data_9DBQ
#
_model_server_result.job_id            7sxJ4SKHmrwL6fE6rPghng 
_model_server_result.datetime_utc      '2024-11-22 12:52:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":909}' 
#
_entry.id    9DBQ 
#
_exptl.entry_id    9DBQ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DBQ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 374 n n 
CBA CAB Y01 sing 375 n n 
CBA CAN Y01 sing 376 n n 
CAN CAJ Y01 sing 377 n n 
CAJ CAO Y01 sing 378 n n 
CAO CBB Y01 sing 379 n n 
CBB CAC Y01 sing 380 n n 
CBB CBE Y01 sing 381 n n 
CBE CAP Y01 sing 382 n n 
CBE CBI Y01 sing 383 n n 
CAP CAQ Y01 sing 384 n n 
CAQ CBG Y01 sing 385 n n 
CBG CBI Y01 sing 386 n n 
CBG CBD Y01 sing 387 n n 
CBI CAE Y01 sing 388 n n 
CBI CAU Y01 sing 389 n n 
CAU CAS Y01 sing 390 n n 
CAS CBF Y01 sing 391 n n 
CBF CBD Y01 sing 392 n n 
CBF CBH Y01 sing 393 n n 
CBD CAK Y01 sing 394 n n 
CAK CAI Y01 sing 395 n n 
CAI CAZ Y01 doub 396 n n 
CAZ CAV Y01 sing 397 n n 
CAZ CBH Y01 sing 398 n n 
CAV CBC Y01 sing 399 n n 
CBH CAD Y01 sing 400 n n 
CBH CAT Y01 sing 401 n n 
CAT CAR Y01 sing 402 n n 
CAR CBC Y01 sing 403 n n 
CBC OAW Y01 sing 404 n n 
OAW CAY Y01 sing 405 n n 
CAY OAG Y01 doub 406 n n 
CAY CAM Y01 sing 407 n n 
CAM CAL Y01 sing 408 n n 
CAL CAX Y01 sing 409 n n 
CAX OAH Y01 sing 410 n n 
CAX OAF Y01 doub 411 n n 
CAA HAA1 Y01 sing 412 n n 
CAA HAA2 Y01 sing 413 n n 
CAA HAA3 Y01 sing 414 n n 
CBA HBA Y01 sing 415 n n 
CAB HAB1 Y01 sing 416 n n 
CAB HAB2 Y01 sing 417 n n 
CAB HAB3 Y01 sing 418 n n 
CAN HAN1 Y01 sing 419 n n 
CAN HAN2 Y01 sing 420 n n 
CAJ HAJ1 Y01 sing 421 n n 
CAJ HAJ2 Y01 sing 422 n n 
CAO HAO1 Y01 sing 423 n n 
CAO HAO2 Y01 sing 424 n n 
CBB HBB Y01 sing 425 n n 
CAC HAC1 Y01 sing 426 n n 
CAC HAC2 Y01 sing 427 n n 
CAC HAC3 Y01 sing 428 n n 
CBE HBE Y01 sing 429 n n 
CAP HAP1 Y01 sing 430 n n 
CAP HAP2 Y01 sing 431 n n 
CAQ HAQ1 Y01 sing 432 n n 
CAQ HAQ2 Y01 sing 433 n n 
CBG HBG Y01 sing 434 n n 
CBD HBD Y01 sing 435 n n 
CAE HAE1 Y01 sing 436 n n 
CAE HAE2 Y01 sing 437 n n 
CAE HAE3 Y01 sing 438 n n 
CAU HAU1 Y01 sing 439 n n 
CAU HAU2 Y01 sing 440 n n 
CAS HAS1 Y01 sing 441 n n 
CAS HAS2 Y01 sing 442 n n 
CBF HBF Y01 sing 443 n n 
CAK HAK1 Y01 sing 444 n n 
CAK HAK2 Y01 sing 445 n n 
CAI HAI Y01 sing 446 n n 
CAV HAV1 Y01 sing 447 n n 
CAV HAV2 Y01 sing 448 n n 
CBC HBC Y01 sing 449 n n 
CAD HAD1 Y01 sing 450 n n 
CAD HAD2 Y01 sing 451 n n 
CAD HAD3 Y01 sing 452 n n 
CAT HAT1 Y01 sing 453 n n 
CAT HAT2 Y01 sing 454 n n 
CAR HAR1 Y01 sing 455 n n 
CAR HAR2 Y01 sing 456 n n 
CAM HAM1 Y01 sing 457 n n 
CAM HAM2 Y01 sing 458 n n 
CAL HAL1 Y01 sing 459 n n 
CAL HAL2 Y01 sing 460 n n 
OAH HAH Y01 sing 461 n n 
#
_atom_sites.entry_id                     9DBQ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 901 901 Y01 Y01 . 
D 2 Y01 A 1 902 902 Y01 Y01 . 
E 2 Y01 A 1 903 903 Y01 Y01 . 
F 2 Y01 A 1 904 906 Y01 Y01 . 
G 2 Y01 A 1 905 907 Y01 Y01 . 
H 2 Y01 A 1 906 908 Y01 Y01 . 
I 2 Y01 A 1 907 909 Y01 Y01 . 
J 2 Y01 A 1 908 911 Y01 Y01 . 
K 2 Y01 A 1 909 904 Y01 Y01 . 
L 2 Y01 A 1 910 910 Y01 Y01 . 
M 2 Y01 B 1 901 904 Y01 Y01 . 
N 2 Y01 B 1 902 910 Y01 Y01 . 
O 2 Y01 B 1 903 901 Y01 Y01 . 
P 2 Y01 B 1 904 902 Y01 Y01 . 
Q 2 Y01 B 1 905 903 Y01 Y01 . 
R 2 Y01 B 1 906 906 Y01 Y01 . 
S 2 Y01 B 1 907 907 Y01 Y01 . 
T 2 Y01 B 1 908 908 Y01 Y01 . 
U 2 Y01 B 1 909 909 Y01 Y01 . 
V 2 Y01 B 1 910 911 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . K 2 129.808 110.616 159.797 1 89.79 ? CAA Y01 909 A 1 
HETATM 2 C CBA Y01 . . . K 2 128.578 111.439 160.175 1 93.04 ? CBA Y01 909 A 1 
HETATM 3 C CAB Y01 . . . K 2 128.781 112.906 159.813 1 87.05 ? CAB Y01 909 A 1 
HETATM 4 C CAN Y01 . . . K 2 128.161 111.277 161.641 1 89.15 ? CAN Y01 909 A 1 
HETATM 5 C CAJ Y01 . . . K 2 129.018 111.955 162.704 1 90.37 ? CAJ Y01 909 A 1 
HETATM 6 C CAO Y01 . . . K 2 128.65 111.442 164.096 1 93.31 ? CAO Y01 909 A 1 
HETATM 7 C CBB Y01 . . . K 2 129.587 111.859 165.248 1 95.29 ? CBB Y01 909 A 1 
HETATM 8 C CAC Y01 . . . K 2 129.738 113.374 165.253 1 86.64 ? CAC Y01 909 A 1 
HETATM 9 C CBE Y01 . . . K 2 129.111 111.292 166.598 1 99.85 ? CBE Y01 909 A 1 
HETATM 10 C CAP Y01 . . . K 2 129.007 109.735 166.532 1 100.4 ? CAP Y01 909 A 1 
HETATM 11 C CAQ Y01 . . . K 2 129.814 109.18 167.709 1 100.83 ? CAQ Y01 909 A 1 
HETATM 12 C CBG Y01 . . . K 2 129.647 110.31 168.702 1 103.03 ? CBG Y01 909 A 1 
HETATM 13 C CBI Y01 . . . K 2 129.922 111.597 167.902 1 98.64 ? CBI Y01 909 A 1 
HETATM 14 C CAE Y01 . . . K 2 131.405 111.806 167.577 1 87.27 ? CAE Y01 909 A 1 
HETATM 15 C CAU Y01 . . . K 2 129.44 112.732 168.821 1 93.14 ? CAU Y01 909 A 1 
HETATM 16 C CAS Y01 . . . K 2 130.038 112.664 170.241 1 84.83 ? CAS Y01 909 A 1 
HETATM 17 C CBF Y01 . . . K 2 129.85 111.309 170.946 1 92.41 ? CBF Y01 909 A 1 
HETATM 18 C CBD Y01 . . . K 2 130.365 110.19 170.03 1 100.15 ? CBD Y01 909 A 1 
HETATM 19 C CAK Y01 . . . K 2 130.101 108.812 170.613 1 103.47 ? CAK Y01 909 A 1 
HETATM 20 C CAI Y01 . . . K 2 130.495 108.734 172.041 1 104.28 ? CAI Y01 909 A 1 
HETATM 21 C CAZ Y01 . . . K 2 130.633 109.785 172.842 1 101.77 ? CAZ Y01 909 A 1 
HETATM 22 C CAV Y01 . . . K 2 130.904 109.53 174.302 1 99.84 ? CAV Y01 909 A 1 
HETATM 23 C CBH Y01 . . . K 2 130.394 111.224 172.406 1 91.17 ? CBH Y01 909 A 1 
HETATM 24 C CAD Y01 . . . K 2 131.711 111.993 172.575 1 88.86 ? CAD Y01 909 A 1 
HETATM 25 C CAT Y01 . . . K 2 129.327 111.796 173.366 1 93.41 ? CAT Y01 909 A 1 
HETATM 26 C CAR Y01 . . . K 2 129.612 111.577 174.852 1 98.18 ? CAR Y01 909 A 1 
HETATM 27 C CBC Y01 . . . K 2 129.801 110.11 175.171 1 103.31 ? CBC Y01 909 A 1 
HETATM 28 O OAW Y01 . . . K 2 130.161 110.017 176.559 1 111.13 ? OAW Y01 909 A 1 
HETATM 29 C CAY Y01 . . . K 2 129.329 109.432 177.416 1 115.74 ? CAY Y01 909 A 1 
HETATM 30 O OAG Y01 . . . K 2 128.678 110.044 178.227 1 112.82 ? OAG Y01 909 A 1 
HETATM 31 C CAM Y01 . . . K 2 129.317 107.938 177.236 1 117.14 ? CAM Y01 909 A 1 
HETATM 32 C CAL Y01 . . . K 2 130.677 107.296 177.412 1 120.59 ? CAL Y01 909 A 1 
HETATM 33 C CAX Y01 . . . K 2 131.211 107.323 178.857 1 125.41 ? CAX Y01 909 A 1 
HETATM 34 O OAH Y01 . . . K 2 130.46 106.82 179.718 1 129.71 ? OAH Y01 909 A 1 
HETATM 35 O OAF Y01 . . . K 2 132.331 107.834 179.055 1 119.75 ? OAF Y01 909 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           35 
#