data_9DAH
#
_model_server_result.job_id            '_iAMj5gR7Ea384x4KLdM1g' 
_model_server_result.datetime_utc      '2025-08-04 12:48:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dah 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    9DAH 
#
_exptl.entry_id    9DAH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              133.103 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ASPARTIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.461 
_cell.angle_gamma         90 
_cell.entry_id            9DAH 
_cell.length_a            74.083 
_cell.length_b            133.902 
_cell.length_c            63.123 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DAH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 77 A CYS 77 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
disulf ? disulf2 B SG CYS 77 B CYS 77 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
#
_chem_comp.formula           'C4 H7 N O4' 
_chem_comp.formula_weight    133.103 
_chem_comp.id                ASP 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              'ASPARTIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ASP sing 55 n n 
N H ASP sing 56 n n 
N H2 ASP sing 57 n n 
CA C ASP sing 58 n n 
CA CB ASP sing 59 n n 
CA HA ASP sing 60 n n 
C O ASP doub 61 n n 
C OXT ASP sing 62 n n 
CB CG ASP sing 63 n n 
CB HB2 ASP sing 64 n n 
CB HB3 ASP sing 65 n n 
CG OD1 ASP doub 66 n n 
CG OD2 ASP sing 67 n n 
OD2 HD2 ASP sing 68 n n 
OXT HXT ASP sing 69 n n 
#
_atom_sites.entry_id                     9DAH 
_atom_sites.fract_transf_matrix[1][1]    0.013498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00477 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016802 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ASP A 1 401 427 ASP ASP . 
D 2 ASP B 1 401 428 ASP ASP . 
E 3 HOH A 1 501 134 HOH HOH . 
E 3 HOH A 2 502 175 HOH HOH . 
E 3 HOH A 3 503 161 HOH HOH . 
E 3 HOH A 4 504 156 HOH HOH . 
E 3 HOH A 5 505 106 HOH HOH . 
E 3 HOH A 6 506 342 HOH HOH . 
E 3 HOH A 7 507 321 HOH HOH . 
E 3 HOH A 8 508 118 HOH HOH . 
E 3 HOH A 9 509 84 HOH HOH . 
E 3 HOH A 10 510 213 HOH HOH . 
E 3 HOH A 11 511 113 HOH HOH . 
E 3 HOH A 12 512 98 HOH HOH . 
E 3 HOH A 13 513 50 HOH HOH . 
E 3 HOH A 14 514 176 HOH HOH . 
E 3 HOH A 15 515 5 HOH HOH . 
E 3 HOH A 16 516 302 HOH HOH . 
E 3 HOH A 17 517 97 HOH HOH . 
E 3 HOH A 18 518 259 HOH HOH . 
E 3 HOH A 19 519 171 HOH HOH . 
E 3 HOH A 20 520 458 HOH HOH . 
E 3 HOH A 21 521 10 HOH HOH . 
E 3 HOH A 22 522 350 HOH HOH . 
E 3 HOH A 23 523 446 HOH HOH . 
E 3 HOH A 24 524 432 HOH HOH . 
E 3 HOH A 25 525 371 HOH HOH . 
E 3 HOH A 26 526 349 HOH HOH . 
E 3 HOH A 27 527 122 HOH HOH . 
E 3 HOH A 28 528 80 HOH HOH . 
E 3 HOH A 29 529 56 HOH HOH . 
E 3 HOH A 30 530 436 HOH HOH . 
E 3 HOH A 31 531 417 HOH HOH . 
F 3 HOH B 1 501 146 HOH HOH . 
F 3 HOH B 2 502 496 HOH HOH . 
F 3 HOH B 3 503 337 HOH HOH . 
F 3 HOH B 4 504 3 HOH HOH . 
F 3 HOH B 5 505 29 HOH HOH . 
F 3 HOH B 6 506 20 HOH HOH . 
F 3 HOH B 7 507 103 HOH HOH . 
F 3 HOH B 8 508 343 HOH HOH . 
F 3 HOH B 9 509 51 HOH HOH . 
F 3 HOH B 10 510 11 HOH HOH . 
F 3 HOH B 11 511 322 HOH HOH . 
F 3 HOH B 12 512 154 HOH HOH . 
F 3 HOH B 13 513 369 HOH HOH . 
F 3 HOH B 14 514 174 HOH HOH . 
F 3 HOH B 15 515 17 HOH HOH . 
F 3 HOH B 16 516 376 HOH HOH . 
F 3 HOH B 17 517 466 HOH HOH . 
F 3 HOH B 18 518 14 HOH HOH . 
F 3 HOH B 19 519 363 HOH HOH . 
F 3 HOH B 20 520 159 HOH HOH . 
F 3 HOH B 21 521 76 HOH HOH . 
F 3 HOH B 22 522 82 HOH HOH . 
F 3 HOH B 23 523 60 HOH HOH . 
F 3 HOH B 24 524 38 HOH HOH . 
F 3 HOH B 25 525 407 HOH HOH . 
F 3 HOH B 26 526 1 HOH HOH . 
F 3 HOH B 27 527 330 HOH HOH . 
F 3 HOH B 28 528 418 HOH HOH . 
F 3 HOH B 29 529 24 HOH HOH . 
F 3 HOH B 30 530 365 HOH HOH . 
F 3 HOH B 31 531 230 HOH HOH . 
F 3 HOH B 32 532 19 HOH HOH . 
F 3 HOH B 33 533 129 HOH HOH . 
F 3 HOH B 34 534 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ASP . . . D 2 16.582 -17.509 4.158 1 26.64 0 N ASP 401 B 1 
HETATM 2 C CA ASP . . . D 2 16.798 -16.417 5.14 1 28.19 0 CA ASP 401 B 1 
HETATM 3 C C ASP . . . D 2 16.142 -16.843 6.457 1 28.67 0 C ASP 401 B 1 
HETATM 4 O O ASP . . . D 2 16.85 -17.504 7.244 1 32.91 0 O ASP 401 B 1 
HETATM 5 C CB ASP . . . D 2 16.324 -15.066 4.623 1 28.53 0 CB ASP 401 B 1 
HETATM 6 C CG ASP . . . D 2 16.854 -13.858 5.461 1 29.96 0 CG ASP 401 B 1 
HETATM 7 O OD1 ASP . . . D 2 17.165 -14.057 6.659 1 32.8 0 OD1 ASP 401 B 1 
HETATM 8 O OD2 ASP . . . D 2 17.029 -12.741 4.884 1 34.6 0 OD2 ASP 401 B 1 
HETATM 9 O OXT ASP . . . D 2 14.958 -16.501 6.653 1 27.07 0 OXT ASP 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#