data_9D88 # _model_server_result.job_id VOaxLng41drphGhTmY6nJQ _model_server_result.datetime_utc '2024-12-01 01:21:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 9D88 # _exptl.entry_id 9D88 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9D88 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 188 B CYS 198 1_555 B SG CYS 208 B CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 F SG CYS 188 F CYS 198 1_555 F SG CYS 208 F CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 I SG CYS 188 I CYS 198 1_555 I SG CYS 208 I CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 L SG CYS 188 L CYS 198 1_555 L SG CYS 208 L CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 O SG CYS 188 O CYS 198 1_555 O SG CYS 208 O CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 R SG CYS 188 R CYS 198 1_555 R SG CYS 208 R CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 150 n n C1 C6 IHP sing 151 n n C1 O11 IHP sing 152 n n C1 H1 IHP sing 153 n n C2 C3 IHP sing 154 n n C2 O12 IHP sing 155 n n C2 H2 IHP sing 156 n n C3 C4 IHP sing 157 n n C3 O13 IHP sing 158 n n C3 H3 IHP sing 159 n n C4 C5 IHP sing 160 n n C4 O14 IHP sing 161 n n C4 H4 IHP sing 162 n n C5 C6 IHP sing 163 n n C5 O15 IHP sing 164 n n C5 H5 IHP sing 165 n n C6 O16 IHP sing 166 n n C6 H6 IHP sing 167 n n O11 P1 IHP sing 168 n n P1 O21 IHP doub 169 n n P1 O31 IHP sing 170 n n P1 O41 IHP sing 171 n n O31 H31 IHP sing 172 n n O41 H41 IHP sing 173 n n O12 P2 IHP sing 174 n n P2 O22 IHP doub 175 n n P2 O32 IHP sing 176 n n P2 O42 IHP sing 177 n n O32 H32 IHP sing 178 n n O42 H42 IHP sing 179 n n O13 P3 IHP sing 180 n n P3 O23 IHP doub 181 n n P3 O33 IHP sing 182 n n P3 O43 IHP sing 183 n n O33 H33 IHP sing 184 n n O43 H43 IHP sing 185 n n O14 P4 IHP sing 186 n n P4 O24 IHP doub 187 n n P4 O34 IHP sing 188 n n P4 O44 IHP sing 189 n n O34 H34 IHP sing 190 n n O44 H44 IHP sing 191 n n O15 P5 IHP sing 192 n n P5 O25 IHP doub 193 n n P5 O35 IHP sing 194 n n P5 O45 IHP sing 195 n n O35 H35 IHP sing 196 n n O45 H45 IHP sing 197 n n O16 P6 IHP sing 198 n n P6 O26 IHP doub 199 n n P6 O36 IHP sing 200 n n P6 O46 IHP sing 201 n n O36 H36 IHP sing 202 n n O46 H46 IHP sing 203 n n # _atom_sites.entry_id 9D88 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id S _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id IHP _pdbx_nonpoly_scheme.pdb_strand_id P _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id IHP _pdbx_nonpoly_scheme.auth_mon_id IHP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . S 2 150.012 149.097 156.156 1 168.66 ? C1 IHP 401 P 1 HETATM 2 C C2 IHP . . . S 2 149.31 150.239 155.428 1 165.38 ? C2 IHP 401 P 1 HETATM 3 C C3 IHP . . . S 2 149.321 151.529 156.22 1 167.03 ? C3 IHP 401 P 1 HETATM 4 C C4 IHP . . . S 2 150.814 151.962 156.307 1 165.63 ? C4 IHP 401 P 1 HETATM 5 C C5 IHP . . . S 2 151.738 150.864 156.865 1 170.1 ? C5 IHP 401 P 1 HETATM 6 C C6 IHP . . . S 2 151.508 149.481 156.232 1 170.61 ? C6 IHP 401 P 1 HETATM 7 O O11 IHP . . . S 2 149.836 147.877 155.578 1 171.45 ? O11 IHP 401 P 1 HETATM 8 P P1 IHP . . . S 2 148.613 146.855 155.966 1 171.51 ? P1 IHP 401 P 1 HETATM 9 O O21 IHP . . . S 2 149.036 145.958 157.127 1 154.48 ? O21 IHP 401 P 1 HETATM 10 O O31 IHP . . . S 2 147.333 147.627 156.387 1 153.52 ? O31 IHP 401 P 1 HETATM 11 O O41 IHP . . . S 2 148.205 145.99 154.76 1 152.72 ? O41 IHP 401 P 1 HETATM 12 O O12 IHP . . . S 2 149.893 150.481 154.184 1 163.89 ? O12 IHP 401 P 1 HETATM 13 P P2 IHP . . . S 2 149.285 149.748 152.845 1 190.34 ? P2 IHP 401 P 1 HETATM 14 O O22 IHP . . . S 2 149.587 148.257 152.831 1 178.1 ? O22 IHP 401 P 1 HETATM 15 O O32 IHP . . . S 2 149.759 150.423 151.559 1 187.21 ? O32 IHP 401 P 1 HETATM 16 O O42 IHP . . . S 2 147.737 149.927 152.955 1 174.59 ? O42 IHP 401 P 1 HETATM 17 O O13 IHP . . . S 2 148.456 152.463 155.773 1 167.89 ? O13 IHP 401 P 1 HETATM 18 P P3 IHP . . . S 2 146.91 152.56 156.319 1 176.6 ? P3 IHP 401 P 1 HETATM 19 O O23 IHP . . . S 2 146.155 151.231 156.15 1 152.26 ? O23 IHP 401 P 1 HETATM 20 O O33 IHP . . . S 2 146.856 152.937 157.812 1 166.23 ? O33 IHP 401 P 1 HETATM 21 O O43 IHP . . . S 2 146.169 153.65 155.515 1 151.98 ? O43 IHP 401 P 1 HETATM 22 O O14 IHP . . . S 2 150.927 153.088 157.098 1 167.39 ? O14 IHP 401 P 1 HETATM 23 P P4 IHP . . . S 2 151.098 154.584 156.466 1 170.63 ? P4 IHP 401 P 1 HETATM 24 O O24 IHP . . . S 2 149.739 155.04 155.955 1 152.39 ? O24 IHP 401 P 1 HETATM 25 O O34 IHP . . . S 2 152.176 154.601 155.364 1 152.27 ? O34 IHP 401 P 1 HETATM 26 O O44 IHP . . . S 2 151.58 155.612 157.525 1 158.75 ? O44 IHP 401 P 1 HETATM 27 O O15 IHP . . . S 2 153.08 151.196 156.796 1 165.91 ? O15 IHP 401 P 1 HETATM 28 P P5 IHP . . . S 2 154.019 151.029 155.471 1 168.86 ? P5 IHP 401 P 1 HETATM 29 O O25 IHP . . . S 2 154.654 149.645 155.398 1 156.51 ? O25 IHP 401 P 1 HETATM 30 O O35 IHP . . . S 2 155.109 152.115 155.581 1 146.77 ? O35 IHP 401 P 1 HETATM 31 O O45 IHP . . . S 2 153.268 151.306 154.143 1 161.47 ? O45 IHP 401 P 1 HETATM 32 O O16 IHP . . . S 2 152.213 148.539 156.954 1 174.9 ? O16 IHP 401 P 1 HETATM 33 P P6 IHP . . . S 2 152.812 147.164 156.332 1 170.62 ? P6 IHP 401 P 1 HETATM 34 O O26 IHP . . . S 2 151.968 145.949 156.683 1 148.05 ? O26 IHP 401 P 1 HETATM 35 O O36 IHP . . . S 2 152.915 147.273 154.791 1 161.37 ? O36 IHP 401 P 1 HETATM 36 O O46 IHP . . . S 2 154.24 146.97 156.886 1 153.96 ? O46 IHP 401 P 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #