data_9DC8 # _model_server_result.job_id Iq51b7IV8ynyLaAvM8NFPQ _model_server_result.datetime_utc '2025-01-10 07:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9DC8 # _exptl.entry_id 9DC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DC8 _cell.length_a 89.586 _cell.length_b 89.586 _cell.length_c 85.905 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 9DC8 _atom_sites.fract_transf_matrix[1][1] 0.011162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011162 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 801 801 IMP IMP . C 3 VOA A 1 802 1 VOA DRG . D 3 VOA A 1 803 1 VOA DRG . E 3 VOA A 1 804 1 VOA DRG . F 4 SO4 A 1 805 1 SO4 SO4 . G 5 HOH A 1 901 180 HOH HOH . G 5 HOH A 2 902 161 HOH HOH . G 5 HOH A 3 903 73 HOH HOH . G 5 HOH A 4 904 117 HOH HOH . G 5 HOH A 5 905 137 HOH HOH . G 5 HOH A 6 906 101 HOH HOH . G 5 HOH A 7 907 76 HOH HOH . G 5 HOH A 8 908 98 HOH HOH . G 5 HOH A 9 909 112 HOH HOH . G 5 HOH A 10 910 174 HOH HOH . G 5 HOH A 11 911 139 HOH HOH . G 5 HOH A 12 912 134 HOH HOH . G 5 HOH A 13 913 191 HOH HOH . G 5 HOH A 14 914 162 HOH HOH . G 5 HOH A 15 915 86 HOH HOH . G 5 HOH A 16 916 67 HOH HOH . G 5 HOH A 17 917 92 HOH HOH . G 5 HOH A 18 918 169 HOH HOH . G 5 HOH A 19 919 171 HOH HOH . G 5 HOH A 20 920 24 HOH HOH . G 5 HOH A 21 921 164 HOH HOH . G 5 HOH A 22 922 156 HOH HOH . G 5 HOH A 23 923 130 HOH HOH . G 5 HOH A 24 924 142 HOH HOH . G 5 HOH A 25 925 34 HOH HOH . G 5 HOH A 26 926 108 HOH HOH . G 5 HOH A 27 927 146 HOH HOH . G 5 HOH A 28 928 80 HOH HOH . G 5 HOH A 29 929 69 HOH HOH . G 5 HOH A 30 930 193 HOH HOH . G 5 HOH A 31 931 39 HOH HOH . G 5 HOH A 32 932 23 HOH HOH . G 5 HOH A 33 933 127 HOH HOH . G 5 HOH A 34 934 192 HOH HOH . G 5 HOH A 35 935 93 HOH HOH . G 5 HOH A 36 936 12 HOH HOH . G 5 HOH A 37 937 143 HOH HOH . G 5 HOH A 38 938 205 HOH HOH . G 5 HOH A 39 939 26 HOH HOH . G 5 HOH A 40 940 5 HOH HOH . G 5 HOH A 41 941 45 HOH HOH . G 5 HOH A 42 942 158 HOH HOH . G 5 HOH A 43 943 7 HOH HOH . G 5 HOH A 44 944 188 HOH HOH . G 5 HOH A 45 945 33 HOH HOH . G 5 HOH A 46 946 10 HOH HOH . G 5 HOH A 47 947 15 HOH HOH . G 5 HOH A 48 948 199 HOH HOH . G 5 HOH A 49 949 47 HOH HOH . G 5 HOH A 50 950 115 HOH HOH . G 5 HOH A 51 951 123 HOH HOH . G 5 HOH A 52 952 135 HOH HOH . G 5 HOH A 53 953 18 HOH HOH . G 5 HOH A 54 954 55 HOH HOH . G 5 HOH A 55 955 138 HOH HOH . G 5 HOH A 56 956 50 HOH HOH . G 5 HOH A 57 957 28 HOH HOH . G 5 HOH A 58 958 14 HOH HOH . G 5 HOH A 59 959 49 HOH HOH . G 5 HOH A 60 960 53 HOH HOH . G 5 HOH A 61 961 51 HOH HOH . G 5 HOH A 62 962 144 HOH HOH . G 5 HOH A 63 963 88 HOH HOH . G 5 HOH A 64 964 131 HOH HOH . G 5 HOH A 65 965 32 HOH HOH . G 5 HOH A 66 966 85 HOH HOH . G 5 HOH A 67 967 84 HOH HOH . G 5 HOH A 68 968 22 HOH HOH . G 5 HOH A 69 969 72 HOH HOH . G 5 HOH A 70 970 6 HOH HOH . G 5 HOH A 71 971 91 HOH HOH . G 5 HOH A 72 972 71 HOH HOH . G 5 HOH A 73 973 178 HOH HOH . G 5 HOH A 74 974 48 HOH HOH . G 5 HOH A 75 975 16 HOH HOH . G 5 HOH A 76 976 78 HOH HOH . G 5 HOH A 77 977 8 HOH HOH . G 5 HOH A 78 978 31 HOH HOH . G 5 HOH A 79 979 122 HOH HOH . G 5 HOH A 80 980 132 HOH HOH . G 5 HOH A 81 981 97 HOH HOH . G 5 HOH A 82 982 77 HOH HOH . G 5 HOH A 83 983 3 HOH HOH . G 5 HOH A 84 984 56 HOH HOH . G 5 HOH A 85 985 89 HOH HOH . G 5 HOH A 86 986 190 HOH HOH . G 5 HOH A 87 987 68 HOH HOH . G 5 HOH A 88 988 11 HOH HOH . G 5 HOH A 89 989 17 HOH HOH . G 5 HOH A 90 990 111 HOH HOH . G 5 HOH A 91 991 57 HOH HOH . G 5 HOH A 92 992 36 HOH HOH . G 5 HOH A 93 993 41 HOH HOH . G 5 HOH A 94 994 20 HOH HOH . G 5 HOH A 95 995 75 HOH HOH . G 5 HOH A 96 996 120 HOH HOH . G 5 HOH A 97 997 177 HOH HOH . G 5 HOH A 98 998 4 HOH HOH . G 5 HOH A 99 999 94 HOH HOH . G 5 HOH A 100 1000 179 HOH HOH . G 5 HOH A 101 1001 40 HOH HOH . G 5 HOH A 102 1002 27 HOH HOH . G 5 HOH A 103 1003 149 HOH HOH . G 5 HOH A 104 1004 82 HOH HOH . G 5 HOH A 105 1005 104 HOH HOH . G 5 HOH A 106 1006 163 HOH HOH . G 5 HOH A 107 1007 165 HOH HOH . G 5 HOH A 108 1008 79 HOH HOH . G 5 HOH A 109 1009 19 HOH HOH . G 5 HOH A 110 1010 59 HOH HOH . G 5 HOH A 111 1011 81 HOH HOH . G 5 HOH A 112 1012 124 HOH HOH . G 5 HOH A 113 1013 30 HOH HOH . G 5 HOH A 114 1014 140 HOH HOH . G 5 HOH A 115 1015 60 HOH HOH . G 5 HOH A 116 1016 195 HOH HOH . G 5 HOH A 117 1017 87 HOH HOH . G 5 HOH A 118 1018 113 HOH HOH . G 5 HOH A 119 1019 74 HOH HOH . G 5 HOH A 120 1020 21 HOH HOH . G 5 HOH A 121 1021 95 HOH HOH . G 5 HOH A 122 1022 9 HOH HOH . G 5 HOH A 123 1023 2 HOH HOH . G 5 HOH A 124 1024 13 HOH HOH . G 5 HOH A 125 1025 100 HOH HOH . G 5 HOH A 126 1026 106 HOH HOH . G 5 HOH A 127 1027 172 HOH HOH . G 5 HOH A 128 1028 44 HOH HOH . G 5 HOH A 129 1029 148 HOH HOH . G 5 HOH A 130 1030 25 HOH HOH . G 5 HOH A 131 1031 125 HOH HOH . G 5 HOH A 132 1032 42 HOH HOH . G 5 HOH A 133 1033 46 HOH HOH . G 5 HOH A 134 1034 62 HOH HOH . G 5 HOH A 135 1035 61 HOH HOH . G 5 HOH A 136 1036 151 HOH HOH . G 5 HOH A 137 1037 66 HOH HOH . G 5 HOH A 138 1038 63 HOH HOH . G 5 HOH A 139 1039 38 HOH HOH . G 5 HOH A 140 1040 35 HOH HOH . G 5 HOH A 141 1041 70 HOH HOH . G 5 HOH A 142 1042 64 HOH HOH . G 5 HOH A 143 1043 65 HOH HOH . G 5 HOH A 144 1044 58 HOH HOH . G 5 HOH A 145 1045 145 HOH HOH . G 5 HOH A 146 1046 96 HOH HOH . G 5 HOH A 147 1047 126 HOH HOH . G 5 HOH A 148 1048 141 HOH HOH . G 5 HOH A 149 1049 121 HOH HOH . G 5 HOH A 150 1050 109 HOH HOH . G 5 HOH A 151 1051 116 HOH HOH . G 5 HOH A 152 1052 99 HOH HOH . G 5 HOH A 153 1053 29 HOH HOH . G 5 HOH A 154 1054 37 HOH HOH . G 5 HOH A 155 1055 207 HOH HOH . G 5 HOH A 156 1056 159 HOH HOH . G 5 HOH A 157 1057 196 HOH HOH . G 5 HOH A 158 1058 103 HOH HOH . G 5 HOH A 159 1059 150 HOH HOH . G 5 HOH A 160 1060 119 HOH HOH . G 5 HOH A 161 1061 209 HOH HOH . G 5 HOH A 162 1062 52 HOH HOH . G 5 HOH A 163 1063 197 HOH HOH . G 5 HOH A 164 1064 201 HOH HOH . G 5 HOH A 165 1065 110 HOH HOH . G 5 HOH A 166 1066 114 HOH HOH . G 5 HOH A 167 1067 206 HOH HOH . G 5 HOH A 168 1068 133 HOH HOH . G 5 HOH A 169 1069 54 HOH HOH . G 5 HOH A 170 1070 189 HOH HOH . G 5 HOH A 171 1071 194 HOH HOH . G 5 HOH A 172 1072 166 HOH HOH . G 5 HOH A 173 1073 181 HOH HOH . G 5 HOH A 174 1074 90 HOH HOH . G 5 HOH A 175 1075 187 HOH HOH . G 5 HOH A 176 1076 202 HOH HOH . G 5 HOH A 177 1077 160 HOH HOH . G 5 HOH A 178 1078 153 HOH HOH . G 5 HOH A 179 1079 204 HOH HOH . G 5 HOH A 180 1080 154 HOH HOH . G 5 HOH A 181 1081 167 HOH HOH . G 5 HOH A 182 1082 198 HOH HOH . G 5 HOH A 183 1083 128 HOH HOH . G 5 HOH A 184 1084 147 HOH HOH . G 5 HOH A 185 1085 83 HOH HOH . G 5 HOH A 186 1086 208 HOH HOH . G 5 HOH A 187 1087 183 HOH HOH . G 5 HOH A 188 1088 176 HOH HOH . G 5 HOH A 189 1089 182 HOH HOH . G 5 HOH A 190 1090 185 HOH HOH . G 5 HOH A 191 1091 107 HOH HOH . G 5 HOH A 192 1092 136 HOH HOH . G 5 HOH A 193 1093 105 HOH HOH . G 5 HOH A 194 1094 173 HOH HOH . G 5 HOH A 195 1095 102 HOH HOH . G 5 HOH A 196 1096 175 HOH HOH . G 5 HOH A 197 1097 186 HOH HOH . G 5 HOH A 198 1098 118 HOH HOH . G 5 HOH A 199 1099 170 HOH HOH . G 5 HOH A 200 1100 200 HOH HOH . G 5 HOH A 201 1101 168 HOH HOH . G 5 HOH A 202 1102 184 HOH HOH . G 5 HOH A 203 1103 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -11.355 19.745 -5.715 1 16.41 ? P IMP 801 A 1 HETATM 2 O O1P IMP . . . B 2 -12.874 19.836 -5.478 1 18.45 ? O1P IMP 801 A 1 HETATM 3 O O2P IMP . . . B 2 -10.712 18.464 -5.137 1 17.5 ? O2P IMP 801 A 1 HETATM 4 O O3P IMP . . . B 2 -11.077 19.903 -7.206 1 17.61 ? O3P IMP 801 A 1 HETATM 5 O O5' IMP . . . B 2 -10.708 21.037 -4.969 1 17.34 ? O5' IMP 801 A 1 HETATM 6 C C5' IMP . . . B 2 -11.141 22.41 -5.137 1 16.06 ? C5' IMP 801 A 1 HETATM 7 C C4' IMP . . . B 2 -10.468 23.292 -4.109 1 16.26 ? C4' IMP 801 A 1 HETATM 8 O O4' IMP . . . B 2 -9.05 23.373 -4.363 1 16.12 ? O4' IMP 801 A 1 HETATM 9 C C3' IMP . . . B 2 -10.893 24.752 -4.111 1 17.03 ? C3' IMP 801 A 1 HETATM 10 O O3' IMP . . . B 2 -12.187 24.946 -3.538 1 16.67 ? O3' IMP 801 A 1 HETATM 11 C C2' IMP . . . B 2 -9.742 25.411 -3.335 1 17.08 ? C2' IMP 801 A 1 HETATM 12 O O2' IMP . . . B 2 -9.867 25.283 -1.919 1 16.56 ? O2' IMP 801 A 1 HETATM 13 C C1' IMP . . . B 2 -8.541 24.568 -3.784 1 16.01 ? C1' IMP 801 A 1 HETATM 14 N N9 IMP . . . B 2 -7.643 25.229 -4.761 1 16.18 ? N9 IMP 801 A 1 HETATM 15 C C8 IMP . . . B 2 -7.984 26.033 -5.818 1 17.11 ? C8 IMP 801 A 1 HETATM 16 N N7 IMP . . . B 2 -6.946 26.397 -6.555 1 16.87 ? N7 IMP 801 A 1 HETATM 17 C C5 IMP . . . B 2 -5.86 25.787 -5.943 1 17.1 ? C5 IMP 801 A 1 HETATM 18 C C6 IMP . . . B 2 -4.437 25.759 -6.295 1 19.11 ? C6 IMP 801 A 1 HETATM 19 O O6 IMP . . . B 2 -3.892 26.257 -7.285 1 18.37 ? O6 IMP 801 A 1 HETATM 20 N N1 IMP . . . B 2 -3.703 25.005 -5.376 1 19.26 ? N1 IMP 801 A 1 HETATM 21 C C2 IMP . . . B 2 -4.226 24.362 -4.307 1 19.6 ? C2 IMP 801 A 1 HETATM 22 N N3 IMP . . . B 2 -5.508 24.346 -3.977 1 18.27 ? N3 IMP 801 A 1 HETATM 23 C C4 IMP . . . B 2 -6.275 25.077 -4.828 1 17.9 ? C4 IMP 801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #