data_9DA5
#
_model_server_result.job_id            TtdN0I2xO59EOTVuXLXDag 
_model_server_result.datetime_utc      '2025-03-10 20:15:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9da5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    9DA5 
#
_exptl.entry_id    9DA5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              318.263 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)pyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DA5 
_cell.length_a            60.639 
_cell.length_b            64.999 
_cell.length_c            128.977 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DA5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H19 N2 O6 P' 
_chem_comp.formula_weight    318.263 
_chem_comp.id                A1BBF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(3R,4R)-4-hydroxy-1-{[5-(hydroxymethyl)pyridin-3-yl]methyl}pyrrolidin-3-yl]methyl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 A1BBF sing 1 n n 
C04 C02 A1BBF sing 2 n n 
C04 N01 A1BBF sing 3 n n 
C02 C01 A1BBF sing 4 n n 
C02 C03 A1BBF sing 5 n n 
O02 C03 A1BBF sing 6 n n 
O02 P01 A1BBF sing 7 n n 
C01 C12 A1BBF sing 8 n n 
C05 N01 A1BBF sing 9 n n 
C05 C06 A1BBF sing 10 n n 
O05 P01 A1BBF doub 11 n n 
N01 C12 A1BBF sing 12 n n 
P01 O03 A1BBF sing 13 n n 
P01 O04 A1BBF sing 14 n n 
C06 C07 A1BBF doub 15 n y 
C06 C11 A1BBF sing 16 n y 
C07 C08 A1BBF sing 17 n y 
O06 C09 A1BBF sing 18 n n 
C11 N02 A1BBF doub 19 n y 
C08 C09 A1BBF sing 20 n n 
C08 C10 A1BBF doub 21 n y 
N02 C10 A1BBF sing 22 n y 
C11 H1 A1BBF sing 23 n n 
C10 H2 A1BBF sing 24 n n 
C01 H3 A1BBF sing 25 n n 
C02 H4 A1BBF sing 26 n n 
C03 H5 A1BBF sing 27 n n 
C03 H6 A1BBF sing 28 n n 
C04 H7 A1BBF sing 29 n n 
C04 H8 A1BBF sing 30 n n 
C05 H9 A1BBF sing 31 n n 
C05 H10 A1BBF sing 32 n n 
C07 H11 A1BBF sing 33 n n 
C09 H12 A1BBF sing 34 n n 
C09 H13 A1BBF sing 35 n n 
C12 H14 A1BBF sing 36 n n 
C12 H15 A1BBF sing 37 n n 
O01 H17 A1BBF sing 38 n n 
O03 H18 A1BBF sing 39 n n 
O04 H19 A1BBF sing 40 n n 
O06 H20 A1BBF sing 41 n n 
#
_atom_sites.entry_id                     9DA5 
_atom_sites.fract_transf_matrix[1][1]    0.016491 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1BBF A 1 201 201 A1BBF T22 . 
D 2 A1BBF B 1 201 201 A1BBF T22 . 
E 3 HOH A 1 301 1 HOH HOH . 
E 3 HOH A 2 302 2 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
F 3 HOH B 1 301 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1BBF . . . C 2 -27.843 -14.153 -6.423 1 44.2 ? C11 A1BBF 201 A 1 
HETATM 2 C C10 A1BBF . . . C 2 -27.71 -15.993 -5 1 44.2 ? C10 A1BBF 201 A 1 
HETATM 3 C C01 A1BBF . . . C 2 -23.972 -13.229 -8.892 1 44.2 ? C01 A1BBF 201 A 1 
HETATM 4 C C02 A1BBF . . . C 2 -23.885 -14.499 -9.489 1 44.2 ? C02 A1BBF 201 A 1 
HETATM 5 C C03 A1BBF . . . C 2 -23.045 -15.488 -8.571 1 44.2 ? C03 A1BBF 201 A 1 
HETATM 6 C C04 A1BBF . . . C 2 -25.267 -15.084 -9.595 1 44.2 ? C04 A1BBF 201 A 1 
HETATM 7 C C05 A1BBF . . . C 2 -27.258 -14.321 -8.87 1 44.2 ? C05 A1BBF 201 A 1 
HETATM 8 C C06 A1BBF . . . C 2 -27.446 -14.956 -7.488 1 44.2 ? C06 A1BBF 201 A 1 
HETATM 9 C C07 A1BBF . . . C 2 -27.169 -16.279 -7.282 1 44.2 ? C07 A1BBF 201 A 1 
HETATM 10 C C08 A1BBF . . . C 2 -27.297 -16.808 -6.041 1 44.2 ? C08 A1BBF 201 A 1 
HETATM 11 C C09 A1BBF . . . C 2 -26.991 -18.286 -5.775 1 44.2 ? C09 A1BBF 201 A 1 
HETATM 12 C C12 A1BBF . . . C 2 -25.443 -12.89 -8.719 1 44.2 ? C12 A1BBF 201 A 1 
HETATM 13 N N01 A1BBF . . . C 2 -26.081 -14.2 -8.819 1 44.2 ? N01 A1BBF 201 A 1 
HETATM 14 N N02 A1BBF . . . C 2 -27.979 -14.68 -5.181 1 44.2 ? N02 A1BBF 201 A 1 
HETATM 15 O O01 A1BBF . . . C 2 -23.348 -12.273 -9.805 1 44.2 ? O01 A1BBF 201 A 1 
HETATM 16 O O02 A1BBF . . . C 2 -23.216 -16.784 -9.05 1 44.2 ? O02 A1BBF 201 A 1 
HETATM 17 O O03 A1BBF . . . C 2 -21.254 -17.738 -7.65 1 44.2 ? O03 A1BBF 201 A 1 
HETATM 18 O O04 A1BBF . . . C 2 -23.365 -18.232 -6.878 1 44.2 ? O04 A1BBF 201 A 1 
HETATM 19 O O05 A1BBF . . . C 2 -22.524 -19.278 -8.822 1 44.2 ? O05 A1BBF 201 A 1 
HETATM 20 O O06 A1BBF . . . C 2 -25.892 -18.731 -6.527 1 44.2 ? O06 A1BBF 201 A 1 
HETATM 21 P P01 A1BBF . . . C 2 -22.614 -18.002 -8.114 1 44.2 ? P01 A1BBF 201 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#