data_9DA0 # _model_server_result.job_id 9jmvJ8uqyBfx8Rn9JHQpJw _model_server_result.datetime_utc '2025-02-22 21:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9da0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9DA0 # _exptl.entry_id 9DA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 600.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DA0 _cell.length_a 93.1 _cell.length_b 93.1 _cell.length_c 44.66 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H41 F N4 O7' _chem_comp.formula_weight 600.678 _chem_comp.id AG7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RUPINTRIVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AG7 sing 1 n n C01 O03 AG7 doub 2 n n C01 C57 AG7 sing 3 n n C02 C04 AG7 sing 4 n n C02 H2 AG7 sing 5 n n C02 H3 AG7 sing 6 n n C04 C05 AG7 sing 7 n n C04 C47 AG7 sing 8 n n C04 H27 AG7 sing 9 n n C05 C06 AG7 sing 10 n n C05 H28 AG7 sing 11 n n C05 H29 AG7 sing 12 n n C06 C07 AG7 doub 13 n y C06 C11 AG7 sing 14 n y C07 C08 AG7 sing 15 n y C07 H30 AG7 sing 16 n n C08 C09 AG7 doub 17 n y C08 H31 AG7 sing 18 n n C09 C10 AG7 sing 19 n y C09 F1 AG7 sing 20 n n C10 C11 AG7 doub 21 n y C10 H33 AG7 sing 22 n n C11 H34 AG7 sing 23 n n N12 C13 AG7 sing 24 n n N12 C47 AG7 sing 25 n n N12 H49 AG7 sing 26 n n C13 C14 AG7 sing 27 n n C13 C19 AG7 sing 28 n n C13 H91 AG7 sing 29 n n C14 C15 AG7 sing 30 n n C14 H35 AG7 sing 31 n n C14 H36 AG7 sing 32 n n C15 C16 AG7 sing 33 n n C15 C84 AG7 sing 34 n n C15 H94 AG7 sing 35 n n C16 N17 AG7 sing 36 n n C16 O18 AG7 doub 37 n n N17 C83 AG7 sing 38 n n N17 H39 AG7 sing 39 n n C19 C20 AG7 sing 40 n n C19 H191 AG7 sing 41 n n C19 H192 AG7 sing 42 n n C20 C21 AG7 sing 43 n n C20 H41 AG7 sing 44 n n C20 H42 AG7 sing 45 n n C21 O22 AG7 sing 46 n n C21 O23 AG7 doub 47 n n O22 C50 AG7 sing 48 n n C47 O48 AG7 doub 49 n n C50 C53 AG7 sing 50 n n C50 H51 AG7 sing 51 n n C50 H52 AG7 sing 52 n n C53 H53 AG7 sing 53 n n C53 H54 AG7 sing 54 n n C53 H56 AG7 sing 55 n n C57 N58 AG7 sing 56 n n C57 C78 AG7 sing 57 n n C57 H77 AG7 sing 58 n n N58 C59 AG7 sing 59 n n N58 H61 AG7 sing 60 n n C59 O60 AG7 doub 61 n n C59 C1 AG7 sing 62 n n C78 C81 AG7 sing 63 n n C78 C82 AG7 sing 64 n n C78 H79 AG7 sing 65 n n C81 H82 AG7 sing 66 n n C81 H84 AG7 sing 67 n n C81 H85 AG7 sing 68 n n C82 H86 AG7 sing 69 n n C82 H87 AG7 sing 70 n n C82 H88 AG7 sing 71 n n C83 C84 AG7 sing 72 n n C83 H89 AG7 sing 73 n n C83 H90 AG7 sing 74 n n C84 H92 AG7 sing 75 n n C84 H93 AG7 sing 76 n n C1 C2 AG7 sing 77 n y C1 N5 AG7 doub 78 n y C2 C3 AG7 doub 79 n y C2 H8 AG7 sing 80 n n C3 O4 AG7 sing 81 n y C3 C4 AG7 sing 82 n n O4 N5 AG7 sing 83 n y C4 H5 AG7 sing 84 n n C4 H6 AG7 sing 85 n n C4 H7 AG7 sing 86 n n # _atom_sites.entry_id 9DA0 _atom_sites.fract_transf_matrix[1][1] 0.010741 _atom_sites.fract_transf_matrix[1][2] 0.006201 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AG7 A 1 201 201 AG7 AG7 . C 3 HOH A 1 301 54 HOH HOH . C 3 HOH A 2 302 473 HOH HOH . C 3 HOH A 3 303 6 HOH HOH . C 3 HOH A 4 304 1 HOH HOH . C 3 HOH A 5 305 36 HOH HOH . C 3 HOH A 6 306 2 HOH HOH . C 3 HOH A 7 307 112 HOH HOH . C 3 HOH A 8 308 361 HOH HOH . C 3 HOH A 9 309 71 HOH HOH . C 3 HOH A 10 310 69 HOH HOH . C 3 HOH A 11 311 26 HOH HOH . C 3 HOH A 12 312 56 HOH HOH . C 3 HOH A 13 313 395 HOH HOH . C 3 HOH A 14 314 57 HOH HOH . C 3 HOH A 15 315 16 HOH HOH . C 3 HOH A 16 316 3 HOH HOH . C 3 HOH A 17 317 28 HOH HOH . C 3 HOH A 18 318 31 HOH HOH . C 3 HOH A 19 319 367 HOH HOH . C 3 HOH A 20 320 4 HOH HOH . C 3 HOH A 21 321 234 HOH HOH . C 3 HOH A 22 322 35 HOH HOH . C 3 HOH A 23 323 125 HOH HOH . C 3 HOH A 24 324 12 HOH HOH . C 3 HOH A 25 325 39 HOH HOH . C 3 HOH A 26 326 41 HOH HOH . C 3 HOH A 27 327 38 HOH HOH . C 3 HOH A 28 328 11 HOH HOH . C 3 HOH A 29 329 10 HOH HOH . C 3 HOH A 30 330 536 HOH HOH . C 3 HOH A 31 331 55 HOH HOH . C 3 HOH A 32 332 7 HOH HOH . C 3 HOH A 33 333 18 HOH HOH . C 3 HOH A 34 334 80 HOH HOH . C 3 HOH A 35 335 681 HOH HOH . C 3 HOH A 36 336 96 HOH HOH . C 3 HOH A 37 337 184 HOH HOH . C 3 HOH A 38 338 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AG7 . . . B 2 38.052 28.61 -9.038 1 39.14 ? C01 AG7 201 A 1 HETATM 2 C C02 AG7 . . . B 2 38.456 29.502 -7.892 1 39.63 ? C02 AG7 201 A 1 HETATM 3 O O03 AG7 . . . B 2 37.061 27.904 -9.026 1 35.75 ? O03 AG7 201 A 1 HETATM 4 C C04 AG7 . . . B 2 37.469 29.524 -6.76 1 40.29 ? C04 AG7 201 A 1 HETATM 5 C C05 AG7 . . . B 2 37.874 30.513 -5.658 1 40.96 ? C05 AG7 201 A 1 HETATM 6 C C06 AG7 . . . B 2 39.068 30.077 -4.87 1 38.93 ? C06 AG7 201 A 1 HETATM 7 C C07 AG7 . . . B 2 39.011 28.949 -4.055 1 37.15 ? C07 AG7 201 A 1 HETATM 8 C C08 AG7 . . . B 2 40.112 28.537 -3.327 1 38.45 ? C08 AG7 201 A 1 HETATM 9 C C09 AG7 . . . B 2 41.274 29.276 -3.423 1 37.34 ? C09 AG7 201 A 1 HETATM 10 C C10 AG7 . . . B 2 41.375 30.399 -4.216 1 40.58 ? C10 AG7 201 A 1 HETATM 11 C C11 AG7 . . . B 2 40.258 30.792 -4.938 1 41.06 ? C11 AG7 201 A 1 HETATM 12 N N12 AG7 . . . B 2 35.084 29.423 -6.763 1 38.86 ? N12 AG7 201 A 1 HETATM 13 C C13 AG7 . . . B 2 33.696 29.731 -7.055 1 46.12 ? C13 AG7 201 A 1 HETATM 14 C C14 AG7 . . . B 2 33.074 28.453 -7.597 1 43.06 ? C14 AG7 201 A 1 HETATM 15 C C15 AG7 . . . B 2 33.743 27.892 -8.881 1 42 ? C15 AG7 201 A 1 HETATM 16 C C16 AG7 . . . B 2 33.062 26.721 -9.583 1 44.2 ? C16 AG7 201 A 1 HETATM 17 N N17 AG7 . . . B 2 33.069 26.963 -10.907 1 42.54 ? N17 AG7 201 A 1 HETATM 18 O O18 AG7 . . . B 2 32.62 25.716 -9.05 1 47.4 ? O18 AG7 201 A 1 HETATM 19 C C19 AG7 . . . B 2 33.143 30.319 -5.75 1 45.35 ? C19 AG7 201 A 1 HETATM 20 C C20 AG7 . . . B 2 33.541 31.744 -5.363 1 48.77 ? C20 AG7 201 A 1 HETATM 21 C C21 AG7 . . . B 2 33.12 32.831 -6.308 1 46.26 ? C21 AG7 201 A 1 HETATM 22 O O22 AG7 . . . B 2 33.976 33.846 -6.229 1 63.04 ? O22 AG7 201 A 1 HETATM 23 O O23 AG7 . . . B 2 32.158 32.797 -7.032 1 51.61 ? O23 AG7 201 A 1 HETATM 24 C C47 AG7 . . . B 2 36.138 30.035 -7.269 1 42.16 ? C47 AG7 201 A 1 HETATM 25 O O48 AG7 . . . B 2 36.07 30.955 -8.066 1 44.91 ? O48 AG7 201 A 1 HETATM 26 C C50 AG7 . . . B 2 33.666 34.957 -5.364 1 71.76 ? C50 AG7 201 A 1 HETATM 27 C C53 AG7 . . . B 2 34.003 34.605 -3.925 1 53.08 ? C53 AG7 201 A 1 HETATM 28 C C57 AG7 . . . B 2 39.024 28.621 -10.236 1 42.22 ? C57 AG7 201 A 1 HETATM 29 N N58 AG7 . . . B 2 39.483 27.246 -10.186 1 40.23 ? N58 AG7 201 A 1 HETATM 30 C C59 AG7 . . . B 2 40.753 26.93 -9.899 1 36.63 ? C59 AG7 201 A 1 HETATM 31 O O60 AG7 . . . B 2 41.625 27.748 -9.674 1 36.17 ? O60 AG7 201 A 1 HETATM 32 C C78 AG7 . . . B 2 38.457 29.146 -11.538 1 52.35 ? C78 AG7 201 A 1 HETATM 33 C C81 AG7 . . . B 2 37.776 28.078 -12.362 1 57.21 ? C81 AG7 201 A 1 HETATM 34 F F1 AG7 . . . B 2 42.341 28.878 -2.717 1 42.47 ? F1 AG7 201 A 1 HETATM 35 C C82 AG7 . . . B 2 37.482 30.31 -11.264 1 44.98 ? C82 AG7 201 A 1 HETATM 36 C C83 AG7 . . . B 2 33.663 28.219 -11.304 1 43.63 ? C83 AG7 201 A 1 HETATM 37 C C84 AG7 . . . B 2 33.712 28.982 -9.976 1 40.36 ? C84 AG7 201 A 1 HETATM 38 C C1 AG7 . . . B 2 41.098 25.489 -9.84 1 44.04 ? C1 AG7 201 A 1 HETATM 39 C C2 AG7 . . . B 2 42.408 24.985 -9.729 1 49.39 ? C2 AG7 201 A 1 HETATM 40 C C3 AG7 . . . B 2 42.23 23.646 -9.682 1 51.55 ? C3 AG7 201 A 1 HETATM 41 O O4 AG7 . . . B 2 40.911 23.384 -9.743 1 47.89 ? O4 AG7 201 A 1 HETATM 42 N N5 AG7 . . . B 2 40.209 24.536 -9.831 1 46.57 ? N5 AG7 201 A 1 HETATM 43 C C4 AG7 . . . B 2 43.184 22.515 -9.575 1 47.45 ? C4 AG7 201 A 1 HETATM 44 H H2 AG7 . . . B 2 39.324 29.221 -7.562 1 47.55 ? H2 AG7 201 A 1 HETATM 45 H H3 AG7 . . . B 2 38.591 30.403 -8.224 1 47.55 ? H3 AG7 201 A 1 HETATM 46 H H27 AG7 . . . B 2 37.433 28.617 -6.418 1 48.35 ? H27 AG7 201 A 1 HETATM 47 H H28 AG7 . . . B 2 37.12 30.641 -5.062 1 49.15 ? H28 AG7 201 A 1 HETATM 48 H H29 AG7 . . . B 2 38.051 31.377 -6.064 1 49.15 ? H29 AG7 201 A 1 HETATM 49 H H30 AG7 . . . B 2 38.225 28.456 -3.989 1 44.58 ? H30 AG7 201 A 1 HETATM 50 H H31 AG7 . . . B 2 40.074 27.782 -2.786 1 46.13 ? H31 AG7 201 A 1 HETATM 51 H H33 AG7 . . . B 2 42.17 30.88 -4.264 1 48.69 ? H33 AG7 201 A 1 HETATM 52 H H34 AG7 . . . B 2 40.311 31.549 -5.477 1 49.27 ? H34 AG7 201 A 1 HETATM 53 H H49 AG7 . . . B 2 35.225 28.781 -6.208 1 46.63 ? H49 AG7 201 A 1 HETATM 54 H H91 AG7 . . . B 2 33.527 30.387 -7.75 1 55.34 ? H91 AG7 201 A 1 HETATM 55 H H35 AG7 . . . B 2 32.133 28.617 -7.764 1 51.67 ? H35 AG7 201 A 1 HETATM 56 H H36 AG7 . . . B 2 33.096 27.781 -6.898 1 51.67 ? H36 AG7 201 A 1 HETATM 57 H H94 AG7 . . . B 2 34.628 27.581 -8.636 1 50.4 ? H94 AG7 201 A 1 HETATM 58 H H39 AG7 . . . B 2 32.742 26.405 -11.475 1 51.05 ? H39 AG7 201 A 1 HETATM 59 H H191 AG7 . . . B 2 32.176 30.272 -5.804 1 54.42 ? H191 AG7 201 A 1 HETATM 60 H H192 AG7 . . . B 2 33.408 29.72 -5.034 1 54.42 ? H192 AG7 201 A 1 HETATM 61 H H41 AG7 . . . B 2 33.177 31.977 -4.494 1 58.52 ? H41 AG7 201 A 1 HETATM 62 H H42 AG7 . . . B 2 34.503 31.817 -5.269 1 58.52 ? H42 AG7 201 A 1 HETATM 63 H H51 AG7 . . . B 2 32.724 35.171 -5.449 1 86.11 ? H51 AG7 201 A 1 HETATM 64 H H52 AG7 . . . B 2 34.174 35.733 -5.651 1 86.11 ? H52 AG7 201 A 1 HETATM 65 H H53 AG7 . . . B 2 34.663 35.211 -3.554 1 63.69 ? H53 AG7 201 A 1 HETATM 66 H H54 AG7 . . . B 2 34.364 33.707 -3.853 1 63.69 ? H54 AG7 201 A 1 HETATM 67 H H56 AG7 . . . B 2 33.22 34.647 -3.355 1 63.69 ? H56 AG7 201 A 1 HETATM 68 H H77 AG7 . . . B 2 39.804 29.179 -10.092 1 50.67 ? H77 AG7 201 A 1 HETATM 69 H H61 AG7 . . . B 2 38.918 26.617 -10.346 1 48.27 ? H61 AG7 201 A 1 HETATM 70 H H79 AG7 . . . B 2 39.212 29.454 -12.063 1 62.83 ? H79 AG7 201 A 1 HETATM 71 H H82 AG7 . . . B 2 37.026 27.698 -11.879 1 68.65 ? H82 AG7 201 A 1 HETATM 72 H H84 AG7 . . . B 2 38.396 27.361 -12.573 1 68.65 ? H84 AG7 201 A 1 HETATM 73 H H85 AG7 . . . B 2 37.445 28.448 -13.196 1 68.65 ? H85 AG7 201 A 1 HETATM 74 H H86 AG7 . . . B 2 37.248 30.793 -12.072 1 53.98 ? H86 AG7 201 A 1 HETATM 75 H H87 AG7 . . . B 2 37.851 30.964 -10.65 1 53.98 ? H87 AG7 201 A 1 HETATM 76 H H88 AG7 . . . B 2 36.646 30.008 -10.874 1 53.98 ? H88 AG7 201 A 1 HETATM 77 H H89 AG7 . . . B 2 33.117 28.667 -11.97 1 52.36 ? H89 AG7 201 A 1 HETATM 78 H H90 AG7 . . . B 2 34.544 28.083 -11.687 1 52.36 ? H90 AG7 201 A 1 HETATM 79 H H92 AG7 . . . B 2 32.934 29.554 -9.881 1 48.44 ? H92 AG7 201 A 1 HETATM 80 H H93 AG7 . . . B 2 34.501 29.545 -9.934 1 48.44 ? H93 AG7 201 A 1 HETATM 81 H H8 AG7 . . . B 2 43.209 25.457 -9.695 1 59.26 ? H8 AG7 201 A 1 HETATM 82 H H5 AG7 . . . B 2 43.038 22.008 -8.761 1 56.94 ? H5 AG7 201 A 1 HETATM 83 H H6 AG7 . . . B 2 44.101 22.83 -9.566 1 56.94 ? H6 AG7 201 A 1 HETATM 84 H H7 AG7 . . . B 2 43.089 21.904 -10.323 1 56.94 ? H7 AG7 201 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #