data_9D7L
#
_model_server_result.job_id            O5KLwQmJARbgaTp10f4NjA 
_model_server_result.datetime_utc      '2025-03-04 06:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d7l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    9D7L 
#
_exptl.entry_id    9D7L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         103.96 
_cell.angle_beta          100.27 
_cell.angle_gamma         109.32 
_cell.entry_id            9D7L 
_cell.length_a            48.528 
_cell.length_b            54.242 
_cell.length_c            75.6 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D7L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 139 A LYS 265 1_555 C C02 A1BC6 . A A1BC6 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 doub 
covale ? covale2 B NZ LYS 139 B LYS 265 1_555 E C02 A1BC6 . B A1BC6 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 doub 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 192 n n 
C O2 FMT sing 193 n n 
C H FMT sing 194 n n 
O2 HO2 FMT sing 195 n n 
#
_atom_sites.entry_id                     9D7L 
_atom_sites.fract_transf_matrix[1][1]    0.020607 
_atom_sites.fract_transf_matrix[1][2]    0.007224 
_atom_sites.fract_transf_matrix[1][3]    0.006414 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019536 
_atom_sites.fract_transf_matrix[2][3]    0.006675 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1BC6 A 1 601 601 A1BC6 FDA . 
D 3 FMT A 1 602 603 FMT FMT . 
E 2 A1BC6 B 1 601 601 A1BC6 FDA . 
F 3 FMT B 1 602 603 FMT FMT . 
G 4 HOH A 1 701 289 HOH HOH . 
G 4 HOH A 2 702 178 HOH HOH . 
G 4 HOH A 3 703 96 HOH HOH . 
G 4 HOH A 4 704 101 HOH HOH . 
G 4 HOH A 5 705 130 HOH HOH . 
G 4 HOH A 6 706 262 HOH HOH . 
G 4 HOH A 7 707 80 HOH HOH . 
G 4 HOH A 8 708 59 HOH HOH . 
G 4 HOH A 9 709 144 HOH HOH . 
G 4 HOH A 10 710 28 HOH HOH . 
G 4 HOH A 11 711 49 HOH HOH . 
G 4 HOH A 12 712 232 HOH HOH . 
G 4 HOH A 13 713 60 HOH HOH . 
G 4 HOH A 14 714 107 HOH HOH . 
G 4 HOH A 15 715 57 HOH HOH . 
G 4 HOH A 16 716 159 HOH HOH . 
G 4 HOH A 17 717 256 HOH HOH . 
G 4 HOH A 18 718 255 HOH HOH . 
G 4 HOH A 19 719 79 HOH HOH . 
G 4 HOH A 20 720 218 HOH HOH . 
G 4 HOH A 21 721 7 HOH HOH . 
G 4 HOH A 22 722 75 HOH HOH . 
G 4 HOH A 23 723 146 HOH HOH . 
G 4 HOH A 24 724 253 HOH HOH . 
G 4 HOH A 25 725 43 HOH HOH . 
G 4 HOH A 26 726 87 HOH HOH . 
G 4 HOH A 27 727 176 HOH HOH . 
G 4 HOH A 28 728 6 HOH HOH . 
G 4 HOH A 29 729 220 HOH HOH . 
G 4 HOH A 30 730 3 HOH HOH . 
G 4 HOH A 31 731 123 HOH HOH . 
G 4 HOH A 32 732 259 HOH HOH . 
G 4 HOH A 33 733 99 HOH HOH . 
G 4 HOH A 34 734 72 HOH HOH . 
G 4 HOH A 35 735 171 HOH HOH . 
G 4 HOH A 36 736 76 HOH HOH . 
G 4 HOH A 37 737 164 HOH HOH . 
G 4 HOH A 38 738 4 HOH HOH . 
G 4 HOH A 39 739 222 HOH HOH . 
G 4 HOH A 40 740 267 HOH HOH . 
G 4 HOH A 41 741 106 HOH HOH . 
G 4 HOH A 42 742 117 HOH HOH . 
G 4 HOH A 43 743 266 HOH HOH . 
G 4 HOH A 44 744 145 HOH HOH . 
G 4 HOH A 45 745 244 HOH HOH . 
G 4 HOH A 46 746 143 HOH HOH . 
G 4 HOH A 47 747 52 HOH HOH . 
G 4 HOH A 48 748 2 HOH HOH . 
G 4 HOH A 49 749 92 HOH HOH . 
G 4 HOH A 50 750 29 HOH HOH . 
G 4 HOH A 51 751 168 HOH HOH . 
G 4 HOH A 52 752 125 HOH HOH . 
G 4 HOH A 53 753 216 HOH HOH . 
G 4 HOH A 54 754 37 HOH HOH . 
G 4 HOH A 55 755 31 HOH HOH . 
G 4 HOH A 56 756 105 HOH HOH . 
G 4 HOH A 57 757 64 HOH HOH . 
G 4 HOH A 58 758 63 HOH HOH . 
G 4 HOH A 59 759 226 HOH HOH . 
G 4 HOH A 60 760 81 HOH HOH . 
G 4 HOH A 61 761 207 HOH HOH . 
G 4 HOH A 62 762 177 HOH HOH . 
G 4 HOH A 63 763 173 HOH HOH . 
G 4 HOH A 64 764 271 HOH HOH . 
G 4 HOH A 65 765 9 HOH HOH . 
G 4 HOH A 66 766 90 HOH HOH . 
G 4 HOH A 67 767 134 HOH HOH . 
G 4 HOH A 68 768 196 HOH HOH . 
G 4 HOH A 69 769 24 HOH HOH . 
G 4 HOH A 70 770 40 HOH HOH . 
G 4 HOH A 71 771 86 HOH HOH . 
G 4 HOH A 72 772 27 HOH HOH . 
G 4 HOH A 73 773 198 HOH HOH . 
G 4 HOH A 74 774 16 HOH HOH . 
G 4 HOH A 75 775 68 HOH HOH . 
G 4 HOH A 76 776 188 HOH HOH . 
G 4 HOH A 77 777 228 HOH HOH . 
G 4 HOH A 78 778 5 HOH HOH . 
G 4 HOH A 79 779 88 HOH HOH . 
G 4 HOH A 80 780 22 HOH HOH . 
G 4 HOH A 81 781 128 HOH HOH . 
G 4 HOH A 82 782 169 HOH HOH . 
G 4 HOH A 83 783 47 HOH HOH . 
G 4 HOH A 84 784 233 HOH HOH . 
G 4 HOH A 85 785 122 HOH HOH . 
G 4 HOH A 86 786 44 HOH HOH . 
G 4 HOH A 87 787 58 HOH HOH . 
G 4 HOH A 88 788 71 HOH HOH . 
G 4 HOH A 89 789 167 HOH HOH . 
G 4 HOH A 90 790 12 HOH HOH . 
G 4 HOH A 91 791 102 HOH HOH . 
G 4 HOH A 92 792 36 HOH HOH . 
G 4 HOH A 93 793 240 HOH HOH . 
G 4 HOH A 94 794 73 HOH HOH . 
G 4 HOH A 95 795 110 HOH HOH . 
G 4 HOH A 96 796 170 HOH HOH . 
G 4 HOH A 97 797 11 HOH HOH . 
G 4 HOH A 98 798 84 HOH HOH . 
G 4 HOH A 99 799 119 HOH HOH . 
G 4 HOH A 100 800 141 HOH HOH . 
G 4 HOH A 101 801 179 HOH HOH . 
G 4 HOH A 102 802 139 HOH HOH . 
G 4 HOH A 103 803 120 HOH HOH . 
G 4 HOH A 104 804 89 HOH HOH . 
G 4 HOH A 105 805 183 HOH HOH . 
G 4 HOH A 106 806 208 HOH HOH . 
G 4 HOH A 107 807 189 HOH HOH . 
G 4 HOH A 108 808 23 HOH HOH . 
G 4 HOH A 109 809 270 HOH HOH . 
G 4 HOH A 110 810 166 HOH HOH . 
G 4 HOH A 111 811 152 HOH HOH . 
G 4 HOH A 112 812 211 HOH HOH . 
G 4 HOH A 113 813 181 HOH HOH . 
G 4 HOH A 114 814 190 HOH HOH . 
G 4 HOH A 115 815 163 HOH HOH . 
G 4 HOH A 116 816 140 HOH HOH . 
G 4 HOH A 117 817 234 HOH HOH . 
G 4 HOH A 118 818 195 HOH HOH . 
G 4 HOH A 119 819 54 HOH HOH . 
G 4 HOH A 120 820 246 HOH HOH . 
G 4 HOH A 121 821 85 HOH HOH . 
G 4 HOH A 122 822 138 HOH HOH . 
G 4 HOH A 123 823 263 HOH HOH . 
G 4 HOH A 124 824 277 HOH HOH . 
G 4 HOH A 125 825 280 HOH HOH . 
G 4 HOH A 126 826 83 HOH HOH . 
G 4 HOH A 127 827 243 HOH HOH . 
G 4 HOH A 128 828 184 HOH HOH . 
G 4 HOH A 129 829 229 HOH HOH . 
G 4 HOH A 130 830 214 HOH HOH . 
G 4 HOH A 131 831 239 HOH HOH . 
G 4 HOH A 132 832 241 HOH HOH . 
G 4 HOH A 133 833 192 HOH HOH . 
G 4 HOH A 134 834 245 HOH HOH . 
G 4 HOH A 135 835 104 HOH HOH . 
G 4 HOH A 136 836 275 HOH HOH . 
G 4 HOH A 137 837 124 HOH HOH . 
G 4 HOH A 138 838 223 HOH HOH . 
G 4 HOH A 139 839 230 HOH HOH . 
G 4 HOH A 140 840 67 HOH HOH . 
G 4 HOH A 141 841 200 HOH HOH . 
G 4 HOH A 142 842 278 HOH HOH . 
G 4 HOH A 143 843 212 HOH HOH . 
H 4 HOH B 1 701 264 HOH HOH . 
H 4 HOH B 2 702 30 HOH HOH . 
H 4 HOH B 3 703 172 HOH HOH . 
H 4 HOH B 4 704 191 HOH HOH . 
H 4 HOH B 5 705 268 HOH HOH . 
H 4 HOH B 6 706 111 HOH HOH . 
H 4 HOH B 7 707 18 HOH HOH . 
H 4 HOH B 8 708 45 HOH HOH . 
H 4 HOH B 9 709 14 HOH HOH . 
H 4 HOH B 10 710 282 HOH HOH . 
H 4 HOH B 11 711 121 HOH HOH . 
H 4 HOH B 12 712 53 HOH HOH . 
H 4 HOH B 13 713 257 HOH HOH . 
H 4 HOH B 14 714 155 HOH HOH . 
H 4 HOH B 15 715 56 HOH HOH . 
H 4 HOH B 16 716 247 HOH HOH . 
H 4 HOH B 17 717 199 HOH HOH . 
H 4 HOH B 18 718 202 HOH HOH . 
H 4 HOH B 19 719 156 HOH HOH . 
H 4 HOH B 20 720 19 HOH HOH . 
H 4 HOH B 21 721 65 HOH HOH . 
H 4 HOH B 22 722 91 HOH HOH . 
H 4 HOH B 23 723 187 HOH HOH . 
H 4 HOH B 24 724 42 HOH HOH . 
H 4 HOH B 25 725 35 HOH HOH . 
H 4 HOH B 26 726 39 HOH HOH . 
H 4 HOH B 27 727 224 HOH HOH . 
H 4 HOH B 28 728 205 HOH HOH . 
H 4 HOH B 29 729 51 HOH HOH . 
H 4 HOH B 30 730 32 HOH HOH . 
H 4 HOH B 31 731 142 HOH HOH . 
H 4 HOH B 32 732 34 HOH HOH . 
H 4 HOH B 33 733 61 HOH HOH . 
H 4 HOH B 34 734 1 HOH HOH . 
H 4 HOH B 35 735 132 HOH HOH . 
H 4 HOH B 36 736 108 HOH HOH . 
H 4 HOH B 37 737 20 HOH HOH . 
H 4 HOH B 38 738 165 HOH HOH . 
H 4 HOH B 39 739 276 HOH HOH . 
H 4 HOH B 40 740 15 HOH HOH . 
H 4 HOH B 41 741 158 HOH HOH . 
H 4 HOH B 42 742 260 HOH HOH . 
H 4 HOH B 43 743 10 HOH HOH . 
H 4 HOH B 44 744 154 HOH HOH . 
H 4 HOH B 45 745 151 HOH HOH . 
H 4 HOH B 46 746 13 HOH HOH . 
H 4 HOH B 47 747 210 HOH HOH . 
H 4 HOH B 48 748 286 HOH HOH . 
H 4 HOH B 49 749 8 HOH HOH . 
H 4 HOH B 50 750 62 HOH HOH . 
H 4 HOH B 51 751 193 HOH HOH . 
H 4 HOH B 52 752 94 HOH HOH . 
H 4 HOH B 53 753 55 HOH HOH . 
H 4 HOH B 54 754 17 HOH HOH . 
H 4 HOH B 55 755 21 HOH HOH . 
H 4 HOH B 56 756 265 HOH HOH . 
H 4 HOH B 57 757 127 HOH HOH . 
H 4 HOH B 58 758 115 HOH HOH . 
H 4 HOH B 59 759 251 HOH HOH . 
H 4 HOH B 60 760 26 HOH HOH . 
H 4 HOH B 61 761 100 HOH HOH . 
H 4 HOH B 62 762 38 HOH HOH . 
H 4 HOH B 63 763 153 HOH HOH . 
H 4 HOH B 64 764 66 HOH HOH . 
H 4 HOH B 65 765 281 HOH HOH . 
H 4 HOH B 66 766 95 HOH HOH . 
H 4 HOH B 67 767 70 HOH HOH . 
H 4 HOH B 68 768 157 HOH HOH . 
H 4 HOH B 69 769 74 HOH HOH . 
H 4 HOH B 70 770 129 HOH HOH . 
H 4 HOH B 71 771 269 HOH HOH . 
H 4 HOH B 72 772 126 HOH HOH . 
H 4 HOH B 73 773 136 HOH HOH . 
H 4 HOH B 74 774 114 HOH HOH . 
H 4 HOH B 75 775 69 HOH HOH . 
H 4 HOH B 76 776 182 HOH HOH . 
H 4 HOH B 77 777 174 HOH HOH . 
H 4 HOH B 78 778 33 HOH HOH . 
H 4 HOH B 79 779 77 HOH HOH . 
H 4 HOH B 80 780 46 HOH HOH . 
H 4 HOH B 81 781 273 HOH HOH . 
H 4 HOH B 82 782 41 HOH HOH . 
H 4 HOH B 83 783 25 HOH HOH . 
H 4 HOH B 84 784 180 HOH HOH . 
H 4 HOH B 85 785 112 HOH HOH . 
H 4 HOH B 86 786 113 HOH HOH . 
H 4 HOH B 87 787 97 HOH HOH . 
H 4 HOH B 88 788 201 HOH HOH . 
H 4 HOH B 89 789 215 HOH HOH . 
H 4 HOH B 90 790 48 HOH HOH . 
H 4 HOH B 91 791 109 HOH HOH . 
H 4 HOH B 92 792 231 HOH HOH . 
H 4 HOH B 93 793 162 HOH HOH . 
H 4 HOH B 94 794 82 HOH HOH . 
H 4 HOH B 95 795 186 HOH HOH . 
H 4 HOH B 96 796 221 HOH HOH . 
H 4 HOH B 97 797 194 HOH HOH . 
H 4 HOH B 98 798 197 HOH HOH . 
H 4 HOH B 99 799 219 HOH HOH . 
H 4 HOH B 100 800 213 HOH HOH . 
H 4 HOH B 101 801 160 HOH HOH . 
H 4 HOH B 102 802 225 HOH HOH . 
H 4 HOH B 103 803 116 HOH HOH . 
H 4 HOH B 104 804 285 HOH HOH . 
H 4 HOH B 105 805 78 HOH HOH . 
H 4 HOH B 106 806 217 HOH HOH . 
H 4 HOH B 107 807 238 HOH HOH . 
H 4 HOH B 108 808 242 HOH HOH . 
H 4 HOH B 109 809 137 HOH HOH . 
H 4 HOH B 110 810 249 HOH HOH . 
H 4 HOH B 111 811 250 HOH HOH . 
H 4 HOH B 112 812 209 HOH HOH . 
H 4 HOH B 113 813 93 HOH HOH . 
H 4 HOH B 114 814 248 HOH HOH . 
H 4 HOH B 115 815 185 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . D 3 14.987 15.271 45.831 0.85 30.22 ? C FMT 602 A 1 
HETATM 2 O O1 FMT . . . D 3 14.85 14.11 46.192 0.85 38.93 ? O1 FMT 602 A 1 
HETATM 3 O O2 FMT . . . D 3 15.587 15.53 44.805 0.85 37.25 ? O2 FMT 602 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           3 
#