data_9D8C # _model_server_result.job_id ompjWfK21Cxo2yuw5CusYQ _model_server_result.datetime_utc '2024-12-22 13:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9D8C # _exptl.entry_id 9D8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.19 _cell.angle_gamma 90 _cell.entry_id 9D8C _cell.length_a 37.147 _cell.length_b 66.106 _cell.length_c 193.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 83 A SER 83 1_555 E C7 Y33 . A Y33 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 B OG SER 83 B SER 83 1_555 F C7 Y33 . B Y33 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 C OG SER 83 C SER 83 1_555 G C7 Y33 . C Y33 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? covale ? covale4 D OG SER 83 D SER 83 1_555 H C7 Y33 . D Y33 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C17 H27 N3 O6 S' _chem_comp.formula_weight 401.478 _chem_comp.id Y33 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-5-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 C31 Y33 doub 376 n n C31 O32 Y33 sing 377 n n C31 C3 Y33 sing 378 n n C7 O7 Y33 doub 379 n n C7 C6 Y33 sing 380 n n N4 C3 Y33 sing 381 n n N4 C5 Y33 sing 382 n n C3 C2 Y33 doub 383 n n C26 C5 Y33 sing 384 n n C5 C6 Y33 sing 385 n n C5 C1 Y33 sing 386 n n C6 C61 Y33 sing 387 n n C62 C61 Y33 sing 388 n n C61 O62 Y33 sing 389 n n C2 C1 Y33 sing 390 n n C2 S21 Y33 sing 391 n n N3A C2A Y33 sing 392 n n N3A C5A Y33 sing 393 n n O6A C6A Y33 doub 394 n n C2A C1A Y33 sing 395 n n S21 C1A Y33 sing 396 n n C6A C5A Y33 sing 397 n n C6A N7A Y33 sing 398 n n C5A C4A Y33 sing 399 n n C1A C4A Y33 sing 400 n n C8A N7A Y33 sing 401 n n N7A C9A Y33 sing 402 n n C1 H1 Y33 sing 403 n n C1 H2 Y33 sing 404 n n N4 H5 Y33 sing 405 n n C6 H7 Y33 sing 406 n n C26 H9 Y33 sing 407 n n C26 H10 Y33 sing 408 n n C26 H11 Y33 sing 409 n n C61 H12 Y33 sing 410 n n C62 H13 Y33 sing 411 n n C62 H14 Y33 sing 412 n n C62 H15 Y33 sing 413 n n O32 H16 Y33 sing 414 n n O62 H17 Y33 sing 415 n n C1A H18 Y33 sing 416 n n C2A H19 Y33 sing 417 n n C2A H20 Y33 sing 418 n n C4A H21 Y33 sing 419 n n C4A H22 Y33 sing 420 n n C5A H23 Y33 sing 421 n n C8A H24 Y33 sing 422 n n C8A H25 Y33 sing 423 n n C8A H26 Y33 sing 424 n n C9A H27 Y33 sing 425 n n C9A H28 Y33 sing 426 n n C9A H29 Y33 sing 427 n n N3A H30 Y33 sing 428 n n C7 O7A Y33 sing 429 n n O7A H8 Y33 sing 430 n n # _atom_sites.entry_id 9D8C _atom_sites.fract_transf_matrix[1][1] 