data_9DAL
#
_model_server_result.job_id            3t5QBYLVQmzgjam_FzHSag 
_model_server_result.datetime_utc      '2025-02-23 05:00:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dal 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    9DAL 
#
_exptl.entry_id    9DAL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              600.678 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9DAL 
_cell.length_a            95.05 
_cell.length_b            95.05 
_cell.length_c            46.18 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DAL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H41 F N4 O7' 
_chem_comp.formula_weight    600.678 
_chem_comp.id                AG7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RUPINTRIVIR, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 AG7 sing 1 n n 
C01 O03 AG7 doub 2 n n 
C01 C57 AG7 sing 3 n n 
C02 C04 AG7 sing 4 n n 
C02 H2 AG7 sing 5 n n 
C02 H3 AG7 sing 6 n n 
C04 C05 AG7 sing 7 n n 
C04 C47 AG7 sing 8 n n 
C04 H27 AG7 sing 9 n n 
C05 C06 AG7 sing 10 n n 
C05 H28 AG7 sing 11 n n 
C05 H29 AG7 sing 12 n n 
C06 C07 AG7 doub 13 n y 
C06 C11 AG7 sing 14 n y 
C07 C08 AG7 sing 15 n y 
C07 H30 AG7 sing 16 n n 
C08 C09 AG7 doub 17 n y 
C08 H31 AG7 sing 18 n n 
C09 C10 AG7 sing 19 n y 
C09 F1 AG7 sing 20 n n 
C10 C11 AG7 doub 21 n y 
C10 H33 AG7 sing 22 n n 
C11 H34 AG7 sing 23 n n 
N12 C13 AG7 sing 24 n n 
N12 C47 AG7 sing 25 n n 
N12 H49 AG7 sing 26 n n 
C13 C14 AG7 sing 27 n n 
C13 C19 AG7 sing 28 n n 
C13 H91 AG7 sing 29 n n 
C14 C15 AG7 sing 30 n n 
C14 H35 AG7 sing 31 n n 
C14 H36 AG7 sing 32 n n 
C15 C16 AG7 sing 33 n n 
C15 C84 AG7 sing 34 n n 
C15 H94 AG7 sing 35 n n 
C16 N17 AG7 sing 36 n n 
C16 O18 AG7 doub 37 n n 
N17 C83 AG7 sing 38 n n 
N17 H39 AG7 sing 39 n n 
C19 C20 AG7 sing 40 n n 
C19 H191 AG7 sing 41 n n 
C19 H192 AG7 sing 42 n n 
C20 C21 AG7 sing 43 n n 
C20 H41 AG7 sing 44 n n 
C20 H42 AG7 sing 45 n n 
C21 O22 AG7 sing 46 n n 
C21 O23 AG7 doub 47 n n 
O22 C50 AG7 sing 48 n n 
C47 O48 AG7 doub 49 n n 
C50 C53 AG7 sing 50 n n 
C50 H51 AG7 sing 51 n n 
C50 H52 AG7 sing 52 n n 
C53 H53 AG7 sing 53 n n 
C53 H54 AG7 sing 54 n n 
C53 H56 AG7 sing 55 n n 
C57 N58 AG7 sing 56 n n 
C57 C78 AG7 sing 57 n n 
C57 H77 AG7 sing 58 n n 
N58 C59 AG7 sing 59 n n 
N58 H61 AG7 sing 60 n n 
C59 O60 AG7 doub 61 n n 
C59 C1 AG7 sing 62 n n 
C78 C81 AG7 sing 63 n n 
C78 C82 AG7 sing 64 n n 
C78 H79 AG7 sing 65 n n 
C81 H82 AG7 sing 66 n n 
C81 H84 AG7 sing 67 n n 
C81 H85 AG7 sing 68 n n 
C82 H86 AG7 sing 69 n n 
C82 H87 AG7 sing 70 n n 
C82 H88 AG7 sing 71 n n 
C83 C84 AG7 sing 72 n n 
C83 H89 AG7 sing 73 n n 
C83 H90 AG7 sing 74 n n 
C84 H92 AG7 sing 75 n n 
C84 H93 AG7 sing 76 n n 
C1 C2 AG7 sing 77 n y 
C1 N5 AG7 doub 78 n y 
C2 C3 AG7 doub 79 n y 
C2 H8 AG7 sing 80 n n 
C3 O4 AG7 sing 81 n y 
C3 C4 AG7 sing 82 n n 
O4 N5 AG7 sing 83 n y 
C4 H5 AG7 sing 84 n n 
C4 H6 AG7 sing 85 n n 
C4 H7 AG7 sing 86 n n 
#
_atom_sites.entry_id                     9DAL 
_atom_sites.fract_transf_matrix[1][1]    0.010521 
_atom_sites.fract_transf_matrix[1][2]    0.006074 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021654 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           AG7 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      201 
_pdbx_nonpoly_scheme.auth_seq_num     201 
_pdbx_nonpoly_scheme.pdb_mon_id       AG7 
_pdbx_nonpoly_scheme.auth_mon_id      AG7 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 AG7 . . . B 2 6.264 -48.831 -16.926 1 72.95 ? C01 AG7 201 A 1 
HETATM 2 C C02 AG7 . . . B 2 6.938 -49.626 -15.757 1 79.79 ? C02 AG7 201 A 1 
HETATM 3 O O03 AG7 . . . B 2 6.216 -47.643 -16.9 1 77.21 ? O03 AG7 201 A 1 
HETATM 4 C C04 AG7 . . . B 2 7.412 -48.658 -14.65 1 79.26 ? C04 AG7 201 A 1 
HETATM 5 C C05 AG7 . . . B 2 8.08 -49.443 -13.498 1 80.18 ? C05 AG7 201 A 1 
HETATM 6 C C06 AG7 . . . B 2 6.996 -50.269 -12.751 1 82.4 ? C06 AG7 201 A 1 
HETATM 7 C C07 AG7 . . . B 2 6.099 -49.623 -11.904 1 80.61 ? C07 AG7 201 A 1 
HETATM 8 C C08 AG7 . . . B 2 5.125 -50.354 -11.234 1 81.75 ? C08 AG7 201 A 1 
HETATM 9 C C09 AG7 . . . B 2 5.049 -51.729 -11.408 1 86.64 ? C09 AG7 201 A 1 
HETATM 10 C C10 AG7 . . . B 2 5.946 -52.375 -12.252 1 87.83 ? C10 AG7 201 A 1 
HETATM 11 C C11 AG7 . . . B 2 6.918 -51.642 -12.927 1 87.22 ? C11 AG7 201 A 1 
HETATM 12 N N12 AG7 . . . B 2 8.419 -46.22 -14.768 1 67.92 ? N12 AG7 201 A 1 
HETATM 13 C C13 AG7 . . . B 2 9.395 -45.311 -15.347 1 79.41 ? C13 AG7 201 A 1 
HETATM 14 C C14 AG7 . . . B 2 8.639 -44.08 -15.919 1 73.86 ? C14 AG7 201 A 1 
HETATM 15 C C15 AG7 . . . B 2 7.809 -44.479 -17.227 1 77.31 ? C15 AG7 201 A 1 
HETATM 16 C C16 AG7 . . . B 2 7.138 -43.131 -17.833 1 80.14 ? C16 AG7 201 A 1 
HETATM 17 N N17 AG7 . . . B 2 7.37 -43.078 -19.145 1 84.27 ? N17 AG7 201 A 1 
HETATM 18 O O18 AG7 . . . B 2 6.531 -42.319 -17.202 1 76.33 ? O18 AG7 201 A 1 
HETATM 19 C C19 AG7 . . . B 2 10.443 -44.823 -14.348 1 79.27 ? C19 AG7 201 A 1 
HETATM 20 C C20 AG7 . . . B 2 10.872 -45.902 -13.316 1 65.28 ? C20 AG7 201 A 1 
HETATM 21 C C21 AG7 . . . B 2 12.193 -46.543 -13.793 1 76.44 ? C21 AG7 201 A 1 
HETATM 22 O O22 AG7 . . . B 2 12.367 -47.932 -13.684 1 76.89 ? O22 AG7 201 A 1 
HETATM 23 O O23 AG7 . . . B 2 13.058 -45.88 -14.279 1 85.05 ? O23 AG7 201 A 1 
HETATM 24 C C47 AG7 . . . B 2 8.419 -47.664 -15.215 1 76.19 ? C47 AG7 201 A 1 
HETATM 25 O O48 AG7 . . . B 2 9.208 -48.039 -16.016 1 73.5 ? O48 AG7 201 A 1 
HETATM 26 C C50 AG7 . . . B 2 13.105 -48.473 -14.734 1 91.29 ? C50 AG7 201 A 1 
HETATM 27 C C53 AG7 . . . B 2 12.744 -49.941 -14.916 1 92.37 ? C53 AG7 201 A 1 
HETATM 28 C C57 AG7 . . . B 2 5.632 -49.577 -18.132 1 75.52 ? C57 AG7 201 A 1 
HETATM 29 N N58 AG7 . . . B 2 4.228 -49.183 -18.127 1 73.08 ? N58 AG7 201 A 1 
HETATM 30 C C59 AG7 . . . B 2 3.174 -50.183 -17.885 1 71.96 ? C59 AG7 201 A 1 
HETATM 31 O O60 AG7 . . . B 2 3.451 -51.313 -17.693 1 73.14 ? O60 AG7 201 A 1 
HETATM 32 C C78 AG7 . . . B 2 6.284 -49.228 -19.45 1 75.25 ? C78 AG7 201 A 1 
HETATM 33 C C81 AG7 . . . B 2 5.679 -47.962 -20.029 1 80.3 ? C81 AG7 201 A 1 
HETATM 34 F F1 AG7 . . . B 2 4.098 -52.444 -10.752 1 83.74 ? F1 AG7 201 A 1 
HETATM 35 C C82 AG7 . . . B 2 7.77 -49.027 -19.276 1 71.69 ? C82 AG7 201 A 1 
HETATM 36 C C83 AG7 . . . B 2 8.177 -44.3 -19.555 1 81.7 ? C83 AG7 201 A 1 
HETATM 37 C C84 AG7 . . . B 2 8.634 -44.966 -18.176 1 69.64 ? C84 AG7 201 A 1 
HETATM 38 C C1 AG7 . . . B 2 1.702 -49.729 -17.854 1 77.13 ? C1 AG7 201 A 1 
HETATM 39 C C2 AG7 . . . B 2 0.59 -50.52 -17.977 1 83.01 ? C2 AG7 201 A 1 
HETATM 40 C C3 AG7 . . . B 2 -0.508 -49.712 -17.868 1 90.14 ? C3 AG7 201 A 1 
HETATM 41 O O4 AG7 . . . B 2 -0.087 -48.454 -17.672 1 78.53 ? O4 AG7 201 A 1 
HETATM 42 N N5 AG7 . . . B 2 1.296 -48.469 -17.655 1 74.42 ? N5 AG7 201 A 1 
HETATM 43 C C4 AG7 . . . B 2 -1.959 -50.153 -17.95 1 116.07 ? C4 AG7 201 A 1 
HETATM 44 H H2 AG7 . . . B 2 7.663 -50.182 -16.083 1 96.81 ? H2 AG7 201 A 1 
HETATM 45 H H3 AG7 . . . B 2 6.262 -50.238 -15.427 1 96.81 ? H3 AG7 201 A 1 
HETATM 46 H H27 AG7 . . . B 2 6.64 -48.184 -14.303 1 96.17 ? H27 AG7 201 A 1 
HETATM 47 H H28 AG7 . . . B 2 8.767 -50.027 -13.856 1 97.27 ? H28 AG7 201 A 1 
HETATM 48 H H29 AG7 . . . B 2 8.513 -48.829 -12.885 1 97.27 ? H29 AG7 201 A 1 
HETATM 49 H H30 AG7 . . . B 2 6.139 -48.702 -11.779 1 97.79 ? H30 AG7 201 A 1 
HETATM 50 H H31 AG7 . . . B 2 4.525 -49.925 -10.667 1 99.15 ? H31 AG7 201 A 1 
HETATM 51 H H33 AG7 . . . B 2 5.892 -53.296 -12.369 1 106.46 ? H33 AG7 201 A 1 
HETATM 52 H H34 AG7 . . . B 2 7.516 -52.078 -13.49 1 105.73 ? H34 AG7 201 A 1 
HETATM 53 H H49 AG7 . . . B 2 7.85 -45.932 -14.191 1 82.56 ? H49 AG7 201 A 1 
HETATM 54 H H91 AG7 . . . B 2 9.85 -45.788 -16.057 1 96.35 ? H91 AG7 201 A 1 
HETATM 55 H H35 AG7 . . . B 2 8.066 -43.694 -15.238 1 89.69 ? H35 AG7 201 A 1 
HETATM 56 H H36 AG7 . . . B 2 9.274 -43.392 -16.171 1 89.69 ? H36 AG7 201 A 1 
HETATM 57 H H94 AG7 . . . B 2 7.11 -45.105 -16.98 1 93.83 ? H94 AG7 201 A 1 
HETATM 58 H H39 AG7 . . . B 2 7.108 -42.45 -19.67 1 102.18 ? H39 AG7 201 A 1 
HETATM 59 H H191 AG7 . . . B 2 11.22 -44.542 -14.851 1 96.18 ? H191 AG7 201 A 1 
HETATM 60 H H192 AG7 . . . B 2 10.116 -44.028 -13.903 1 96.18 ? H192 AG7 201 A 1 
HETATM 61 H H41 AG7 . . . B 2 11.032 -45.512 -12.442 1 79.4 ? H41 AG7 201 A 1 
HETATM 62 H H42 AG7 . . . B 2 10.201 -46.588 -13.185 1 79.4 ? H42 AG7 201 A 1 
HETATM 63 H H51 AG7 . . . B 2 14.051 -48.377 -14.542 1 110.61 ? H51 AG7 201 A 1 
HETATM 64 H H52 AG7 . . . B 2 12.921 -47.978 -15.548 1 110.61 ? H52 AG7 201 A 1 
HETATM 65 H H53 AG7 . . . B 2 12.948 -50.46 -14.122 1 111.9 ? H53 AG7 201 A 1 
HETATM 66 H H54 AG7 . . . B 2 11.805 -50.057 -15.128 1 111.9 ? H54 AG7 201 A 1 
HETATM 67 H H56 AG7 . . . B 2 13.262 -50.308 -15.649 1 111.9 ? H56 AG7 201 A 1 
HETATM 68 H H77 AG7 . . . B 2 5.68 -50.534 -17.985 1 91.69 ? H77 AG7 201 A 1 
HETATM 69 H H61 AG7 . . . B 2 4.017 -48.359 -18.249 1 88.75 ? H61 AG7 201 A 1 
HETATM 70 H H79 AG7 . . . B 2 6.139 -49.958 -20.072 1 91.36 ? H79 AG7 201 A 1 
HETATM 71 H H82 AG7 . . . B 2 5.639 -47.264 -19.357 1 97.42 ? H82 AG7 201 A 1 
HETATM 72 H H84 AG7 . . . B 2 6.222 -47.632 -20.762 1 97.42 ? H84 AG7 201 A 1 
HETATM 73 H H85 AG7 . . . B 2 4.783 -48.096 -20.375 1 97.42 ? H85 AG7 201 A 1 
HETATM 74 H H86 AG7 . . . B 2 7.985 -48.175 -18.865 1 87.08 ? H86 AG7 201 A 1 
HETATM 75 H H87 AG7 . . . B 2 8.215 -49.053 -20.138 1 87.08 ? H87 AG7 201 A 1 
HETATM 76 H H88 AG7 . . . B 2 8.154 -49.729 -18.728 1 87.08 ? H88 AG7 201 A 1 
HETATM 77 H H89 AG7 . . . B 2 8.935 -44.039 -20.101 1 99.1 ? H89 AG7 201 A 1 
HETATM 78 H H90 AG7 . . . B 2 7.639 -44.91 -20.084 1 99.1 ? H90 AG7 201 A 1 
HETATM 79 H H92 AG7 . . . B 2 9.569 -44.788 -17.991 1 84.62 ? H92 AG7 201 A 1 
HETATM 80 H H93 AG7 . . . B 2 8.53 -45.928 -18.238 1 84.62 ? H93 AG7 201 A 1 
HETATM 81 H H8 AG7 . . . B 2 0.579 -51.44 -18.115 1 100.67 ? H8 AG7 201 A 1 
HETATM 82 H H5 AG7 . . . B 2 -2.165 -50.519 -18.824 1 140.35 ? H5 AG7 201 A 1 
HETATM 83 H H6 AG7 . . . B 2 -2.562 -49.411 -17.788 1 140.35 ? H6 AG7 201 A 1 
HETATM 84 H H7 AG7 . . . B 2 -2.13 -50.838 -17.285 1 140.35 ? H7 AG7 201 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           84 
#