data_9D86 # _model_server_result.job_id 0LpF1WoXcXqny1QzQJBQoQ _model_server_result.datetime_utc '2025-01-22 18:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9D86 # _exptl.entry_id 9D86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9D86 _cell.length_a 52.742 _cell.length_b 104.97 _cell.length_c 73.678 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 87 A CYS 87 1_555 B FE2 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A SG CYS 90 A CYS 90 1_555 B FE3 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A SG CYS 169 A CYS 169 1_555 B FE1 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A SG CYS 171 A CYS 171 1_555 B FE4 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 9D86 _atom_sites.fract_transf_matrix[1][1] 0.01896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SF4 A 1 201 201 SF4 SF4 . C 3 HOH A 1 301 21 HOH HOH . C 3 HOH A 2 302 38 HOH HOH . C 3 HOH A 3 303 26 HOH HOH . C 3 HOH A 4 304 37 HOH HOH . C 3 HOH A 5 305 16 HOH HOH . C 3 HOH A 6 306 35 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 24 HOH HOH . C 3 HOH A 9 309 27 HOH HOH . C 3 HOH A 10 310 30 HOH HOH . C 3 HOH A 11 311 13 HOH HOH . C 3 HOH A 12 312 3 HOH HOH . C 3 HOH A 13 313 14 HOH HOH . C 3 HOH A 14 314 22 HOH HOH . C 3 HOH A 15 315 4 HOH HOH . C 3 HOH A 16 316 7 HOH HOH . C 3 HOH A 17 317 2 HOH HOH . C 3 HOH A 18 318 5 HOH HOH . C 3 HOH A 19 319 1 HOH HOH . C 3 HOH A 20 320 19 HOH HOH . C 3 HOH A 21 321 28 HOH HOH . C 3 HOH A 22 322 29 HOH HOH . C 3 HOH A 23 323 10 HOH HOH . C 3 HOH A 24 324 8 HOH HOH . C 3 HOH A 25 325 18 HOH HOH . C 3 HOH A 26 326 17 HOH HOH . C 3 HOH A 27 327 34 HOH HOH . C 3 HOH A 28 328 23 HOH HOH . C 3 HOH A 29 329 11 HOH HOH . C 3 HOH A 30 330 12 HOH HOH . C 3 HOH A 31 331 6 HOH HOH . C 3 HOH A 32 332 15 HOH HOH . C 3 HOH A 33 333 25 HOH HOH . C 3 HOH A 34 334 32 HOH HOH . C 3 HOH A 35 335 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . B 2 -6.8 -11.926 2.061 1 38.2 ? FE1 SF4 201 A 1 HETATM 2 FE FE2 SF4 . . . B 2 -4.18 -12.191 2.757 1 40.19 ? FE2 SF4 201 A 1 HETATM 3 FE FE3 SF4 . . . B 2 -6.054 -11.716 4.628 1 35.21 ? FE3 SF4 201 A 1 HETATM 4 FE FE4 SF4 . . . B 2 -5.402 -9.751 2.895 1 36.68 ? FE4 SF4 201 A 1 HETATM 5 S S1 SF4 . . . B 2 -4.026 -10.67 4.461 1 40.81 ? S1 SF4 201 A 1 HETATM 6 S S2 SF4 . . . B 2 -7.538 -10.335 3.531 1 34.86 ? S2 SF4 201 A 1 HETATM 7 S S3 SF4 . . . B 2 -4.978 -10.955 1.021 1 41.99 ? S3 SF4 201 A 1 HETATM 8 S S4 SF4 . . . B 2 -5.911 -13.613 3.356 1 38.35 ? S4 SF4 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #