data_9DA3
#
_model_server_result.job_id            Tghf647PiiuWatnZ3tg7ZQ 
_model_server_result.datetime_utc      '2025-03-10 20:16:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9da3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    9DA3 
#
_exptl.entry_id    9DA3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              334.262 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)-6-oxo-1,6-dihydropyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DA3 
_cell.length_a            60.972 
_cell.length_b            64.585 
_cell.length_c            128.64 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DA3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H19 N2 O7 P' 
_chem_comp.formula_weight    334.262 
_chem_comp.id                A1BBD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)-6-oxo-1,6-dihydropyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C04 C02 A1BBD sing 1 n n 
C04 N01 A1BBD sing 2 n n 
O01 C01 A1BBD sing 3 n n 
C02 C01 A1BBD sing 4 n n 
C02 C03 A1BBD sing 5 n n 
N01 C05 A1BBD sing 6 n n 
N01 C12 A1BBD sing 7 n n 
C05 C06 A1BBD sing 8 n n 
O03 P01 A1BBD doub 9 n n 
O02 C03 A1BBD sing 10 n n 
O02 P01 A1BBD sing 11 n n 
C01 C12 A1BBD sing 12 n n 
P01 O04 A1BBD sing 13 n n 
P01 O05 A1BBD sing 14 n n 
C06 C11 A1BBD sing 15 n n 
C06 C07 A1BBD doub 16 n n 
C11 C09 A1BBD doub 17 n n 
O07 C10 A1BBD sing 18 n n 
C07 N02 A1BBD sing 19 n n 
C09 C10 A1BBD sing 20 n n 
C09 C08 A1BBD sing 21 n n 
N02 C08 A1BBD sing 22 n n 
C08 O06 A1BBD doub 23 n n 
C12 H1 A1BBD sing 24 n n 
C12 H2 A1BBD sing 25 n n 
C11 H3 A1BBD sing 26 n n 
C10 H4 A1BBD sing 27 n n 
C10 H5 A1BBD sing 28 n n 
C01 H6 A1BBD sing 29 n n 
C02 H7 A1BBD sing 30 n n 
C03 H8 A1BBD sing 31 n n 
C03 H9 A1BBD sing 32 n n 
C04 H10 A1BBD sing 33 n n 
C04 H11 A1BBD sing 34 n n 
C05 H12 A1BBD sing 35 n n 
C05 H13 A1BBD sing 36 n n 
C07 H15 A1BBD sing 37 n n 
O01 H17 A1BBD sing 38 n n 
O04 H18 A1BBD sing 39 n n 
O05 H19 A1BBD sing 40 n n 
O07 H20 A1BBD sing 41 n n 
N02 H14 A1BBD sing 42 n n 
#
_atom_sites.entry_id                     9DA3 
_atom_sites.fract_transf_matrix[1][1]    0.016401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1BBD A 1 201 203 A1BBD T40 . 
D 2 A1BBD B 1 201 201 A1BBD T40 . 
E 3 HOH A 1 301 134 HOH HOH . 
E 3 HOH A 2 302 51 HOH HOH . 
E 3 HOH A 3 303 153 HOH HOH . 
E 3 HOH A 4 304 103 HOH HOH . 
E 3 HOH A 5 305 57 HOH HOH . 
E 3 HOH A 6 306 108 HOH HOH . 
E 3 HOH A 7 307 96 HOH HOH . 
E 3 HOH A 8 308 33 HOH HOH . 
E 3 HOH A 9 309 24 HOH HOH . 
E 3 HOH A 10 310 25 HOH HOH . 
E 3 HOH A 11 311 157 HOH HOH . 
E 3 HOH A 12 312 41 HOH HOH . 
E 3 HOH A 13 313 52 HOH HOH . 
E 3 HOH A 14 314 152 HOH HOH . 
E 3 HOH A 15 315 21 HOH HOH . 
E 3 HOH A 16 316 81 HOH HOH . 
E 3 HOH A 17 317 2 HOH HOH . 
E 3 HOH A 18 318 165 HOH HOH . 
E 3 HOH A 19 319 13 HOH HOH . 
E 3 HOH A 20 320 31 HOH HOH . 
E 3 HOH A 21 321 112 HOH HOH . 
E 3 HOH A 22 322 84 HOH HOH . 
E 3 HOH A 23 323 162 HOH HOH . 
E 3 HOH A 24 324 150 HOH HOH . 
E 3 HOH A 25 325 16 HOH HOH . 
E 3 HOH A 26 326 10 HOH HOH . 
E 3 HOH A 27 327 63 HOH HOH . 
E 3 HOH A 28 328 60 HOH HOH . 
E 3 HOH A 29 329 22 HOH HOH . 
E 3 HOH A 30 330 163 HOH HOH . 
E 3 HOH A 31 331 101 HOH HOH . 
E 3 HOH A 32 332 7 HOH HOH . 
E 3 HOH A 33 333 128 HOH HOH . 
E 3 HOH A 34 334 54 HOH HOH . 
E 3 HOH A 35 335 4 HOH HOH . 
E 3 HOH A 36 336 15 HOH HOH . 
E 3 HOH A 37 337 32 HOH HOH . 
E 3 HOH A 38 338 100 HOH HOH . 
E 3 HOH A 39 339 19 HOH HOH . 
E 3 HOH A 40 340 166 HOH HOH . 
E 3 HOH A 41 341 135 HOH HOH . 
E 3 HOH A 42 342 56 HOH HOH . 
E 3 HOH A 43 343 9 HOH HOH . 
E 3 HOH A 44 344 27 HOH HOH . 
E 3 HOH A 45 345 26 HOH HOH . 
E 3 HOH A 46 346 89 HOH HOH . 
E 3 HOH A 47 347 104 HOH HOH . 
E 3 HOH A 48 348 74 HOH HOH . 
E 3 HOH A 49 349 97 HOH HOH . 
E 3 HOH A 50 350 88 HOH HOH . 
E 3 HOH A 51 351 85 HOH HOH . 
E 3 HOH A 52 352 121 HOH HOH . 
E 3 HOH A 53 353 40 HOH HOH . 
E 3 HOH A 54 354 45 HOH HOH . 
E 3 HOH A 55 355 37 HOH HOH . 
E 3 HOH A 56 356 91 HOH HOH . 
E 3 HOH A 57 357 130 HOH HOH . 
E 3 HOH A 58 358 1 HOH HOH . 
E 3 HOH A 59 359 95 HOH HOH . 
E 3 HOH A 60 360 30 HOH HOH . 
E 3 HOH A 61 361 71 HOH HOH . 
E 3 HOH A 62 362 145 HOH HOH . 
E 3 HOH A 63 363 39 HOH HOH . 
E 3 HOH A 64 364 161 HOH HOH . 
E 3 HOH A 65 365 65 HOH HOH . 
E 3 HOH A 66 366 29 HOH HOH . 
E 3 HOH A 67 367 118 HOH HOH . 
E 3 HOH A 68 368 53 HOH HOH . 
E 3 HOH A 69 369 58 HOH HOH . 
E 3 HOH A 70 370 11 HOH HOH . 
E 3 HOH A 71 371 35 HOH HOH . 
E 3 HOH A 72 372 105 HOH HOH . 
E 3 HOH A 73 373 43 HOH HOH . 
E 3 HOH A 74 374 124 HOH HOH . 
E 3 HOH A 75 375 106 HOH HOH . 
E 3 HOH A 76 376 113 HOH HOH . 
E 3 HOH A 77 377 138 HOH HOH . 
E 3 HOH A 78 378 42 HOH HOH . 
E 3 HOH A 79 379 155 HOH HOH . 
E 3 HOH A 80 380 110 HOH HOH . 
E 3 HOH A 81 381 154 HOH HOH . 
E 3 HOH A 82 382 80 HOH HOH . 
E 3 HOH A 83 383 132 HOH HOH . 
E 3 HOH A 84 384 83 HOH HOH . 
E 3 HOH A 85 385 125 HOH HOH . 
E 3 HOH A 86 386 59 HOH HOH . 
E 3 HOH A 87 387 123 HOH HOH . 
F 3 HOH B 1 301 131 HOH HOH . 
F 3 HOH B 2 302 78 HOH HOH . 
F 3 HOH B 3 303 79 HOH HOH . 
F 3 HOH B 4 304 61 HOH HOH . 
F 3 HOH B 5 305 139 HOH HOH . 
F 3 HOH B 6 306 50 HOH HOH . 
F 3 HOH B 7 307 72 HOH HOH . 
F 3 HOH B 8 308 147 HOH HOH . 
F 3 HOH B 9 309 151 HOH HOH . 
F 3 HOH B 10 310 158 HOH HOH . 
F 3 HOH B 11 311 23 HOH HOH . 
F 3 HOH B 12 312 48 HOH HOH . 
F 3 HOH B 13 313 44 HOH HOH . 
F 3 HOH B 14 314 115 HOH HOH . 
F 3 HOH B 15 315 69 HOH HOH . 
F 3 HOH B 16 316 107 HOH HOH . 
F 3 HOH B 17 317 86 HOH HOH . 
F 3 HOH B 18 318 14 HOH HOH . 
F 3 HOH B 19 319 70 HOH HOH . 
F 3 HOH B 20 320 34 HOH HOH . 
F 3 HOH B 21 321 129 HOH HOH . 
F 3 HOH B 22 322 137 HOH HOH . 
F 3 HOH B 23 323 12 HOH HOH . 
F 3 HOH B 24 324 156 HOH HOH . 
F 3 HOH B 25 325 49 HOH HOH . 
F 3 HOH B 26 326 6 HOH HOH . 
F 3 HOH B 27 327 76 HOH HOH . 
F 3 HOH B 28 328 3 HOH HOH . 
F 3 HOH B 29 329 46 HOH HOH . 
F 3 HOH B 30 330 67 HOH HOH . 
F 3 HOH B 31 331 8 HOH HOH . 
F 3 HOH B 32 332 143 HOH HOH . 
F 3 HOH B 33 333 144 HOH HOH . 
F 3 HOH B 34 334 93 HOH HOH . 
F 3 HOH B 35 335 120 HOH HOH . 
F 3 HOH B 36 336 117 HOH HOH . 
F 3 HOH B 37 337 159 HOH HOH . 
F 3 HOH B 38 338 92 HOH HOH . 
F 3 HOH B 39 339 77 HOH HOH . 
F 3 HOH B 40 340 17 HOH HOH . 
F 3 HOH B 41 341 18 HOH HOH . 
F 3 HOH B 42 342 75 HOH HOH . 
F 3 HOH B 43 343 90 HOH HOH . 
F 3 HOH B 44 344 68 HOH HOH . 
F 3 HOH B 45 345 38 HOH HOH . 
F 3 HOH B 46 346 47 HOH HOH . 
F 3 HOH B 47 347 73 HOH HOH . 
F 3 HOH B 48 348 20 HOH HOH . 
F 3 HOH B 49 349 136 HOH HOH . 
F 3 HOH B 50 350 114 HOH HOH . 
F 3 HOH B 51 351 102 HOH HOH . 
F 3 HOH B 52 352 28 HOH HOH . 
F 3 HOH B 53 353 5 HOH HOH . 
F 3 HOH B 54 354 66 HOH HOH . 
F 3 HOH B 55 355 87 HOH HOH . 
F 3 HOH B 56 356 98 HOH HOH . 
F 3 HOH B 57 357 64 HOH HOH . 
F 3 HOH B 58 358 133 HOH HOH . 
F 3 HOH B 59 359 160 HOH HOH . 
F 3 HOH B 60 360 164 HOH HOH . 
F 3 HOH B 61 361 149 HOH HOH . 
F 3 HOH B 62 362 36 HOH HOH . 
F 3 HOH B 63 363 55 HOH HOH . 
F 3 HOH B 64 364 116 HOH HOH . 
F 3 HOH B 65 365 127 HOH HOH . 
F 3 HOH B 66 366 119 HOH HOH . 
F 3 HOH B 67 367 62 HOH HOH . 
F 3 HOH B 68 368 122 HOH HOH . 
F 3 HOH B 69 369 140 HOH HOH . 
F 3 HOH B 70 370 82 HOH HOH . 
F 3 HOH B 71 371 141 HOH HOH . 
F 3 HOH B 72 372 142 HOH HOH . 
F 3 HOH B 73 373 146 HOH HOH . 
F 3 HOH B 74 374 148 HOH HOH . 
F 3 HOH B 75 375 109 HOH HOH . 
F 3 HOH B 76 376 126 HOH HOH . 
F 3 HOH B 77 377 94 HOH HOH . 
F 3 HOH B 78 378 111 HOH HOH . 
F 3 HOH B 79 379 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 A1BBD . . . C 2 -25.682 -12.784 -8.835 1 15.06 ? C12 A1BBD 201 A 1 
HETATM 2 C C11 A1BBD . . . C 2 -27.292 -15.902 -7.642 1 14.95 ? C11 A1BBD 201 A 1 
HETATM 3 C C10 A1BBD . . . C 2 -26.869 -17.753 -5.909 1 16.16 ? C10 A1BBD 201 A 1 
HETATM 4 C C01 A1BBD . . . C 2 -24.18 -12.896 -9.155 1 13.54 ? C01 A1BBD 201 A 1 
HETATM 5 C C02 A1BBD . . . C 2 -24.056 -14.356 -9.758 1 13.35 ? C02 A1BBD 201 A 1 
HETATM 6 C C03 A1BBD . . . C 2 -23.431 -15.323 -8.65 1 13.41 ? C03 A1BBD 201 A 1 
HETATM 7 C C04 A1BBD . . . C 2 -25.277 -14.795 -10.092 1 12.89 ? C04 A1BBD 201 A 1 
HETATM 8 C C05 A1BBD . . . C 2 -27.671 -14.038 -9.36 1 15.11 ? C05 A1BBD 201 A 1 
HETATM 9 C C06 A1BBD . . . C 2 -27.735 -14.594 -7.909 1 16.08 ? C06 A1BBD 201 A 1 
HETATM 10 C C07 A1BBD . . . C 2 -28.25 -13.802 -6.882 1 16.91 ? C07 A1BBD 201 A 1 
HETATM 11 C C08 A1BBD . . . C 2 -27.866 -15.486 -5.377 1 16.77 ? C08 A1BBD 201 A 1 
HETATM 12 C C09 A1BBD . . . C 2 -27.351 -16.348 -6.333 1 14.62 ? C09 A1BBD 201 A 1 
HETATM 13 N N01 A1BBD . . . C 2 -26.304 -13.578 -9.737 1 14.33 ? N01 A1BBD 201 A 1 
HETATM 14 N N02 A1BBD . . . C 2 -28.298 -14.259 -5.635 1 18.67 ? N02 A1BBD 201 A 1 
HETATM 15 O O01 A1BBD . . . C 2 -23.733 -11.972 -10.046 1 13.72 ? O01 A1BBD 201 A 1 
HETATM 16 O O02 A1BBD . . . C 2 -23.432 -16.614 -9.233 1 13.04 ? O02 A1BBD 201 A 1 
HETATM 17 O O03 A1BBD . . . C 2 -22.959 -19.037 -9.275 1 13.08 ? O03 A1BBD 201 A 1 
HETATM 18 O O04 A1BBD . . . C 2 -21.483 -17.555 -7.896 1 13.2 ? O04 A1BBD 201 A 1 
HETATM 19 O O05 A1BBD . . . C 2 -23.825 -17.94 -7.139 1 12.47 ? O05 A1BBD 201 A 1 
HETATM 20 O O06 A1BBD . . . C 2 -27.934 -15.921 -4.051 1 20.29 ? O06 A1BBD 201 A 1 
HETATM 21 O O07 A1BBD . . . C 2 -26.317 -18.455 -7.007 1 14.94 ? O07 A1BBD 201 A 1 
HETATM 22 P P01 A1BBD . . . C 2 -22.904 -17.864 -8.336 1 12.52 ? P01 A1BBD 201 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           22 
#