data_9DDU # _model_server_result.job_id EhOeJanoj0rXMF8bTBv4jQ _model_server_result.datetime_utc '2025-02-22 14:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ddu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 9DDU # _exptl.entry_id 9DDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.456 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 86.01 _cell.angle_beta 86.51 _cell.angle_gamma 65.28 _cell.entry_id 9DDU _cell.length_a 31.021 _cell.length_b 35.939 _cell.length_c 64.043 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 B LYS 108 1_555 C C23 ZFJ . B ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 doub covale ? covale2 B NZ LYS 108 A LYS 108 1_555 J C23 ZFJ . A ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 doub # _chem_comp.formula 'C22 H27 N' _chem_comp.formula_weight 305.456 _chem_comp.id ZFJ _chem_comp.mon_nstd_flag . _chem_comp.name (4aP)-N,N-diethyl-9,9-dimethyl-7-[(1E)-prop-1-en-1-yl]-9H-fluoren-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 ZFJ sing 379 n n C21 C22 ZFJ doub 380 e n C21 C12 ZFJ sing 381 n n C11 C12 ZFJ doub 382 n y C11 C10 ZFJ sing 383 n y C12 C13 ZFJ sing 384 n y C10 C07 ZFJ doub 385 n y C13 C08 ZFJ doub 386 n y C07 C08 ZFJ sing 387 n y C07 C06 ZFJ sing 388 n n C08 C09 ZFJ sing 389 n n C06 C05 ZFJ doub 390 n y C06 C01 ZFJ sing 391 n y C05 C04 ZFJ sing 392 n y C14 C09 ZFJ sing 393 n n C09 C01 ZFJ sing 394 n n C09 C15 ZFJ sing 395 n n C01 C02 ZFJ doub 396 n y C04 C03 ZFJ doub 397 n y C02 C03 ZFJ sing 398 n y C03 N16 ZFJ sing 399 n n C18 C17 ZFJ sing 400 n n N16 C17 ZFJ sing 401 n n N16 C19 ZFJ sing 402 n n C20 C19 ZFJ sing 403 n n C10 H1 ZFJ sing 404 n n C13 H2 ZFJ sing 405 n n C15 H3 ZFJ sing 406 n n C15 H4 ZFJ sing 407 n n C15 H5 ZFJ sing 408 n n C17 H6 ZFJ sing 409 n n C17 H7 ZFJ sing 410 n n C20 H8 ZFJ sing 411 n n C20 H9 ZFJ sing 412 n n C20 H10 ZFJ sing 413 n n C21 H11 ZFJ sing 414 n n C22 H12 ZFJ sing 415 n n C02 H13 ZFJ sing 416 n n C04 H14 ZFJ sing 417 n n C05 H15 ZFJ sing 418 n n C11 H16 ZFJ sing 419 n n C14 H17 ZFJ sing 420 n n C14 H18 ZFJ sing 421 n n C14 H19 ZFJ sing 422 n n C18 H20 ZFJ sing 423 n n C18 H21 ZFJ sing 424 n n C18 H22 ZFJ sing 425 n n C19 H23 ZFJ sing 426 n n C19 H24 ZFJ sing 427 n n C23 H25 ZFJ sing 428 n n C23 H26 ZFJ sing 429 n n C23 H27 ZFJ sing 430 n n # _atom_sites.entry_id 9DDU _atom_sites.fract_transf_matrix[1][1] 0.032236 _atom_sites.fract_transf_matrix[1][2] -0.014841 _atom_sites.fract_transf_matrix[1][3] -0.001245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030632 _atom_sites.fract_transf_matrix[2][3] -0.001493 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZFJ B 1 201 201 ZFJ LIG . D 3 ACY B 1 202 301 ACY ACT . E 4 GOL B 1 203 401 GOL GOL . F 4 GOL B 1 204 501 GOL GOL . G 4 GOL B 1 205 601 GOL GOL . H 4 GOL B 1 206 701 GOL GOL . I 4 GOL B 1 207 801 GOL GOL . J 2 ZFJ A 1 201 211 ZFJ LIG . K 4 GOL A 1 202 311 GOL GOL . L 4 GOL A 1 203 411 GOL GOL . M 3 ACY A 1 204 511 ACY ACT . N 3 ACY A 1 205 611 ACY ACT . O 4 GOL A 1 206 711 GOL GOL . P 5 HOH B 1 301 46 HOH HOH . P 5 HOH B 2 302 39 HOH HOH . P 5 HOH B 3 303 82 HOH HOH . P 5 HOH B 4 304 2 HOH HOH . P 5 HOH B 5 305 21 HOH HOH . P 5 HOH B 6 306 68 HOH HOH . P 5 HOH B 7 307 49 HOH HOH . P 5 HOH B 8 308 40 HOH HOH . P 5 HOH B 9 309 19 HOH HOH . P 5 HOH B 10 310 61 HOH HOH . P 5 HOH B 11 311 67 HOH HOH . P 5 HOH B 12 312 8 HOH HOH . P 5 HOH B 13 313 69 HOH HOH . P 5 HOH B 14 314 117 HOH HOH . P 5 HOH B 15 315 48 HOH HOH . P 5 HOH B 16 316 54 HOH HOH . P 5 HOH B 17 317 15 HOH HOH . P 5 HOH B 18 318 123 HOH HOH . P 5 HOH B 19 319 11 HOH HOH . P 5 HOH B 20 320 27 HOH HOH . P 5 HOH B 21 321 52 HOH HOH . P 5 HOH B 22 322 10 HOH HOH . P 5 HOH B 23 323 65 HOH HOH . P 5 HOH B 24 324 111 HOH HOH . P 5 HOH B 25 325 5 HOH HOH . P 5 HOH B 26 326 85 HOH HOH . P 5 HOH B 27 327 74 HOH HOH . P 5 HOH B 28 328 32 HOH HOH . P 5 HOH B 29 329 4 HOH HOH . P 5 HOH B 30 330 59 HOH HOH . P 5 HOH B 31 331 26 HOH HOH . P 5 HOH B 32 332 16 HOH HOH . P 5 HOH B 33 333 107 HOH HOH . P 5 HOH B 34 334 102 HOH HOH . P 5 HOH B 35 335 106 HOH HOH . P 5 HOH B 36 336 7 HOH HOH . P 5 HOH B 37 337 124 HOH HOH . P 5 HOH B 38 338 31 HOH HOH . P 5 HOH B 39 339 127 HOH HOH . P 5 HOH B 40 340 90 HOH HOH . P 5 HOH B 41 341 33 HOH HOH . P 5 HOH B 42 342 70 HOH HOH . P 5 HOH B 43 343 128 HOH HOH . P 5 HOH B 44 344 24 HOH HOH . P 5 HOH B 45 345 66 HOH HOH . P 5 HOH B 46 346 13 HOH HOH . P 5 HOH B 47 347 53 HOH HOH . P 5 HOH B 48 348 105 HOH HOH . P 5 HOH B 49 349 64 HOH HOH . P 5 HOH B 50 350 45 HOH HOH . P 5 HOH B 51 351 126 HOH HOH . P 5 HOH B 52 352 22 HOH HOH . P 5 HOH B 53 353 94 HOH HOH . P 5 HOH B 54 354 114 HOH HOH . P 5 HOH B 55 355 75 HOH HOH . P 5 HOH B 56 356 41 HOH HOH . P 5 HOH B 57 357 37 HOH HOH . Q 5 HOH A 1 301 89 HOH HOH . Q 5 HOH A 2 302 28 HOH HOH . Q 5 HOH A 3 303 36 HOH HOH . Q 5 HOH A 4 304 101 HOH HOH . Q 5 HOH A 5 305 71 HOH HOH . Q 5 HOH A 6 306 83 HOH HOH . Q 5 HOH A 7 307 80 HOH HOH . Q 5 HOH A 8 308 12 HOH HOH . Q 5 HOH A 9 309 18 HOH HOH . Q 5 HOH A 10 310 1 HOH HOH . Q 5 HOH A 11 311 103 HOH HOH . Q 5 HOH A 12 312 14 HOH HOH . Q 5 HOH A 13 313 35 HOH HOH . Q 5 HOH A 14 314 81 HOH HOH . Q 5 HOH A 15 315 9 HOH HOH . Q 5 HOH A 16 316 17 HOH HOH . Q 5 HOH A 17 317 47 HOH HOH . Q 5 HOH A 18 318 42 HOH HOH . Q 5 HOH A 19 319 38 HOH HOH . Q 5 HOH A 20 320 63 HOH HOH . Q 5 HOH A 21 321 56 HOH HOH . Q 5 HOH A 22 322 73 HOH HOH . Q 5 HOH A 23 323 3 HOH HOH . Q 5 HOH A 24 324 84 HOH HOH . Q 5 HOH A 25 325 57 HOH HOH . Q 5 HOH A 26 326 62 HOH HOH . Q 5 HOH A 27 327 58 HOH HOH . Q 5 HOH A 28 328 6 HOH HOH . Q 5 HOH A 29 329 20 HOH HOH . Q 5 HOH A 30 330 93 HOH HOH . Q 5 HOH A 31 331 23 HOH HOH . Q 5 HOH A 32 332 29 HOH HOH . Q 5 HOH A 33 333 25 HOH HOH . Q 5 HOH A 34 334 60 HOH HOH . Q 5 HOH A 35 335 30 HOH HOH . Q 5 HOH A 36 336 34 HOH HOH . Q 5 HOH A 37 337 50 HOH HOH . Q 5 HOH A 38 338 77 HOH HOH . Q 5 HOH A 39 339 79 HOH HOH . Q 5 HOH A 40 340 130 HOH HOH . Q 5 HOH A 41 341 86 HOH HOH . Q 5 HOH A 42 342 99 HOH HOH . Q 5 HOH A 43 343 104 HOH HOH . Q 5 HOH A 44 344 44 HOH HOH . Q 5 HOH A 45 345 129 HOH HOH . Q 5 HOH A 46 346 115 HOH HOH . Q 5 HOH A 47 347 118 HOH HOH . Q 5 HOH A 48 348 76 HOH HOH . Q 5 HOH A 49 349 55 HOH HOH . Q 5 HOH A 50 350 108 HOH HOH . Q 5 HOH A 51 351 43 HOH HOH . Q 5 HOH A 52 352 72 HOH HOH . Q 5 HOH A 53 353 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ZFJ . . . J 2 -3.691 0.588 0.37 1 52.03 ? C10 ZFJ 201 A 1 HETATM 2 C C13 ZFJ . . . J 2 -1.048 -0.474 1.468 1 38.9 ? C13 ZFJ 201 A 1 HETATM 3 C C15 ZFJ . . . J 2 -1.007 1.295 4.312 1 37.9 ? C15 ZFJ 201 A 1 HETATM 4 C C17 ZFJ . . . J 2 -6.34 3.768 7.217 1 58.13 ? C17 ZFJ 201 A 1 HETATM 5 C C20 ZFJ . . . J 2 -7.13 0.366 7.67 1 68.9 ? C20 ZFJ 201 A 1 HETATM 6 C C21 ZFJ . . . J 2 -0.291 -1.097 -0.996 1 26.28 ? C21 ZFJ 201 A 1 HETATM 7 C C22 ZFJ . . . J 2 0.664 -1.888 -0.577 1 30.3 ? C22 ZFJ 201 A 1 HETATM 8 C C01 ZFJ . . . J 2 -3.449 0.935 4.32 1 46.5 ? C01 ZFJ 201 A 1 HETATM 9 C C02 ZFJ . . . J 2 -4.013 1.353 5.678 1 54.39 ? C02 ZFJ 201 A 1 HETATM 10 C C03 ZFJ . . . J 2 -5.404 1.98 5.756 1 57.9 ? C03 ZFJ 201 A 1 HETATM 11 C C04 ZFJ . . . J 2 -6.226 2.2 4.468 1 57.44 ? C04 ZFJ 201 A 1 HETATM 12 C C05 ZFJ . . . J 2 -5.645 1.781 3.113 1 52.13 ? C05 ZFJ 201 A 1 HETATM 13 C C06 ZFJ . . . J 2 -4.246 1.148 3.057 1 55.28 ? C06 ZFJ 201 A 1 HETATM 14 C C07 ZFJ . . . J 2 -3.404 0.633 1.872 1 52.2 ? C07 ZFJ 201 A 1 HETATM 15 C C08 ZFJ . . . J 2 -2.101 0.112 2.413 1 46.87 ? C08 ZFJ 201 A 1 HETATM 16 C C09 ZFJ . . . J 2 -2.11 0.306 3.934 1 54.55 ? C09 ZFJ 201 A 1 HETATM 17 C C11 ZFJ . . . J 2 -2.648 0.009 -0.587 1 44.19 ? C11 ZFJ 201 A 1 HETATM 18 C C12 ZFJ . . . J 2 -1.318 -0.529 -0.035 1 39.91 ? C12 ZFJ 201 A 1 HETATM 19 C C14 ZFJ . . . J 2 -1.906 -1.019 4.668 1 48.6 ? C14 ZFJ 201 A 1 HETATM 20 C C18 ZFJ . . . J 2 -7.855 3.856 7.372 1 63.28 ? C18 ZFJ 201 A 1 HETATM 21 C C19 ZFJ . . . J 2 -6.108 1.417 8.097 1 64.96 ? C19 ZFJ 201 A 1 HETATM 22 C C23 ZFJ . . . J 2 1.499 -2.684 -1.58 1 29.87 ? C23 ZFJ 201 A 1 HETATM 23 N N16 ZFJ . . . J 2 -5.95 2.385 7.032 1 61.76 ? N16 ZFJ 201 A 1 HETATM 24 H H1 ZFJ . . . J 2 -4.5 0.908 0.041 1 62.46 ? H1 ZFJ 201 A 1 HETATM 25 H H2 ZFJ . . . J 2 -0.242 -0.79 1.807 1 46.71 ? H2 ZFJ 201 A 1 HETATM 26 H H3 ZFJ . . . J 2 -0.14 0.893 4.143 1 45.5 ? H3 ZFJ 201 A 1 HETATM 27 H H4 ZFJ . . . J 2 -1.081 1.518 5.253 1 45.5 ? H4 ZFJ 201 A 1 HETATM 28 H H5 ZFJ . . . J 2 -1.098 2.101 3.779 1 45.5 ? H5 ZFJ 201 A 1 HETATM 29 H H6 ZFJ . . . J 2 -5.913 4.12 8.014 1 69.79 ? H6 ZFJ 201 A 1 HETATM 30 H H7 ZFJ . . . J 2 -6.063 4.287 6.446 1 69.79 ? H7 ZFJ 201 A 1 HETATM 31 H H8 ZFJ . . . J 2 -7.585 0.021 8.454 1 82.71 ? H8 ZFJ 201 A 1 HETATM 32 H H9 ZFJ . . . J 2 -7.778 0.769 7.071 1 82.71 ? H9 ZFJ 201 A 1 HETATM 33 H H10 ZFJ . . . J 2 -6.676 -0.36 7.214 1 82.71 ? H10 ZFJ 201 A 1 HETATM 34 H H11 ZFJ . . . J 2 -0.34 -0.879 -1.898 1 31.56 ? H11 ZFJ 201 A 1 HETATM 35 H H12 ZFJ . . . J 2 0.836 -1.965 0.334 1 36.38 ? H12 ZFJ 201 A 1 HETATM 36 H H13 ZFJ . . . J 2 -3.515 1.222 6.452 1 65.29 ? H13 ZFJ 201 A 1 HETATM 37 H H14 ZFJ . . . J 2 -7.071 2.585 4.514 1 68.95 ? H14 ZFJ 201 A 1 HETATM 38 H H15 ZFJ . . . J 2 -6.134 1.909 2.333 1 62.59 ? H15 ZFJ 201 A 1 HETATM 39 H H16 ZFJ . . . J 2 -2.821 -0.025 -1.5 1 53.06 ? H16 ZFJ 201 A 1 HETATM 40 H H17 ZFJ . . . J 2 -2.77 -1.407 4.881 1 58.34 ? H17 ZFJ 201 A 1 HETATM 41 H H18 ZFJ . . . J 2 -1.412 -0.863 5.488 1 58.34 ? H18 ZFJ 201 A 1 HETATM 42 H H19 ZFJ . . . J 2 -1.408 -1.629 4.102 1 58.34 ? H19 ZFJ 201 A 1 HETATM 43 H H20 ZFJ . . . J 2 -8.277 3.183 6.817 1 75.96 ? H20 ZFJ 201 A 1 HETATM 44 H H21 ZFJ . . . J 2 -8.095 3.706 8.3 1 75.96 ? H21 ZFJ 201 A 1 HETATM 45 H H22 ZFJ . . . J 2 -8.158 4.737 7.099 1 75.96 ? H22 ZFJ 201 A 1 HETATM 46 H H23 ZFJ . . . J 2 -5.256 0.988 8.275 1 77.98 ? H23 ZFJ 201 A 1 HETATM 47 H H24 ZFJ . . . J 2 -6.419 1.865 8.899 1 77.98 ? H24 ZFJ 201 A 1 HETATM 48 H H27 ZFJ . . . J 2 1.207 -2.775 -2.458 1 35.86 ? H27 ZFJ 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #