data_9DA7 # _model_server_result.job_id onP5hXopeac_dTSLSY1F6w _model_server_result.datetime_utc '2025-02-22 21:59:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9da7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9DA7 # _exptl.entry_id 9DA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 600.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DA7 _cell.length_a 56.569 _cell.length_b 56.569 _cell.length_c 95.064 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 139 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 139 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id AG7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AG7 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H41 F N4 O7' _chem_comp.formula_weight 600.678 _chem_comp.id AG7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RUPINTRIVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AG7 sing 1 n n C01 O03 AG7 doub 2 n n C01 C57 AG7 sing 3 n n C02 C04 AG7 sing 4 n n C02 H2 AG7 sing 5 n n C02 H3 AG7 sing 6 n n C04 C05 AG7 sing 7 n n C04 C47 AG7 sing 8 n n C04 H27 AG7 sing 9 n n C05 C06 AG7 sing 10 n n C05 H28 AG7 sing 11 n n C05 H29 AG7 sing 12 n n C06 C07 AG7 doub 13 n y C06 C11 AG7 sing 14 n y C07 C08 AG7 sing 15 n y C07 H30 AG7 sing 16 n n C08 C09 AG7 doub 17 n y C08 H31 AG7 sing 18 n n C09 C10 AG7 sing 19 n y C09 F1 AG7 sing 20 n n C10 C11 AG7 doub 21 n y C10 H33 AG7 sing 22 n n C11 H34 AG7 sing 23 n n N12 C13 AG7 sing 24 n n N12 C47 AG7 sing 25 n n N12 H49 AG7 sing 26 n n C13 C14 AG7 sing 27 n n C13 C19 AG7 sing 28 n n C13 H91 AG7 sing 29 n n C14 C15 AG7 sing 30 n n C14 H35 AG7 sing 31 n n C14 H36 AG7 sing 32 n n C15 C16 AG7 sing 33 n n C15 C84 AG7 sing 34 n n C15 H94 AG7 sing 35 n n C16 N17 AG7 sing 36 n n C16 O18 AG7 doub 37 n n N17 C83 AG7 sing 38 n n N17 H39 AG7 sing 39 n n C19 C20 AG7 sing 40 n n C19 H191 AG7 sing 41 n n C19 H192 AG7 sing 42 n n C20 C21 AG7 sing 43 n n C20 H41 AG7 sing 44 n n C20 H42 AG7 sing 45 n n C21 O22 AG7 sing 46 n n C21 O23 AG7 doub 47 n n O22 C50 AG7 sing 48 n n C47 O48 AG7 doub 49 n n C50 C53 AG7 sing 50 n n C50 H51 AG7 sing 51 n n C50 H52 AG7 sing 52 n n C53 H53 AG7 sing 53 n n C53 H54 AG7 sing 54 n n C53 H56 AG7 sing 55 n n C57 N58 AG7 sing 56 n n C57 C78 AG7 sing 57 n n C57 H77 AG7 sing 58 n n N58 C59 AG7 sing 59 n n N58 H61 AG7 sing 60 n n C59 O60 AG7 doub 61 n n C59 C1 AG7 sing 62 n n C78 C81 AG7 sing 63 n n C78 C82 AG7 sing 64 n n C78 H79 AG7 sing 65 n n C81 H82 AG7 sing 66 n n C81 H84 AG7 sing 67 n n C81 H85 AG7 sing 68 n n C82 H86 AG7 sing 69 n n C82 H87 AG7 sing 70 n n C82 H88 AG7 sing 71 n n C83 C84 AG7 sing 72 n n C83 H89 AG7 sing 73 n n C83 H90 AG7 sing 74 n n C84 H92 AG7 sing 75 n n C84 H93 AG7 sing 76 n n C1 C2 AG7 sing 77 n y C1 N5 AG7 doub 78 n y C2 C3 AG7 doub 79 n y C2 H8 AG7 sing 80 n n C3 O4 AG7 sing 81 n y C3 C4 AG7 sing 82 n n O4 N5 AG7 sing 83 n y C4 H5 AG7 sing 84 n n C4 H6 AG7 sing 85 n n C4 H7 AG7 sing 86 n n # _atom_sites.entry_id 9DA7 _atom_sites.fract_transf_matrix[1][1] 0.017678 _atom_sites.fract_transf_matrix[1][2] 0.010206 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AG7 A 1 201 201 AG7 AG7 . C 3 HOH A 1 301 111 HOH HOH . C 3 HOH A 2 302 71 HOH HOH . C 3 HOH A 3 303 126 HOH HOH . C 3 HOH A 4 304 19 HOH HOH . C 3 HOH A 5 305 161 HOH HOH . C 3 HOH A 6 306 8 HOH HOH . C 3 HOH A 7 307 5 HOH HOH . C 3 HOH A 8 308 166 HOH HOH . C 3 HOH A 9 309 4 HOH HOH . C 3 HOH A 10 310 123 HOH HOH . C 3 HOH A 11 311 17 HOH HOH . C 3 HOH A 12 312 1 HOH HOH . C 3 HOH A 13 313 128 HOH HOH . C 3 HOH A 14 314 150 HOH HOH . C 3 HOH A 15 315 139 HOH HOH . C 3 HOH A 16 316 74 HOH HOH . C 3 HOH A 17 317 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AG7 . . . B 2 -5.85 -3.308 -20.877 1 54.95 ? C01 AG7 201 A 1 HETATM 2 C C02 AG7 . . . B 2 -4.431 -2.988 -20.486 1 55.31 ? C02 AG7 201 A 1 HETATM 3 O O03 AG7 . . . B 2 -6.405 -4.257 -20.372 1 54.7 ? O03 AG7 201 A 1 HETATM 4 C C04 AG7 . . . B 2 -3.978 -3.697 -19.217 1 54.18 ? C04 AG7 201 A 1 HETATM 5 C C05 AG7 . . . B 2 -2.584 -3.129 -18.847 1 53.56 ? C05 AG7 201 A 1 HETATM 6 C C06 AG7 . . . B 2 -1.9 -3.679 -17.617 1 53.54 ? C06 AG7 201 A 1 HETATM 7 C C07 AG7 . . . B 2 -1.599 -5.035 -17.569 1 53.28 ? C07 AG7 201 A 1 HETATM 8 C C08 AG7 . . . B 2 -0.97 -5.609 -16.477 1 51.75 ? C08 AG7 201 A 1 HETATM 9 C C09 AG7 . . . B 2 -0.629 -4.804 -15.408 1 52.5 ? C09 AG7 201 A 1 HETATM 10 C C10 AG7 . . . B 2 -0.898 -3.448 -15.403 1 52.94 ? C10 AG7 201 A 1 HETATM 11 C C11 AG7 . . . B 2 -1.531 -2.893 -16.517 1 53.92 ? C11 AG7 201 A 1 HETATM 12 N N12 AG7 . . . B 2 -5.342 -4.663 -17.529 1 53.68 ? N12 AG7 201 A 1 HETATM 13 C C13 AG7 . . . B 2 -6.178 -4.767 -16.361 1 53.53 ? C13 AG7 201 A 1 HETATM 14 C C14 AG7 . . . B 2 -7.403 -5.628 -16.612 1 53.52 ? C14 AG7 201 A 1 HETATM 15 C C15 AG7 . . . B 2 -8.374 -5.139 -17.697 1 53.84 ? C15 AG7 201 A 1 HETATM 16 C C16 AG7 . . . B 2 -9.712 -5.867 -17.618 1 54.06 ? C16 AG7 201 A 1 HETATM 17 N N17 AG7 . . . B 2 -10.693 -4.958 -17.659 1 54.74 ? N17 AG7 201 A 1 HETATM 18 O O18 AG7 . . . B 2 -9.882 -7.072 -17.538 1 53.83 ? O18 AG7 201 A 1 HETATM 19 C C19 AG7 . . . B 2 -5.387 -5.406 -15.207 1 52.76 ? C19 AG7 201 A 1 HETATM 20 C C20 AG7 . . . B 2 -4.122 -4.685 -14.76 1 52.56 ? C20 AG7 201 A 1 HETATM 21 C C21 AG7 . . . B 2 -4.339 -3.681 -13.667 1 52.8 ? C21 AG7 201 A 1 HETATM 22 O O22 AG7 . . . B 2 -5.261 -2.791 -14.008 1 53.34 ? O22 AG7 201 A 1 HETATM 23 O O23 AG7 . . . B 2 -3.748 -3.674 -12.613 1 53.37 ? O23 AG7 201 A 1 HETATM 24 C C47 AG7 . . . B 2 -4.875 -3.507 -18.013 1 54.05 ? C47 AG7 201 A 1 HETATM 25 O O48 AG7 . . . B 2 -5.1 -2.408 -17.528 1 54.51 ? O48 AG7 201 A 1 HETATM 26 C C50 AG7 . . . B 2 -4.971 -1.385 -13.896 1 53.86 ? C50 AG7 201 A 1 HETATM 27 C C53 AG7 . . . B 2 -3.634 -1.012 -14.515 1 54.27 ? C53 AG7 201 A 1 HETATM 28 C C57 AG7 . . . B 2 -6.588 -2.431 -21.918 1 56.5 ? C57 AG7 201 A 1 HETATM 29 N N58 AG7 . . . B 2 -6.992 -3.44 -22.893 1 56.29 ? N58 AG7 201 A 1 HETATM 30 C C59 AG7 . . . B 2 -6.169 -3.865 -23.886 1 56.85 ? C59 AG7 201 A 1 HETATM 31 O O60 AG7 . . . B 2 -5.036 -3.445 -24.058 1 56.92 ? O60 AG7 201 A 1 HETATM 32 C C78 AG7 . . . B 2 -7.659 -1.541 -21.272 1 57.82 ? C78 AG7 201 A 1 HETATM 33 C C81 AG7 . . . B 2 -8.934 -2.342 -21.067 1 58.36 ? C81 AG7 201 A 1 HETATM 34 F F1 AG7 . . . B 2 -0.019 -5.371 -14.35 1 52.13 ? F1 AG7 201 A 1 HETATM 35 C C82 AG7 . . . B 2 -7.158 -0.947 -19.942 1 57.24 ? C82 AG7 201 A 1 HETATM 36 C C83 AG7 . . . B 2 -10.263 -3.583 -17.745 1 55.18 ? C83 AG7 201 A 1 HETATM 37 C C84 AG7 . . . B 2 -8.744 -3.656 -17.546 1 54.27 ? C84 AG7 201 A 1 HETATM 38 C C1 AG7 . . . B 2 -6.685 -4.922 -24.813 1 56.75 ? C1 AG7 201 A 1 HETATM 39 C C2 AG7 . . . B 2 -6.193 -5.252 -26.101 1 56.19 ? C2 AG7 201 A 1 HETATM 40 C C3 AG7 . . . B 2 -6.984 -6.279 -26.51 1 56.17 ? C3 AG7 201 A 1 HETATM 41 O O4 AG7 . . . B 2 -7.865 -6.542 -25.528 1 57.11 ? O4 AG7 201 A 1 HETATM 42 N N5 AG7 . . . B 2 -7.67 -5.706 -24.483 1 57.2 ? N5 AG7 201 A 1 HETATM 43 C C4 AG7 . . . B 2 -7.029 -7.093 -27.754 1 56.48 ? C4 AG7 201 A 1 HETATM 44 H H2 AG7 . . . B 2 -3.826 -3.17 -21.222 1 56.83 ? H2 AG7 201 A 1 HETATM 45 H H3 AG7 . . . B 2 -4.407 -2.026 -20.368 1 56.83 ? H3 AG7 201 A 1 HETATM 46 H H27 AG7 . . . B 2 -3.886 -4.642 -19.413 1 53.46 ? H27 AG7 201 A 1 HETATM 47 H H28 AG7 . . . B 2 -2 -3.258 -19.61 1 50.33 ? H28 AG7 201 A 1 HETATM 48 H H29 AG7 . . . B 2 -2.668 -2.168 -18.743 1 50.33 ? H29 AG7 201 A 1 HETATM 49 H H30 AG7 . . . B 2 -1.827 -5.586 -18.283 1 65.86 ? H30 AG7 201 A 1 HETATM 50 H H31 AG7 . . . B 2 -0.781 -6.519 -16.46 1 55.4 ? H31 AG7 201 A 1 HETATM 51 H H33 AG7 . . . B 2 -0.662 -2.919 -14.676 1 60.48 ? H33 AG7 201 A 1 HETATM 52 H H34 AG7 . . . B 2 -1.718 -1.982 -16.521 1 64.48 ? H34 AG7 201 A 1 HETATM 53 H H49 AG7 . . . B 2 -5.111 -5.391 -17.928 1 51.75 ? H49 AG7 201 A 1 HETATM 54 H H91 AG7 . . . B 2 -6.444 -3.87 -16.108 1 53.78 ? H91 AG7 201 A 1 HETATM 55 H H35 AG7 . . . B 2 -7.881 -5.749 -15.777 1 50.13 ? H35 AG7 201 A 1 HETATM 56 H H36 AG7 . . . B 2 -7.142 -6.522 -16.889 1 50.13 ? H36 AG7 201 A 1 HETATM 57 H H94 AG7 . . . B 2 -7.975 -5.323 -18.562 1 43.84 ? H94 AG7 201 A 1 HETATM 58 H H39 AG7 . . . B 2 -11.523 -5.181 -17.621 1 53.77 ? H39 AG7 201 A 1 HETATM 59 H H191 AG7 . . . B 2 -6.136 -5.428 -14.557 1 56.77 ? H191 AG7 201 A 1 HETATM 60 H H192 AG7 . . . B 2 -5.466 -5.799 -16.127 1 56.77 ? H192 AG7 201 A 1 HETATM 61 H H41 AG7 . . . B 2 -3.796 -4.164 -15.51 1 58.02 ? H41 AG7 201 A 1 HETATM 62 H H42 AG7 . . . B 2 -3.331 -5.181 -14.481 1 58.02 ? H42 AG7 201 A 1 HETATM 63 H H51 AG7 . . . B 2 -4.98 -1.141 -12.957 1 64.14 ? H51 AG7 201 A 1 HETATM 64 H H52 AG7 . . . B 2 -5.682 -0.883 -14.324 1 64.14 ? H52 AG7 201 A 1 HETATM 65 H H53 AG7 . . . B 2 -2.892 -1.409 -14.033 1 64.56 ? H53 AG7 201 A 1 HETATM 66 H H54 AG7 . . . B 2 -3.505 -0.052 -14.54 1 64.56 ? H54 AG7 201 A 1 HETATM 67 H H56 AG7 . . . B 2 -3.603 -1.343 -15.426 1 64.56 ? H56 AG7 201 A 1 HETATM 68 H H77 AG7 . . . B 2 -5.938 -1.861 -22.358 1 53.72 ? H77 AG7 201 A 1 HETATM 69 H H61 AG7 . . . B 2 -7.776 -3.787 -22.824 1 51.24 ? H61 AG7 201 A 1 HETATM 70 H H79 AG7 . . . B 2 -7.851 -0.809 -21.878 1 64.82 ? H79 AG7 201 A 1 HETATM 71 H H82 AG7 . . . B 2 -9.312 -2.609 -21.919 1 72.28 ? H82 AG7 201 A 1 HETATM 72 H H84 AG7 . . . B 2 -8.751 -3.149 -20.561 1 72.28 ? H84 AG7 201 A 1 HETATM 73 H H85 AG7 . . . B 2 -9.614 -1.847 -20.583 1 72.28 ? H85 AG7 201 A 1 HETATM 74 H H86 AG7 . . . B 2 -7.059 -1.613 -19.246 1 63.19 ? H86 AG7 201 A 1 HETATM 75 H H87 AG7 . . . B 2 -7.783 -0.28 -19.617 1 63.19 ? H87 AG7 201 A 1 HETATM 76 H H88 AG7 . . . B 2 -6.3 -0.511 -20.06 1 63.19 ? H88 AG7 201 A 1 HETATM 77 H H89 AG7 . . . B 2 -10.501 -3.204 -18.605 1 55.37 ? H89 AG7 201 A 1 HETATM 78 H H90 AG7 . . . B 2 -10.688 -3.041 -17.062 1 55.37 ? H90 AG7 201 A 1 HETATM 79 H H92 AG7 . . . B 2 -8.268 -3.087 -18.169 1 46.79 ? H92 AG7 201 A 1 HETATM 80 H H93 AG7 . . . B 2 -8.53 -3.351 -16.651 1 46.79 ? H93 AG7 201 A 1 HETATM 81 H H8 AG7 . . . B 2 -5.496 -4.852 -26.569 1 56.39 ? H8 AG7 201 A 1 HETATM 82 H H5 AG7 . . . B 2 -7.245 -6.544 -28.524 1 64.49 ? H5 AG7 201 A 1 HETATM 83 H H6 AG7 . . . B 2 -6.176 -7.522 -27.924 1 64.49 ? H6 AG7 201 A 1 HETATM 84 H H7 AG7 . . . B 2 -7.708 -7.781 -27.67 1 64.49 ? H7 AG7 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #