data_9DAP # _model_server_result.job_id xU1rZkDuq6D7VCLAqlg7DA _model_server_result.datetime_utc '2025-02-22 21:16:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9DAP # _exptl.entry_id 9DAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 600.678 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DAP _cell.length_a 97.329 _cell.length_b 97.329 _cell.length_c 43.77 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 139 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 139 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id AG7 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AG7 _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.765 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H41 F N4 O7' _chem_comp.formula_weight 600.678 _chem_comp.id AG7 _chem_comp.mon_nstd_flag . _chem_comp.name '4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE-3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RUPINTRIVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AG7 sing 1 n n C01 O03 AG7 doub 2 n n C01 C57 AG7 sing 3 n n C02 C04 AG7 sing 4 n n C02 H2 AG7 sing 5 n n C02 H3 AG7 sing 6 n n C04 C05 AG7 sing 7 n n C04 C47 AG7 sing 8 n n C04 H27 AG7 sing 9 n n C05 C06 AG7 sing 10 n n C05 H28 AG7 sing 11 n n C05 H29 AG7 sing 12 n n C06 C07 AG7 doub 13 n y C06 C11 AG7 sing 14 n y C07 C08 AG7 sing 15 n y C07 H30 AG7 sing 16 n n C08 C09 AG7 doub 17 n y C08 H31 AG7 sing 18 n n C09 C10 AG7 sing 19 n y C09 F1 AG7 sing 20 n n C10 C11 AG7 doub 21 n y C10 H33 AG7 sing 22 n n C11 H34 AG7 sing 23 n n N12 C13 AG7 sing 24 n n N12 C47 AG7 sing 25 n n N12 H49 AG7 sing 26 n n C13 C14 AG7 sing 27 n n C13 C19 AG7 sing 28 n n C13 H91 AG7 sing 29 n n C14 C15 AG7 sing 30 n n C14 H35 AG7 sing 31 n n C14 H36 AG7 sing 32 n n C15 C16 AG7 sing 33 n n C15 C84 AG7 sing 34 n n C15 H94 AG7 sing 35 n n C16 N17 AG7 sing 36 n n C16 O18 AG7 doub 37 n n N17 C83 AG7 sing 38 n n N17 H39 AG7 sing 39 n n C19 C20 AG7 sing 40 n n C19 H191 AG7 sing 41 n n C19 H192 AG7 sing 42 n n C20 C21 AG7 sing 43 n n C20 H41 AG7 sing 44 n n C20 H42 AG7 sing 45 n n C21 O22 AG7 sing 46 n n C21 O23 AG7 doub 47 n n O22 C50 AG7 sing 48 n n C47 O48 AG7 doub 49 n n C50 C53 AG7 sing 50 n n C50 H51 AG7 sing 51 n n C50 H52 AG7 sing 52 n n C53 H53 AG7 sing 53 n n C53 H54 AG7 sing 54 n n C53 H56 AG7 sing 55 n n C57 N58 AG7 sing 56 n n C57 C78 AG7 sing 57 n n C57 H77 AG7 sing 58 n n N58 C59 AG7 sing 59 n n N58 H61 AG7 sing 60 n n C59 O60 AG7 doub 61 n n C59 C1 AG7 sing 62 n n C78 C81 AG7 sing 63 n n C78 C82 AG7 sing 64 n n C78 H79 AG7 sing 65 n n C81 H82 AG7 sing 66 n n C81 H84 AG7 sing 67 n n C81 H85 AG7 sing 68 n n C82 H86 AG7 sing 69 n n C82 H87 AG7 sing 70 n n C82 H88 AG7 sing 71 n n C83 C84 AG7 sing 72 n n C83 H89 AG7 sing 73 n n C83 H90 AG7 sing 74 n n C84 H92 AG7 sing 75 n n C84 H93 AG7 sing 76 n n C1 C2 AG7 sing 77 n y C1 N5 AG7 doub 78 n y C2 C3 AG7 doub 79 n y C2 H8 AG7 sing 80 n n C3 O4 AG7 sing 81 n y C3 C4 AG7 sing 82 n n O4 N5 AG7 sing 83 n y C4 H5 AG7 sing 84 n n C4 H6 AG7 sing 85 n n C4 H7 AG7 sing 86 n n # _atom_sites.entry_id 9DAP _atom_sites.fract_transf_matrix[1][1] 0.010274 _atom_sites.fract_transf_matrix[1][2] 0.005932 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AG7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id AG7 _pdbx_nonpoly_scheme.auth_mon_id AG7 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AG7 . . . B 2 -40.276 -30.511 -9.33 1 44.1 ? C01 AG7 201 A 1 HETATM 2 C C02 AG7 . . . B 2 -40.593 -31.519 -8.242 1 49.88 ? C02 AG7 201 A 1 HETATM 3 O O03 AG7 . . . B 2 -39.308 -29.785 -9.284 1 42.42 ? O03 AG7 201 A 1 HETATM 4 C C04 AG7 . . . B 2 -39.672 -31.578 -7.022 1 40.1 ? C04 AG7 201 A 1 HETATM 5 C C05 AG7 . . . B 2 -40.26 -32.55 -6.002 1 43.3 ? C05 AG7 201 A 1 HETATM 6 C C06 AG7 . . . B 2 -41.362 -31.965 -5.156 1 46.84 ? C06 AG7 201 A 1 HETATM 7 C C07 AG7 . . . B 2 -41.161 -30.936 -4.249 1 41.61 ? C07 AG7 201 A 1 HETATM 8 C C08 AG7 . . . B 2 -42.209 -30.432 -3.481 1 50.31 ? C08 AG7 201 A 1 HETATM 9 C C09 AG7 . . . B 2 -43.473 -30.97 -3.625 1 49.08 ? C09 AG7 201 A 1 HETATM 10 C C10 AG7 . . . B 2 -43.713 -31.984 -4.505 1 53.8 ? C10 AG7 201 A 1 HETATM 11 C C11 AG7 . . . B 2 -42.655 -32.465 -5.256 1 56.25 ? C11 AG7 201 A 1 HETATM 12 N N12 AG7 . . . B 2 -37.239 -31.484 -7.075 1 42.79 ? N12 AG7 201 A 1 HETATM 13 C C13 AG7 . . . B 2 -35.887 -31.818 -7.468 1 45.83 ? C13 AG7 201 A 1 HETATM 14 C C14 AG7 . . . B 2 -35.288 -30.622 -8.199 1 39.04 ? C14 AG7 201 A 1 HETATM 15 C C15 AG7 . . . B 2 -35.89 -30.147 -9.545 1 38.65 ? C15 AG7 201 A 1 HETATM 16 C C16 AG7 . . . B 2 -35.055 -29.027 -10.171 1 38.1 ? C16 AG7 201 A 1 HETATM 17 N N17 AG7 . . . B 2 -34.922 -29.284 -11.477 1 45.43 ? N17 AG7 201 A 1 HETATM 18 O O18 AG7 . . . B 2 -34.563 -28.063 -9.606 1 39.96 ? O18 AG7 201 A 1 HETATM 19 C C19 AG7 . . . B 2 -35.086 -32.168 -6.214 1 48.11 ? C19 AG7 201 A 1 HETATM 20 C C20 AG7 . . . B 2 -35.67 -33.329 -5.428 1 45.62 ? C20 AG7 201 A 1 HETATM 21 C C21 AG7 . . . B 2 -35.768 -34.624 -6.19 1 57.04 ? C21 AG7 201 A 1 HETATM 22 O O22 AG7 . . . B 2 -36.708 -35.368 -5.648 1 73.43 ? O22 AG7 201 A 1 HETATM 23 O O23 AG7 . . . B 2 -35.107 -34.996 -7.127 1 51.75 ? O23 AG7 201 A 1 HETATM 24 C C47 AG7 . . . B 2 -38.339 -32.08 -7.536 1 45.01 ? C47 AG7 201 A 1 HETATM 25 O O48 AG7 . . . B 2 -38.296 -32.974 -8.361 1 53.25 ? O48 AG7 201 A 1 HETATM 26 C C50 AG7 . . . B 2 -37.478 -36.285 -6.431 1 97.54 ? C50 AG7 201 A 1 HETATM 27 C C53 AG7 . . . B 2 -38.836 -36.182 -5.772 1 97.93 ? C53 AG7 201 A 1 HETATM 28 C C57 AG7 . . . B 2 -41.208 -30.418 -10.557 1 58.63 ? C57 AG7 201 A 1 HETATM 29 N N58 AG7 . . . B 2 -41.601 -29.013 -10.488 1 53.56 ? N58 AG7 201 A 1 HETATM 30 C C59 AG7 . . . B 2 -42.857 -28.546 -10.273 1 59.64 ? C59 AG7 201 A 1 HETATM 31 O O60 AG7 . . . B 2 -43.855 -29.238 -10.11 1 62.78 ? O60 AG7 201 A 1 HETATM 32 C C78 AG7 . . . B 2 -40.546 -30.916 -11.84 1 57.36 ? C78 AG7 201 A 1 HETATM 33 C C81 AG7 . . . B 2 -41.124 -30.058 -12.956 1 64.29 ? C81 AG7 201 A 1 HETATM 34 F F1 AG7 . . . B 2 -44.512 -30.517 -2.91 1 52.14 ? F1 AG7 201 A 1 HETATM 35 C C82 AG7 . . . B 2 -39.019 -30.926 -11.902 1 64.97 ? C82 AG7 201 A 1 HETATM 36 C C83 AG7 . . . B 2 -35.569 -30.482 -11.948 1 43.81 ? C83 AG7 201 A 1 HETATM 37 C C84 AG7 . . . B 2 -35.926 -31.213 -10.647 1 41.93 ? C84 AG7 201 A 1 HETATM 38 C C1 AG7 . . . B 2 -42.994 -27.053 -10.181 1 65.85 ? C1 AG7 201 A 1 HETATM 39 C C2 AG7 . . . B 2 -44.077 -26.349 -9.583 1 79.06 ? C2 AG7 201 A 1 HETATM 40 C C3 AG7 . . . B 2 -43.751 -25.034 -9.7 1 78.52 ? C3 AG7 201 A 1 HETATM 41 O O4 AG7 . . . B 2 -42.555 -24.964 -10.311 1 73.42 ? O4 AG7 201 A 1 HETATM 42 N N5 AG7 . . . B 2 -42.091 -26.208 -10.598 1 66.77 ? N5 AG7 201 A 1 HETATM 43 C C4 AG7 . . . B 2 -44.43 -23.77 -9.3 1 56.74 ? C4 AG7 201 A 1 HETATM 44 H H2 AG7 . . . B 2 -40.681 -32.402 -8.634 1 63.38 ? H2 AG7 201 A 1 HETATM 45 H H3 AG7 . . . B 2 -41.493 -31.292 -7.959 1 63.38 ? H3 AG7 201 A 1 HETATM 46 H H27 AG7 . . . B 2 -39.586 -30.694 -6.633 1 53.39 ? H27 AG7 201 A 1 HETATM 47 H H28 AG7 . . . B 2 -40.593 -33.33 -6.473 1 57.48 ? H28 AG7 201 A 1 HETATM 48 H H29 AG7 . . . B 2 -39.55 -32.866 -5.422 1 57.48 ? H29 AG7 201 A 1 HETATM 49 H H30 AG7 . . . B 2 -40.315 -30.566 -4.141 1 57.17 ? H30 AG7 201 A 1 HETATM 50 H H31 AG7 . . . B 2 -42.063 -29.74 -2.878 1 67.77 ? H31 AG7 201 A 1 HETATM 51 H H33 AG7 . . . B 2 -44.566 -32.342 -4.599 1 69.63 ? H33 AG7 201 A 1 HETATM 52 H H34 AG7 . . . B 2 -42.821 -33.158 -5.853 1 72.39 ? H34 AG7 201 A 1 HETATM 53 H H49 AG7 . . . B 2 -37.333 -30.85 -6.501 1 57.54 ? H49 AG7 201 A 1 HETATM 54 H H91 AG7 . . . B 2 -35.926 -32.586 -8.059 1 61.05 ? H91 AG7 201 A 1 HETATM 55 H H35 AG7 . . . B 2 -35.26 -29.872 -7.585 1 52.66 ? H35 AG7 201 A 1 HETATM 56 H H36 AG7 . . . B 2 -34.358 -30.823 -8.385 1 52.66 ? H36 AG7 201 A 1 HETATM 57 H H94 AG7 . . . B 2 -36.776 -29.797 -9.363 1 50.62 ? H94 AG7 201 A 1 HETATM 58 H H39 AG7 . . . B 2 -34.479 -28.764 -11.999 1 56.62 ? H39 AG7 201 A 1 HETATM 59 H H191 AG7 . . . B 2 -34.179 -32.379 -6.482 1 65.1 ? H191 AG7 201 A 1 HETATM 60 H H41 AG7 . . . B 2 -36.566 -33.115 -5.125 1 62.18 ? H41 AG7 201 A 1 HETATM 61 H H42 AG7 . . . B 2 -35.162 -33.487 -4.618 1 62.18 ? H42 AG7 201 A 1 HETATM 62 H H51 AG7 . . . B 2 -37.501 -36.009 -7.36 1 121.18 ? H51 AG7 201 A 1 HETATM 63 H H52 AG7 . . . B 2 -37.114 -37.182 -6.375 1 121.18 ? H52 AG7 201 A 1 HETATM 64 H H53 AG7 . . . B 2 -38.853 -36.655 -4.926 1 121.77 ? H53 AG7 201 A 1 HETATM 65 H H54 AG7 . . . B 2 -39.094 -35.259 -5.625 1 121.77 ? H54 AG7 201 A 1 HETATM 66 H H56 AG7 . . . B 2 -39.501 -36.588 -6.349 1 121.77 ? H56 AG7 201 A 1 HETATM 67 H H77 AG7 . . . B 2 -42.004 -30.946 -10.387 1 71.19 ? H77 AG7 201 A 1 HETATM 68 H H61 AG7 . . . B 2 -40.971 -28.432 -10.56 1 65.48 ? H61 AG7 201 A 1 HETATM 69 H H79 AG7 . . . B 2 -40.846 -31.827 -11.985 1 67.99 ? H79 AG7 201 A 1 HETATM 70 H H82 AG7 . . . B 2 -42.09 -30.004 -12.882 1 74.71 ? H82 AG7 201 A 1 HETATM 71 H H84 AG7 . . . B 2 -40.772 -29.155 -12.912 1 74.71 ? H84 AG7 201 A 1 HETATM 72 H H85 AG7 . . . B 2 -40.916 -30.403 -13.837 1 74.71 ? H85 AG7 201 A 1 HETATM 73 H H86 AG7 . . . B 2 -38.687 -31.017 -12.809 1 77.73 ? H86 AG7 201 A 1 HETATM 74 H H87 AG7 . . . B 2 -38.651 -30.107 -11.536 1 77.73 ? H87 AG7 201 A 1 HETATM 75 H H88 AG7 . . . B 2 -38.678 -31.669 -11.385 1 77.73 ? H88 AG7 201 A 1 HETATM 76 H H89 AG7 . . . B 2 -34.971 -30.999 -12.509 1 53.54 ? H89 AG7 201 A 1 HETATM 77 H H90 AG7 . . . B 2 -36.357 -30.274 -12.474 1 53.54 ? H90 AG7 201 A 1 HETATM 78 H H92 AG7 . . . B 2 -36.767 -31.682 -10.694 1 52.77 ? H92 AG7 201 A 1 HETATM 79 H H93 AG7 . . . B 2 -35.244 -31.879 -10.469 1 52.77 ? H93 AG7 201 A 1 HETATM 80 H H8 AG7 . . . B 2 -44.844 -26.706 -9.197 1 96.4 ? H8 AG7 201 A 1 HETATM 81 H H5 AG7 . . . B 2 -43.918 -23.294 -8.627 1 69.89 ? H5 AG7 201 A 1 HETATM 82 H H6 AG7 . . . B 2 -45.311 -23.945 -8.934 1 69.89 ? H6 AG7 201 A 1 HETATM 83 H H7 AG7 . . . B 2 -44.527 -23.193 -10.073 1 69.89 ? H7 AG7 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 83 #