0.02692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015127 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y33 A 1 301 301 Y33 Y33 . F 2 Y33 B 1 301 301 Y33 Y33 . G 2 Y33 C 1 301 301 Y33 Y33 . H 2 Y33 D 1 301 301 Y33 Y33 . I 3 HOH A 1 401 58 HOH HOH . I 3 HOH A 2 402 75 HOH HOH . I 3 HOH A 3 403 16 HOH HOH . I 3 HOH A 4 404 9 HOH HOH . I 3 HOH A 5 405 52 HOH HOH . I 3 HOH A 6 406 47 HOH HOH . I 3 HOH A 7 407 22 HOH HOH . I 3 HOH A 8 408 13 HOH HOH . I 3 HOH A 9 409 1 HOH HOH . I 3 HOH A 10 410 80 HOH HOH . I 3 HOH A 11 411 53 HOH HOH . I 3 HOH A 12 412 57 HOH HOH . I 3 HOH A 13 413 69 HOH HOH . I 3 HOH A 14 414 59 HOH HOH . I 3 HOH A 15 415 44 HOH HOH . I 3 HOH A 16 416 56 HOH HOH . I 3 HOH A 17 417 34 HOH HOH . I 3 HOH A 18 418 5 HOH HOH . J 3 HOH B 1 401 21 HOH HOH . J 3 HOH B 2 402 29 HOH HOH . J 3 HOH B 3 403 83 HOH HOH . J 3 HOH B 4 404 19 HOH HOH . J 3 HOH B 5 405 8 HOH HOH . J 3 HOH B 6 406 30 HOH HOH . J 3 HOH B 7 407 79 HOH HOH . J 3 HOH B 8 408 72 HOH HOH . J 3 HOH B 9 409 81 HOH HOH . J 3 HOH B 10 410 32 HOH HOH . J 3 HOH B 11 411 76 HOH HOH . J 3 HOH B 12 412 51 HOH HOH . J 3 HOH B 13 413 14 HOH HOH . J 3 HOH B 14 414 82 HOH HOH . J 3 HOH B 15 415 77 HOH HOH . J 3 HOH B 16 416 61 HOH HOH . J 3 HOH B 17 417 46 HOH HOH . J 3 HOH B 18 418 73 HOH HOH . J 3 HOH B 19 419 66 HOH HOH . J 3 HOH B 20 420 24 HOH HOH . J 3 HOH B 21 421 65 HOH HOH . J 3 HOH B 22 422 31 HOH HOH . J 3 HOH B 23 423 26 HOH HOH . J 3 HOH B 24 424 17 HOH HOH . J 3 HOH B 25 425 64 HOH HOH . J 3 HOH B 26 426 87 HOH HOH . J 3 HOH B 27 427 40 HOH HOH . J 3 HOH B 28 428 2 HOH HOH . J 3 HOH B 29 429 6 HOH HOH . J 3 HOH B 30 430 84 HOH HOH . J 3 HOH B 31 431 63 HOH HOH . K 3 HOH C 1 401 12 HOH HOH . K 3 HOH C 2 402 49 HOH HOH . K 3 HOH C 3 403 23 HOH HOH . K 3 HOH C 4 404 18 HOH HOH . K 3 HOH C 5 405 78 HOH HOH . K 3 HOH C 6 406 20 HOH HOH . K 3 HOH C 7 407 60 HOH HOH . K 3 HOH C 8 408 38 HOH HOH . K 3 HOH C 9 409 15 HOH HOH . K 3 HOH C 10 410 37 HOH HOH . K 3 HOH C 11 411 36 HOH HOH . K 3 HOH C 12 412 25 HOH HOH . K 3 HOH C 13 413 50 HOH HOH . K 3 HOH C 14 414 27 HOH HOH . K 3 HOH C 15 415 10 HOH HOH . K 3 HOH C 16 416 3 HOH HOH . K 3 HOH C 17 417 43 HOH HOH . K 3 HOH C 18 418 39 HOH HOH . K 3 HOH C 19 419 28 HOH HOH . K 3 HOH C 20 420 7 HOH HOH . K 3 HOH C 21 421 85 HOH HOH . K 3 HOH C 22 422 48 HOH HOH . K 3 HOH C 23 423 54 HOH HOH . K 3 HOH C 24 424 55 HOH HOH . K 3 HOH C 25 425 35 HOH HOH . K 3 HOH C 26 426 88 HOH HOH . L 3 HOH D 1 401 4 HOH HOH . L 3 HOH D 2 402 62 HOH HOH . L 3 HOH D 3 403 42 HOH HOH . L 3 HOH D 4 404 33 HOH HOH . L 3 HOH D 5 405 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 Y33 . . . E 2 -2.279 -12.536 59.788 0.86 43.66 ? C1 Y33 301 A 1 HETATM 2 C C2 Y33 . . . E 2 -2.287 -12.914 61.246 0.86 46.2 ? C2 Y33 301 A 1 HETATM 3 C C3 Y33 . . . E 2 -2.751 -11.905 61.975 0.86 43.48 ? C3 Y33 301 A 1 HETATM 4 N N4 Y33 . . . E 2 -3.075 -10.869 61.22 0.86 42.4 ? N4 Y33 301 A 1 HETATM 5 C C5 Y33 . . . E 2 -2.946 -11.15 59.806 0.86 42.08 ? C5 Y33 301 A 1 HETATM 6 C C6 Y33 . . . E 2 -2.033 -10.047 59.288 0.86 40.74 ? C6 Y33 301 A 1 HETATM 7 C C7 Y33 . . . E 2 -2.602 -8.733 59.785 0.86 38.89 ? C7 Y33 301 A 1 HETATM 8 C C26 Y33 . . . E 2 -4.367 -11.15 59.242 0.86 44.45 ? C26 Y33 301 A 1 HETATM 9 C C31 Y33 . . . E 2 -2.917 -11.848 63.41 0.86 41.93 ? C31 Y33 301 A 1 HETATM 10 C C61 Y33 . . . E 2 -1.708 -9.923 57.786 0.86 41.14 ? C61 Y33 301 A 1 HETATM 11 C C62 Y33 . . . E 2 -1.971 -11.123 56.872 0.86 41.65 ? C62 Y33 301 A 1 HETATM 12 O O31 Y33 . . . E 2 -3.004 -10.708 63.902 0.86 39.32 ? O31 Y33 301 A 1 HETATM 13 O O32 Y33 . . . E 2 -2.96 -12.886 64.097 0.86 42.76 ? O32 Y33 301 A 1 HETATM 14 O O62 Y33 . . . E 2 -2.379 -8.764 57.285 0.86 41.33 ? O62 Y33 301 A 1 HETATM 15 O O7 Y33 . . . E 2 -1.846 -7.931 60.313 0.86 35.74 ? O7 Y33 301 A 1 HETATM 16 C C1A Y33 . . . E 2 -3.192 -15.525 61.825 0.86 55.55 ? C1A Y33 301 A 1 HETATM 17 C C2A Y33 . . . E 2 -4.341 -15.031 60.943 0.86 54.63 ? C2A Y33 301 A 1 HETATM 18 C C4A Y33 . . . E 2 -3.814 -15.687 63.213 0.86 54.93 ? C4A Y33 301 A 1 HETATM 19 C C5A Y33 . . . E 2 -5.315 -15.824 62.97 0.86 55.88 ? C5A Y33 301 A 1 HETATM 20 C C6A Y33 . . . E 2 -6.149 -15.327 64.126 0.86 58.22 ? C6A Y33 301 A 1 HETATM 21 C C8A Y33 . . . E 2 -7.353 -15.843 66.205 0.86 57.17 ? C8A Y33 301 A 1 HETATM 22 C C9A Y33 . . . E 2 -6.308 -17.651 64.929 0.86 57.66 ? C9A Y33 301 A 1 HETATM 23 N N3A Y33 . . . E 2 -5.574 -15.012 61.764 0.86 55.57 ? N3A Y33 301 A 1 HETATM 24 N N7A Y33 . . . E 2 -6.567 -16.221 65.037 0.86 58.14 ? N7A Y33 301 A 1 HETATM 25 O O6A Y33 . . . E 2 -6.44 -14.138 64.183 0.86 57.56 ? O6A Y33 301 A 1 HETATM 26 S S21 Y33 . . . E 2 -1.799 -14.413 61.803 0.86 51.11 ? S21 Y33 301 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #