212 135 HOH HOH . H 5 HOH B 13 213 129 HOH HOH . H 5 HOH B 14 214 55 HOH HOH . H 5 HOH B 15 215 32 HOH HOH . H 5 HOH B 16 216 152 HOH HOH . H 5 HOH B 17 217 1031 HOH HOH . H 5 HOH B 18 218 67 HOH HOH . H 5 HOH B 19 219 62 HOH HOH . H 5 HOH B 20 220 39 HOH HOH . H 5 HOH B 21 221 169 HOH HOH . H 5 HOH B 22 222 114 HOH HOH . H 5 HOH B 23 223 123 HOH HOH . H 5 HOH B 24 224 34 HOH HOH . H 5 HOH B 25 225 362 HOH HOH . H 5 HOH B 26 226 276 HOH HOH . H 5 HOH B 27 227 42 HOH HOH . H 5 HOH B 28 228 144 HOH HOH . H 5 HOH B 29 229 77 HOH HOH . H 5 HOH B 30 230 372 HOH HOH . H 5 HOH B 31 231 278 HOH HOH . H 5 HOH B 32 232 31 HOH HOH . H 5 HOH B 33 233 73 HOH HOH . H 5 HOH B 34 234 43 HOH HOH . H 5 HOH B 35 235 121 HOH HOH . H 5 HOH B 36 236 3 HOH HOH . H 5 HOH B 37 237 95 HOH HOH . H 5 HOH B 38 238 8 HOH HOH . H 5 HOH B 39 239 366 HOH HOH . H 5 HOH B 40 240 134 HOH HOH . H 5 HOH B 41 241 240 HOH HOH . H 5 HOH B 42 242 171 HOH HOH . H 5 HOH B 43 243 20 HOH HOH . H 5 HOH B 44 244 356 HOH HOH . H 5 HOH B 45 245 242 HOH HOH . H 5 HOH B 46 246 30 HOH HOH . H 5 HOH B 47 247 72 HOH HOH . H 5 HOH B 48 248 314 HOH HOH . H 5 HOH B 49 249 41 HOH HOH . H 5 HOH B 50 250 312 HOH HOH . H 5 HOH B 51 251 205 HOH HOH . H 5 HOH B 52 252 332 HOH HOH . H 5 HOH B 53 253 210 HOH HOH . H 5 HOH B 54 254 11 HOH HOH . H 5 HOH B 55 255 81 HOH HOH . H 5 HOH B 56 256 44 HOH HOH . H 5 HOH B 57 257 82 HOH HOH . H 5 HOH B 58 258 141 HOH HOH . H 5 HOH B 59 259 24 HOH HOH . H 5 HOH B 60 260 118 HOH HOH . H 5 HOH B 61 261 113 HOH HOH . H 5 HOH B 62 262 232 HOH HOH . H 5 HOH B 63 263 186 HOH HOH . H 5 HOH B 64 264 588 HOH HOH . H 5 HOH B 65 265 178 HOH HOH . H 5 HOH B 66 266 87 HOH HOH . H 5 HOH B 67 267 184 HOH HOH . H 5 HOH B 68 268 14 HOH HOH . H 5 HOH B 69 269 79 HOH HOH . H 5 HOH B 70 270 1113 HOH HOH . H 5 HOH B 71 271 194 HOH HOH . H 5 HOH B 72 272 119 HOH HOH . H 5 HOH B 73 273 453 HOH HOH . H 5 HOH B 74 274 40 HOH HOH . H 5 HOH B 75 275 1234 HOH HOH . H 5 HOH B 76 276 76 HOH HOH . H 5 HOH B 77 277 151 HOH HOH . H 5 HOH B 78 278 65 HOH HOH . H 5 HOH B 79 279 179 HOH HOH . H 5 HOH B 80 280 16 HOH HOH . H 5 HOH B 81 281 48 HOH HOH . H 5 HOH B 82 282 136 HOH HOH . H 5 HOH B 83 283 1218 HOH HOH . H 5 HOH B 84 284 96 HOH HOH . H 5 HOH B 85 285 160 HOH HOH . H 5 HOH B 86 286 18 HOH HOH . H 5 HOH B 87 287 120 HOH HOH . H 5 HOH B 88 288 238 HOH HOH . H 5 HOH B 89 289 58 HOH HOH . H 5 HOH B 90 290 222 HOH HOH . H 5 HOH B 91 291 562 HOH HOH . H 5 HOH B 92 292 157 HOH HOH . H 5 HOH B 93 293 78 HOH HOH . H 5 HOH B 94 294 1229 HOH HOH . H 5 HOH B 95 295 106 HOH HOH . H 5 HOH B 96 296 344 HOH HOH . H 5 HOH B 97 297 161 HOH HOH . H 5 HOH B 98 298 188 HOH HOH . H 5 HOH B 99 299 197 HOH HOH . H 5 HOH B 100 300 298 HOH HOH . H 5 HOH B 101 301 861 HOH HOH . H 5 HOH B 102 302 108 HOH HOH . H 5 HOH B 103 303 267 HOH HOH . H 5 HOH B 104 304 456 HOH HOH . H 5 HOH B 105 305 102 HOH HOH . H 5 HOH B 106 306 203 HOH HOH . H 5 HOH B 107 307 45 HOH HOH . H 5 HOH B 108 308 91 HOH HOH . H 5 HOH B 109 309 29 HOH HOH . H 5 HOH B 110 310 46 HOH HOH . H 5 HOH B 111 311 93 HOH HOH . H 5 HOH B 112 312 137 HOH HOH . H 5 HOH B 113 313 47 HOH HOH . H 5 HOH B 114 314 92 HOH HOH . H 5 HOH B 115 315 281 HOH HOH . H 5 HOH B 116 316 215 HOH HOH . H 5 HOH B 117 317 1221 HOH HOH . H 5 HOH B 118 318 83 HOH HOH . H 5 HOH B 119 319 843 HOH HOH . H 5 HOH B 120 320 1224 HOH HOH . H 5 HOH B 121 321 433 HOH HOH . H 5 HOH B 122 322 94 HOH HOH . H 5 HOH B 123 323 201 HOH HOH . H 5 HOH B 124 324 1231 HOH HOH . H 5 HOH B 125 325 436 HOH HOH . H 5 HOH B 126 326 323 HOH HOH . H 5 HOH B 127 327 406 HOH HOH . H 5 HOH B 128 328 252 HOH HOH . H 5 HOH B 129 329 294 HOH HOH . H 5 HOH B 130 330 220 HOH HOH . H 5 HOH B 131 331 165 HOH HOH . H 5 HOH B 132 332 336 HOH HOH . H 5 HOH B 133 333 370 HOH HOH . H 5 HOH B 134 334 330 HOH HOH . H 5 HOH B 135 335 1235 HOH HOH . H 5 HOH B 136 336 994 HOH HOH . H 5 HOH B 137 337 264 HOH HOH . H 5 HOH B 138 338 304 HOH HOH . H 5 HOH B 139 339 467 HOH HOH . H 5 HOH B 140 340 867 HOH HOH . H 5 HOH B 141 341 1225 HOH HOH . H 5 HOH B 142 342 199 HOH HOH . H 5 HOH B 143 343 615 HOH HOH . H 5 HOH B 144 344 375 HOH HOH . H 5 HOH B 145 345 148 HOH HOH . H 5 HOH B 146 346 256 HOH HOH . H 5 HOH B 147 347 551 HOH HOH . H 5 HOH B 148 348 342 HOH HOH . H 5 HOH B 149 349 705 HOH HOH . H 5 HOH B 150 350 317 HOH HOH . H 5 HOH B 151 351 1237 HOH HOH . H 5 HOH B 152 352 149 HOH HOH . H 5 HOH B 153 353 1226 HOH HOH . H 5 HOH B 154 354 1227 HOH HOH . H 5 HOH B 155 355 275 HOH HOH . H 5 HOH B 156 356 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 10.196 3.079 0.318 0.6 16.4 ? S DMS 202 A 1 HETATM 2 O O DMS . . . D 3 10.451 3.853 -0.946 0.6 17.19 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . D 3 8.429 3.24 0.646 0.6 15.45 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . D 3 10.77 4.097 1.698 0.6 16.57 ? C2 DMS 202 A 1 HETATM 5 H H11 DMS . . . D 3 8.213 2.815 1.491 0.6 18.55 ? H11 DMS 202 A 1 HETATM 6 H H12 DMS . . . D 3 7.924 2.814 -0.064 0.6 18.55 ? H12 DMS 202 A 1 HETATM 7 H H13 DMS . . . D 3 8.189 4.179 0.69 0.6 18.55 ? H13 DMS 202 A 1 HETATM 8 H H21 DMS . . . D 3 11.682 4.382 1.535 0.6 19.9 ? H21 DMS 202 A 1 HETATM 9 H H22 DMS . . . D 3 10.201 4.877 1.787 0.6 19.9 ? H22 DMS 202 A 1 HETATM 10 H H23 DMS . . . D 3 10.737 3.582 2.519 0.6 19.9 ? H23 DMS 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #