data_9D8S # _model_server_result.job_id IoC6gOu0juUUACsJ9HvAfA _model_server_result.datetime_utc '2025-10-01 09:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d8s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":606}' # _entry.id 9D8S # _exptl.entry_id 9D8S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.64 _cell.angle_gamma 90 _cell.entry_id 9D8S _cell.length_a 59.746 _cell.length_b 55.746 _cell.length_c 81.954 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D8S _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 100 A SER 146 1_555 F MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc2 A OD1 ASN 157 A ASN 203 1_555 E MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc3 A OD2 ASP 173 A ASP 219 1_555 E MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A OD1 ASP 347 A ASP 393 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 A OD1 ASN 349 A ASN 395 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc6 A OD1 ASP 351 A ASP 397 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 A O MET 353 A MET 399 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc8 A OE1 GLU 358 A GLU 404 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc9 A OE2 GLU 358 A GLU 404 1_555 C CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc10 A OD1 ASP 397 A ASP 443 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 A OD1 ASP 399 A ASP 445 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc12 A OG SER 401 A SER 447 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc13 A O SER 403 A SER 449 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc14 A OE1 GLU 405 A GLU 451 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc15 A OE1 GLU 408 A GLU 454 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc16 A OE2 GLU 408 A GLU 454 1_555 D CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc17 B O2P AMP . A AMP 601 1_555 E MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc18 C CA CA . A CA 602 1_555 H O HOH . A HOH 748 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc19 E MG MG . A MG 604 1_555 H O HOH . A HOH 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc20 E MG MG . A MG 604 1_555 H O HOH . A HOH 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc21 F MG MG . A MG 605 1_555 H O HOH . A HOH 710 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag ? _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9D8S _atom_sites.fract_transf_matrix[1][1] 0.016738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004686 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 601 1 AMP AMP ? C 3 CA A 1 602 1 CA CA ? D 3 CA A 1 603 2 CA CA ? E 4 MG A 1 604 3 MG MG ? F 4 MG A 1 605 4 MG MG ? G 5 CL A 1 606 5 CL CL ? H 6 HOH A 1 701 2 HOH HOH ? H 6 HOH A 2 702 25 HOH HOH ? H 6 HOH A 3 703 46 HOH HOH ? H 6 HOH A 4 704 1 HOH HOH ? H 6 HOH A 5 705 37 HOH HOH ? H 6 HOH A 6 706 17 HOH HOH ? H 6 HOH A 7 707 26 HOH HOH ? H 6 HOH A 8 708 48 HOH HOH ? H 6 HOH A 9 709 43 HOH HOH ? H 6 HOH A 10 710 22 HOH HOH ? H 6 HOH A 11 711 21 HOH HOH ? H 6 HOH A 12 712 18 HOH HOH ? H 6 HOH A 13 713 36 HOH HOH ? H 6 HOH A 14 714 4 HOH HOH ? H 6 HOH A 15 715 19 HOH HOH ? H 6 HOH A 16 716 16 HOH HOH ? H 6 HOH A 17 717 56 HOH HOH ? H 6 HOH A 18 718 12 HOH HOH ? H 6 HOH A 19 719 33 HOH HOH ? H 6 HOH A 20 720 8 HOH HOH ? H 6 HOH A 21 721 45 HOH HOH ? H 6 HOH A 22 722 41 HOH HOH ? H 6 HOH A 23 723 13 HOH HOH ? H 6 HOH A 24 724 30 HOH HOH ? H 6 HOH A 25 725 5 HOH HOH ? H 6 HOH A 26 726 50 HOH HOH ? H 6 HOH A 27 727 10 HOH HOH ? H 6 HOH A 28 728 15 HOH HOH ? H 6 HOH A 29 729 53 HOH HOH ? H 6 HOH A 30 730 55 HOH HOH ? H 6 HOH A 31 731 28 HOH HOH ? H 6 HOH A 32 732 47 HOH HOH ? H 6 HOH A 33 733 42 HOH HOH ? H 6 HOH A 34 734 44 HOH HOH ? H 6 HOH A 35 735 54 HOH HOH ? H 6 HOH A 36 736 31 HOH HOH ? H 6 HOH A 37 737 34 HOH HOH ? H 6 HOH A 38 738 51 HOH HOH ? H 6 HOH A 39 739 49 HOH HOH ? H 6 HOH A 40 740 11 HOH HOH ? H 6 HOH A 41 741 32 HOH HOH ? H 6 HOH A 42 742 3 HOH HOH ? H 6 HOH A 43 743 23 HOH HOH ? H 6 HOH A 44 744 7 HOH HOH ? H 6 HOH A 45 745 35 HOH HOH ? H 6 HOH A 46 746 20 HOH HOH ? H 6 HOH A 47 747 52 HOH HOH ? H 6 HOH A 48 748 29 HOH HOH ? H 6 HOH A 49 749 27 HOH HOH ? H 6 HOH A 50 750 14 HOH HOH ? H 6 HOH A 51 751 6 HOH HOH ? H 6 HOH A 52 752 24 HOH HOH ? H 6 HOH A 53 753 40 HOH HOH ? H 6 HOH A 54 754 38 HOH HOH ? H 6 HOH A 55 755 57 HOH HOH ? H 6 HOH A 56 756 9 HOH HOH ? H 6 HOH A 57 757 39 HOH HOH ? # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x 24.407 _atom_site.Cartn_y 15.089 _atom_site.Cartn_z 7.6 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75.22 _atom_site.pdbx_formal_charge -1 _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 606 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 196 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #