data_9D8N # _model_server_result.job_id 5VBghFiJ2PgoWtgkQzJePQ _model_server_result.datetime_utc '2025-02-23 04:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 9D8N # _exptl.entry_id 9D8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.11 _cell.angle_beta 86.5 _cell.angle_gamma 65.1 _cell.entry_id 9D8N _cell.length_a 31.1 _cell.length_b 35.997 _cell.length_c 64.013 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 108 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 108 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C23 _struct_conn.ptnr2_label_comp_id ZFJ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id ZFJ _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.218 _struct_conn.pdbx_value_order doub # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 9D8N _atom_sites.fract_transf_matrix[1][1] 0.032154 _atom_sites.fract_transf_matrix[1][2] -0.014926 _atom_sites.fract_transf_matrix[1][3] -0.001273 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030627 _atom_sites.fract_transf_matrix[2][3] -0.001427 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZFJ A 1 201 201 ZFJ LIG . D 3 GOL A 1 202 301 GOL GOL . E 4 ACY A 1 203 1 ACY ACT . F 4 ACY A 1 204 3 ACY ACT . G 2 ZFJ B 1 401 401 ZFJ LIG . H 3 GOL B 1 402 501 GOL GOL . I 4 ACY B 1 403 2 ACY ACT . J 5 HOH A 1 301 84 HOH HOH . J 5 HOH A 2 302 78 HOH HOH . J 5 HOH A 3 303 167 HOH HOH . J 5 HOH A 4 304 174 HOH HOH . J 5 HOH A 5 305 157 HOH HOH . J 5 HOH A 6 306 127 HOH HOH . J 5 HOH A 7 307 101 HOH HOH . J 5 HOH A 8 308 57 HOH HOH . J 5 HOH A 9 309 39 HOH HOH . J 5 HOH A 10 310 170 HOH HOH . J 5 HOH A 11 311 193 HOH HOH . J 5 HOH A 12 312 124 HOH HOH . J 5 HOH A 13 313 229 HOH HOH . J 5 HOH A 14 314 122 HOH HOH . J 5 HOH A 15 315 27 HOH HOH . J 5 HOH A 16 316 177 HOH HOH . J 5 HOH A 17 317 215 HOH HOH . J 5 HOH A 18 318 33 HOH HOH . J 5 HOH A 19 319 23 HOH HOH . J 5 HOH A 20 320 173 HOH HOH . J 5 HOH A 21 321 63 HOH HOH . J 5 HOH A 22 322 228 HOH HOH . J 5 HOH A 23 323 97 HOH HOH . J 5 HOH A 24 324 113 HOH HOH . J 5 HOH A 25 325 108 HOH HOH . J 5 HOH A 26 326 150 HOH HOH . J 5 HOH A 27 327 217 HOH HOH . J 5 HOH A 28 328 1 HOH HOH . J 5 HOH A 29 329 85 HOH HOH . J 5 HOH A 30 330 95 HOH HOH . J 5 HOH A 31 331 104 HOH HOH . J 5 HOH A 32 332 98 HOH HOH . J 5 HOH A 33 333 28 HOH HOH . J 5 HOH A 34 334 11 HOH HOH . J 5 HOH A 35 335 44 HOH HOH . J 5 HOH A 36 336 62 HOH HOH . J 5 HOH A 37 337 168 HOH HOH . J 5 HOH A 38 338 3 HOH HOH . J 5 HOH A 39 339 4 HOH HOH . J 5 HOH A 40 340 93 HOH HOH . J 5 HOH A 41 341 22 HOH HOH . J 5 HOH A 42 342 60 HOH HOH . J 5 HOH A 43 343 15 HOH HOH . J 5 HOH A 44 344 90 HOH HOH . J 5 HOH A 45 345 32 HOH HOH . J 5 HOH A 46 346 34 HOH HOH . J 5 HOH A 47 347 29 HOH HOH . J 5 HOH A 48 348 195 HOH HOH . J 5 HOH A 49 349 47 HOH HOH . J 5 HOH A 50 350 83 HOH HOH . J 5 HOH A 51 351 192 HOH HOH . J 5 HOH A 52 352 132 HOH HOH . J 5 HOH A 53 353 137 HOH HOH . J 5 HOH A 54 354 9 HOH HOH . J 5 HOH A 55 355 69 HOH HOH . J 5 HOH A 56 356 131 HOH HOH . J 5 HOH A 57 357 53 HOH HOH . J 5 HOH A 58 358 65 HOH HOH . J 5 HOH A 59 359 25 HOH HOH . J 5 HOH A 60 360 13 HOH HOH . J 5 HOH A 61 361 203 HOH HOH . J 5 HOH A 62 362 163 HOH HOH . J 5 HOH A 63 363 181 HOH HOH . J 5 HOH A 64 364 45 HOH HOH . J 5 HOH A 65 365 111 HOH HOH . J 5 HOH A 66 366 49 HOH HOH . J 5 HOH A 67 367 88 HOH HOH . J 5 HOH A 68 368 42 HOH HOH . J 5 HOH A 69 369 112 HOH HOH . J 5 HOH A 70 370 82 HOH HOH . J 5 HOH A 71 371 201 HOH HOH . J 5 HOH A 72 372 40 HOH HOH . J 5 HOH A 73 373 48 HOH HOH . J 5 HOH A 74 374 19 HOH HOH . J 5 HOH A 75 375 139 HOH HOH . J 5 HOH A 76 376 5 HOH HOH . J 5 HOH A 77 377 196 HOH HOH . J 5 HOH A 78 378 96 HOH HOH . J 5 HOH A 79 379 184 HOH HOH . J 5 HOH A 80 380 194 HOH HOH . J 5 HOH A 81 381 61 HOH HOH . J 5 HOH A 82 382 216 HOH HOH . J 5 HOH A 83 383 41 HOH HOH . J 5 HOH A 84 384 21 HOH HOH . J 5 HOH A 85 385 143 HOH HOH . J 5 HOH A 86 386 128 HOH HOH . J 5 HOH A 87 387 219 HOH HOH . J 5 HOH A 88 388 117 HOH HOH . J 5 HOH A 89 389 107 HOH HOH . J 5 HOH A 90 390 134 HOH HOH . J 5 HOH A 91 391 115 HOH HOH . J 5 HOH A 92 392 164 HOH HOH . J 5 HOH A 93 393 141 HOH HOH . J 5 HOH A 94 394 119 HOH HOH . J 5 HOH A 95 395 183 HOH HOH . J 5 HOH A 96 396 200 HOH HOH . J 5 HOH A 97 397 72 HOH HOH . J 5 HOH A 98 398 191 HOH HOH . J 5 HOH A 99 399 186 HOH HOH . J 5 HOH A 100 400 218 HOH HOH . J 5 HOH A 101 401 156 HOH HOH . J 5 HOH A 102 402 221 HOH HOH . J 5 HOH A 103 403 148 HOH HOH . J 5 HOH A 104 404 222 HOH HOH . J 5 HOH A 105 405 197 HOH HOH . J 5 HOH A 106 406 209 HOH HOH . J 5 HOH A 107 407 175 HOH HOH . J 5 HOH A 108 408 89 HOH HOH . J 5 HOH A 109 409 161 HOH HOH . J 5 HOH A 110 410 202 HOH HOH . J 5 HOH A 111 411 138 HOH HOH . J 5 HOH A 112 412 224 HOH HOH . J 5 HOH A 113 413 94 HOH HOH . J 5 HOH A 114 414 149 HOH HOH . J 5 HOH A 115 415 225 HOH HOH . J 5 HOH A 116 416 199 HOH HOH . J 5 HOH A 117 417 207 HOH HOH . J 5 HOH A 118 418 187 HOH HOH . J 5 HOH A 119 419 206 HOH HOH . K 5 HOH B 1 501 123 HOH HOH . K 5 HOH B 2 502 220 HOH HOH . K 5 HOH B 3 503 55 HOH HOH . K 5 HOH B 4 504 185 HOH HOH . K 5 HOH B 5 505 144 HOH HOH . K 5 HOH B 6 506 79 HOH HOH . K 5 HOH B 7 507 76 HOH HOH . K 5 HOH B 8 508 223 HOH HOH . K 5 HOH B 9 509 182 HOH HOH . K 5 HOH B 10 510 125 HOH HOH . K 5 HOH B 11 511 67 HOH HOH . K 5 HOH B 12 512 68 HOH HOH . K 5 HOH B 13 513 50 HOH HOH . K 5 HOH B 14 514 64 HOH HOH . K 5 HOH B 15 515 37 HOH HOH . K 5 HOH B 16 516 56 HOH HOH . K 5 HOH B 17 517 152 HOH HOH . K 5 HOH B 18 518 120 HOH HOH . K 5 HOH B 19 519 99 HOH HOH . K 5 HOH B 20 520 86 HOH HOH . K 5 HOH B 21 521 155 HOH HOH . K 5 HOH B 22 522 38 HOH HOH . K 5 HOH B 23 523 114 HOH HOH . K 5 HOH B 24 524 12 HOH HOH . K 5 HOH B 25 525 20 HOH HOH . K 5 HOH B 26 526 10 HOH HOH . K 5 HOH B 27 527 179 HOH HOH . K 5 HOH B 28 528 17 HOH HOH . K 5 HOH B 29 529 75 HOH HOH . K 5 HOH B 30 530 58 HOH HOH . K 5 HOH B 31 531 100 HOH HOH . K 5 HOH B 32 532 159 HOH HOH . K 5 HOH B 33 533 35 HOH HOH . K 5 HOH B 34 534 8 HOH HOH . K 5 HOH B 35 535 14 HOH HOH . K 5 HOH B 36 536 73 HOH HOH . K 5 HOH B 37 537 2 HOH HOH . K 5 HOH B 38 538 26 HOH HOH . K 5 HOH B 39 539 230 HOH HOH . K 5 HOH B 40 540 74 HOH HOH . K 5 HOH B 41 541 36 HOH HOH . K 5 HOH B 42 542 91 HOH HOH . K 5 HOH B 43 543 46 HOH HOH . K 5 HOH B 44 544 116 HOH HOH . K 5 HOH B 45 545 66 HOH HOH . K 5 HOH B 46 546 6 HOH HOH . K 5 HOH B 47 547 226 HOH HOH . K 5 HOH B 48 548 136 HOH HOH . K 5 HOH B 49 549 24 HOH HOH . K 5 HOH B 50 550 208 HOH HOH . K 5 HOH B 51 551 71 HOH HOH . K 5 HOH B 52 552 188 HOH HOH . K 5 HOH B 53 553 30 HOH HOH . K 5 HOH B 54 554 70 HOH HOH . K 5 HOH B 55 555 18 HOH HOH . K 5 HOH B 56 556 165 HOH HOH . K 5 HOH B 57 557 43 HOH HOH . K 5 HOH B 58 558 80 HOH HOH . K 5 HOH B 59 559 81 HOH HOH . K 5 HOH B 60 560 87 HOH HOH . K 5 HOH B 61 561 106 HOH HOH . K 5 HOH B 62 562 31 HOH HOH . K 5 HOH B 63 563 52 HOH HOH . K 5 HOH B 64 564 54 HOH HOH . K 5 HOH B 65 565 121 HOH HOH . K 5 HOH B 66 566 178 HOH HOH . K 5 HOH B 67 567 169 HOH HOH . K 5 HOH B 68 568 16 HOH HOH . K 5 HOH B 69 569 172 HOH HOH . K 5 HOH B 70 570 147 HOH HOH . K 5 HOH B 71 571 210 HOH HOH . K 5 HOH B 72 572 7 HOH HOH . K 5 HOH B 73 573 77 HOH HOH . K 5 HOH B 74 574 166 HOH HOH . K 5 HOH B 75 575 162 HOH HOH . K 5 HOH B 76 576 92 HOH HOH . K 5 HOH B 77 577 151 HOH HOH . K 5 HOH B 78 578 198 HOH HOH . K 5 HOH B 79 579 190 HOH HOH . K 5 HOH B 80 580 129 HOH HOH . K 5 HOH B 81 581 130 HOH HOH . K 5 HOH B 82 582 171 HOH HOH . K 5 HOH B 83 583 176 HOH HOH . K 5 HOH B 84 584 145 HOH HOH . K 5 HOH B 85 585 227 HOH HOH . K 5 HOH B 86 586 126 HOH HOH . K 5 HOH B 87 587 135 HOH HOH . K 5 HOH B 88 588 140 HOH HOH . K 5 HOH B 89 589 180 HOH HOH . K 5 HOH B 90 590 153 HOH HOH . K 5 HOH B 91 591 205 HOH HOH . K 5 HOH B 92 592 214 HOH HOH . K 5 HOH B 93 593 103 HOH HOH . K 5 HOH B 94 594 133 HOH HOH . K 5 HOH B 95 595 59 HOH HOH . K 5 HOH B 96 596 102 HOH HOH . K 5 HOH B 97 597 204 HOH HOH . K 5 HOH B 98 598 51 HOH HOH . K 5 HOH B 99 599 213 HOH HOH . K 5 HOH B 100 600 105 HOH HOH . K 5 HOH B 101 601 160 HOH HOH . K 5 HOH B 102 602 212 HOH HOH . K 5 HOH B 103 603 189 HOH HOH . K 5 HOH B 104 604 154 HOH HOH . K 5 HOH B 105 605 110 HOH HOH . K 5 HOH B 106 606 118 HOH HOH . K 5 HOH B 107 607 158 HOH HOH . K 5 HOH B 108 608 211 HOH HOH . K 5 HOH B 109 609 109 HOH HOH . K 5 HOH B 110 610 142 HOH HOH . K 5 HOH B 111 611 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . F 4 -2.079 -14.606 17.464 1 27.6 ? C ACY 204 A 1 HETATM 2 O O ACY . . . F 4 -2.887 -14.077 18.257 1 28.96 ? O ACY 204 A 1 HETATM 3 O OXT ACY . . . F 4 -0.871 -14.284 17.551 1 29.75 ? OXT ACY 204 A 1 HETATM 4 C CH3 ACY . . . F 4 -2.549 -15.615 16.409 1 21.53 ? CH3 ACY 204 A 1 HETATM 5 H H1 ACY . . . F 4 -2.722 -16.47 16.833 1 25.87 ? H1 ACY 204 A 1 HETATM 6 H H2 ACY . . . F 4 -3.362 -15.291 15.991 1 25.87 ? H2 ACY 204 A 1 HETATM 7 H H3 ACY . . . F 4 -1.86 -15.722 15.735 1 25.87 ? H3 ACY 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 7 #