data_9D6O # _model_server_result.job_id R4FeNRQp7SDiglESLkWFlA _model_server_result.datetime_utc '2025-08-21 21:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2603}' # _entry.id 9D6O # _exptl.entry_id 9D6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 509.374 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3-(2-hydroxyethyl)-2-oxoimidazolidin-1-yl]-4,6-bis(trifluoromethyl)phenyl (4-fluorophenyl)(methyl)carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9D6O _cell.length_a 172.356 _cell.length_b 172.356 _cell.length_c 62.415 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 401 A ASP 2330 1_555 D MG MG . A MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc2 A OD2 ASP 401 A ASP 2330 1_555 D MG MG . A MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc3 A OD2 ASP 602 A ASP 2540 1_555 D MG MG . A MG 2601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 D MG MG . A MG 2601 1_555 E O2B DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc5 D MG MG . A MG 2601 1_555 E O3B DG3 . A DG3 2602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? hydrog WATSON-CRICK hydrog1 B N1 DG 11 E DG 11 1_555 C N3 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 11 E DG 11 1_555 C O2 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 11 E DG 11 1_555 C N4 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DC 12 E DC 12 1_555 C N1 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N4 DC 12 E DC 12 1_555 C O6 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O2 DC 12 E DC 12 1_555 C N2 DG 13 F DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 13 E DG 13 1_555 C N3 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 13 E DG 13 1_555 C O2 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 13 E DG 13 1_555 C N4 DC 12 F DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 14 E DC 14 1_555 C N1 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 14 E DC 14 1_555 C O6 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 14 E DC 14 1_555 C N2 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 15 E DT 15 1_555 C N1 DA 10 F DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 15 E DT 15 1_555 C N6 DA 10 F DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 16 E DG 16 1_555 C N3 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 16 E DG 16 1_555 C O2 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 16 E DG 16 1_555 C N4 DC 9 F DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 17 E DC 17 1_555 C N1 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 17 E DC 17 1_555 C O6 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 17 E DC 17 1_555 C N2 DG 8 F DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DG 18 E DG 18 1_555 C N3 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N2 DG 18 E DG 18 1_555 C O2 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O6 DG 18 E DG 18 1_555 C N4 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DA 19 E DA 19 1_555 C N3 DT 6 F DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N6 DA 19 E DA 19 1_555 C O4 DT 6 F DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H18 F7 N3 O4' _chem_comp.formula_weight 509.374 _chem_comp.id A1A2D _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3-(2-hydroxyethyl)-2-oxoimidazolidin-1-yl]-4,6-bis(trifluoromethyl)phenyl (4-fluorophenyl)(methyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F01 C01 A1A2D sing 1 n n C01 C02 A1A2D doub 2 n y C01 C06 A1A2D sing 3 n y C02 C03 A1A2D sing 4 n y C03 C04 A1A2D doub 5 n y C04 C05 A1A2D sing 6 n y C04 N01 A1A2D sing 7 n n C05 C06 A1A2D doub 8 n y N01 C07 A1A2D sing 9 n n N01 C08 A1A2D sing 10 n n C08 O01 A1A2D doub 11 n n C08 O02 A1A2D sing 12 n n O02 C09 A1A2D sing 13 n n C09 C10 A1A2D doub 14 n y C09 C13 A1A2D sing 15 n y C10 C11 A1A2D sing 16 n y C10 N02 A1A2D sing 17 n n C11 C12 A1A2D doub 18 n y C12 C15 A1A2D sing 19 n n C12 C16 A1A2D sing 20 n y C13 C14 A1A2D sing 21 n n C13 C16 A1A2D doub 22 n y C14 F02 A1A2D sing 23 n n C14 F03 A1A2D sing 24 n n C14 F04 A1A2D sing 25 n n C15 F05 A1A2D sing 26 n n C15 F06 A1A2D sing 27 n n C15 F07 A1A2D sing 28 n n N02 C17 A1A2D sing 29 n n N02 C19 A1A2D sing 30 n n C17 C18 A1A2D sing 31 n n C18 N03 A1A2D sing 32 n n N03 C19 A1A2D sing 33 n n N03 C20 A1A2D sing 34 n n C19 O03 A1A2D doub 35 n n C20 C21 A1A2D sing 36 n n C21 O04 A1A2D sing 37 n n C11 H08 A1A2D sing 38 n n C16 H09 A1A2D sing 39 n n C20 H14 A1A2D sing 40 n n C20 H15 A1A2D sing 41 n n C18 H12 A1A2D sing 42 n n C18 H13 A1A2D sing 43 n n C17 H10 A1A2D sing 44 n n C17 H11 A1A2D sing 45 n n C21 H17 A1A2D sing 46 n n C21 H16 A1A2D sing 47 n n C02 H01 A1A2D sing 48 n n C03 H04 A1A2D sing 49 n n C05 H02 A1A2D sing 50 n n C06 H03 A1A2D sing 51 n n C07 H07 A1A2D sing 52 n n C07 H05 A1A2D sing 53 n n C07 H06 A1A2D sing 54 n n O04 H18 A1A2D sing 55 n n # _atom_sites.entry_id 9D6O _atom_sites.fract_transf_matrix[1][1] 0.005802 _atom_sites.fract_transf_matrix[1][2] 0.00335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 2601 2603 MG MG . E 5 DG3 A 1 2602 2604 DG3 DG3 . F 6 A1A2D A 1 2603 2605 A1A2D 161 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1A2D . . . F 6 68.711 39.663 -14.279 1 174.45 ? C11 A1A2D 2603 A 1 HETATM 2 C C10 A1A2D . . . F 6 69.494 40.808 -14.222 1 187.56 ? C10 A1A2D 2603 A 1 HETATM 3 C C12 A1A2D . . . F 6 67.358 39.732 -13.966 1 149.9 ? C12 A1A2D 2603 A 1 HETATM 4 C C15 A1A2D . . . F 6 66.492 38.483 -14.028 1 151.4 ? C15 A1A2D 2603 A 1 HETATM 5 C C16 A1A2D . . . F 6 66.819 40.95 -13.6 1 155.41 ? C16 A1A2D 2603 A 1 HETATM 6 C C20 A1A2D . . . F 6 73.806 40.655 -16.768 1 192.04 ? C20 A1A2D 2603 A 1 HETATM 7 C C19 A1A2D . . . F 6 71.443 40.798 -15.816 1 176.56 ? C19 A1A2D 2603 A 1 HETATM 8 C C18 A1A2D . . . F 6 73.192 40.409 -14.284 1 170.87 ? C18 A1A2D 2603 A 1 HETATM 9 C C17 A1A2D . . . F 6 71.939 40.449 -13.52 1 177.16 ? C17 A1A2D 2603 A 1 HETATM 10 C C21 A1A2D . . . F 6 73.48 39.623 -17.825 1 200.75 ? C21 A1A2D 2603 A 1 HETATM 11 C C01 A1A2D . . . F 6 70.944 46.974 -10.987 1 139.74 ? C01 A1A2D 2603 A 1 HETATM 12 C C02 A1A2D . . . F 6 69.711 47.25 -11.518 1 148.83 ? C02 A1A2D 2603 A 1 HETATM 13 C C03 A1A2D . . . F 6 69.368 46.74 -12.768 1 168.55 ? C03 A1A2D 2603 A 1 HETATM 14 C C04 A1A2D . . . F 6 70.286 45.95 -13.477 1 176.01 ? C04 A1A2D 2603 A 1 HETATM 15 C C05 A1A2D . . . F 6 71.549 45.67 -12.921 1 162.85 ? C05 A1A2D 2603 A 1 HETATM 16 C C06 A1A2D . . . F 6 71.879 46.187 -11.669 1 148.52 ? C06 A1A2D 2603 A 1 HETATM 17 C C07 A1A2D . . . F 6 69.738 46.288 -15.874 1 153.57 ? C07 A1A2D 2603 A 1 HETATM 18 C C08 A1A2D . . . F 6 69.796 43.968 -14.913 1 187.6 ? C08 A1A2D 2603 A 1 HETATM 19 C C09 A1A2D . . . F 6 68.935 42.03 -13.855 1 192.3 ? C09 A1A2D 2603 A 1 HETATM 20 C C13 A1A2D . . . F 6 67.581 42.117 -13.533 1 178.82 ? C13 A1A2D 2603 A 1 HETATM 21 C C14 A1A2D . . . F 6 66.925 43.419 -13.121 1 167.78 ? C14 A1A2D 2603 A 1 HETATM 22 F F01 A1A2D . . . F 6 71.274 47.483 -9.75 1 137.73 ? F01 A1A2D 2603 A 1 HETATM 23 F F02 A1A2D . . . F 6 67.032 44.336 -14.118 1 194.41 ? F02 A1A2D 2603 A 1 HETATM 24 F F03 A1A2D . . . F 6 65.614 43.194 -12.875 1 141.29 ? F03 A1A2D 2603 A 1 HETATM 25 F F04 A1A2D . . . F 6 67.524 43.897 -11.982 1 160.82 ? F04 A1A2D 2603 A 1 HETATM 26 F F05 A1A2D . . . F 6 65.698 38.537 -15.124 1 157.54 ? F05 A1A2D 2603 A 1 HETATM 27 F F06 A1A2D . . . F 6 65.721 38.407 -12.907 1 183.52 ? F06 A1A2D 2603 A 1 HETATM 28 F F07 A1A2D . . . F 6 67.298 37.377 -14.105 1 153.3 ? F07 A1A2D 2603 A 1 HETATM 29 N N01 A1A2D . . . F 6 69.941 45.418 -14.758 1 187.4 ? N01 A1A2D 2603 A 1 HETATM 30 N N02 A1A2D . . . F 6 70.892 40.703 -14.556 1 180.09 ? N02 A1A2D 2603 A 1 HETATM 31 N N03 A1A2D . . . F 6 72.79 40.628 -15.682 1 179.47 ? N03 A1A2D 2603 A 1 HETATM 32 O O01 A1A2D . . . F 6 69.697 43.478 -16.004 1 162.58 ? O01 A1A2D 2603 A 1 HETATM 33 O O02 A1A2D . . . F 6 69.773 43.191 -13.797 1 200.9 ? O02 A1A2D 2603 A 1 HETATM 34 O O03 A1A2D . . . F 6 70.832 40.997 -16.853 1 176.86 ? O03 A1A2D 2603 A 1 HETATM 35 O O04 A1A2D . . . F 6 72.932 38.496 -17.228 1 184.67 ? O04 A1A2D 2603 A 1 # _model_server_stats.io_time_ms 1719 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #