data_9DDU
#
_model_server_result.job_id            '_XZgYSrEMY-gOShQkf77XA' 
_model_server_result.datetime_utc      '2025-02-22 14:46:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ddu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":206}' 
#
_entry.id    9DDU 
#
_exptl.entry_id    9DDU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.01 
_cell.angle_beta          86.51 
_cell.angle_gamma         65.28 
_cell.entry_id            9DDU 
_cell.length_a            31.021 
_cell.length_b            35.939 
_cell.length_c            64.043 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DDU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 K N N 
? 4 L N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 108 B LYS 108 1_555 C C23 ZFJ . B ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 doub 
covale ? covale2 B NZ LYS 108 A LYS 108 1_555 J C23 ZFJ . A ZFJ 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 doub 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     9DDU 
_atom_sites.fract_transf_matrix[1][1]    0.032236 
_atom_sites.fract_transf_matrix[1][2]    -0.014841 
_atom_sites.fract_transf_matrix[1][3]    -0.001245 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030632 
_atom_sites.fract_transf_matrix[2][3]    -0.001493 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015662 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZFJ B 1 201 201 ZFJ LIG . 
D 3 ACY B 1 202 301 ACY ACT . 
E 4 GOL B 1 203 401 GOL GOL . 
F 4 GOL B 1 204 501 GOL GOL . 
G 4 GOL B 1 205 601 GOL GOL . 
H 4 GOL B 1 206 701 GOL GOL . 
I 4 GOL B 1 207 801 GOL GOL . 
J 2 ZFJ A 1 201 211 ZFJ LIG . 
K 4 GOL A 1 202 311 GOL GOL . 
L 4 GOL A 1 203 411 GOL GOL . 
M 3 ACY A 1 204 511 ACY ACT . 
N 3 ACY A 1 205 611 ACY ACT . 
O 4 GOL A 1 206 711 GOL GOL . 
P 5 HOH B 1 301 46 HOH HOH . 
P 5 HOH B 2 302 39 HOH HOH . 
P 5 HOH B 3 303 82 HOH HOH . 
P 5 HOH B 4 304 2 HOH HOH . 
P 5 HOH B 5 305 21 HOH HOH . 
P 5 HOH B 6 306 68 HOH HOH . 
P 5 HOH B 7 307 49 HOH HOH . 
P 5 HOH B 8 308 40 HOH HOH . 
P 5 HOH B 9 309 19 HOH HOH . 
P 5 HOH B 10 310 61 HOH HOH . 
P 5 HOH B 11 311 67 HOH HOH . 
P 5 HOH B 12 312 8 HOH HOH . 
P 5 HOH B 13 313 69 HOH HOH . 
P 5 HOH B 14 314 117 HOH HOH . 
P 5 HOH B 15 315 48 HOH HOH . 
P 5 HOH B 16 316 54 HOH HOH . 
P 5 HOH B 17 317 15 HOH HOH . 
P 5 HOH B 18 318 123 HOH HOH . 
P 5 HOH B 19 319 11 HOH HOH . 
P 5 HOH B 20 320 27 HOH HOH . 
P 5 HOH B 21 321 52 HOH HOH . 
P 5 HOH B 22 322 10 HOH HOH . 
P 5 HOH B 23 323 65 HOH HOH . 
P 5 HOH B 24 324 111 HOH HOH . 
P 5 HOH B 25 325 5 HOH HOH . 
P 5 HOH B 26 326 85 HOH HOH . 
P 5 HOH B 27 327 74 HOH HOH . 
P 5 HOH B 28 328 32 HOH HOH . 
P 5 HOH B 29 329 4 HOH HOH . 
P 5 HOH B 30 330 59 HOH HOH . 
P 5 HOH B 31 331 26 HOH HOH . 
P 5 HOH B 32 332 16 HOH HOH . 
P 5 HOH B 33 333 107 HOH HOH . 
P 5 HOH B 34 334 102 HOH HOH . 
P 5 HOH B 35 335 106 HOH HOH . 
P 5 HOH B 36 336 7 HOH HOH . 
P 5 HOH B 37 337 124 HOH HOH . 
P 5 HOH B 38 338 31 HOH HOH . 
P 5 HOH B 39 339 127 HOH HOH . 
P 5 HOH B 40 340 90 HOH HOH . 
P 5 HOH B 41 341 33 HOH HOH . 
P 5 HOH B 42 342 70 HOH HOH . 
P 5 HOH B 43 343 128 HOH HOH . 
P 5 HOH B 44 344 24 HOH HOH . 
P 5 HOH B 45 345 66 HOH HOH . 
P 5 HOH B 46 346 13 HOH HOH . 
P 5 HOH B 47 347 53 HOH HOH . 
P 5 HOH B 48 348 105 HOH HOH . 
P 5 HOH B 49 349 64 HOH HOH . 
P 5 HOH B 50 350 45 HOH HOH . 
P 5 HOH B 51 351 126 HOH HOH . 
P 5 HOH B 52 352 22 HOH HOH . 
P 5 HOH B 53 353 94 HOH HOH . 
P 5 HOH B 54 354 114 HOH HOH . 
P 5 HOH B 55 355 75 HOH HOH . 
P 5 HOH B 56 356 41 HOH HOH . 
P 5 HOH B 57 357 37 HOH HOH . 
Q 5 HOH A 1 301 89 HOH HOH . 
Q 5 HOH A 2 302 28 HOH HOH . 
Q 5 HOH A 3 303 36 HOH HOH . 
Q 5 HOH A 4 304 101 HOH HOH . 
Q 5 HOH A 5 305 71 HOH HOH . 
Q 5 HOH A 6 306 83 HOH HOH . 
Q 5 HOH A 7 307 80 HOH HOH . 
Q 5 HOH A 8 308 12 HOH HOH . 
Q 5 HOH A 9 309 18 HOH HOH . 
Q 5 HOH A 10 310 1 HOH HOH . 
Q 5 HOH A 11 311 103 HOH HOH . 
Q 5 HOH A 12 312 14 HOH HOH . 
Q 5 HOH A 13 313 35 HOH HOH . 
Q 5 HOH A 14 314 81 HOH HOH . 
Q 5 HOH A 15 315 9 HOH HOH . 
Q 5 HOH A 16 316 17 HOH HOH . 
Q 5 HOH A 17 317 47 HOH HOH . 
Q 5 HOH A 18 318 42 HOH HOH . 
Q 5 HOH A 19 319 38 HOH HOH . 
Q 5 HOH A 20 320 63 HOH HOH . 
Q 5 HOH A 21 321 56 HOH HOH . 
Q 5 HOH A 22 322 73 HOH HOH . 
Q 5 HOH A 23 323 3 HOH HOH . 
Q 5 HOH A 24 324 84 HOH HOH . 
Q 5 HOH A 25 325 57 HOH HOH . 
Q 5 HOH A 26 326 62 HOH HOH . 
Q 5 HOH A 27 327 58 HOH HOH . 
Q 5 HOH A 28 328 6 HOH HOH . 
Q 5 HOH A 29 329 20 HOH HOH . 
Q 5 HOH A 30 330 93 HOH HOH . 
Q 5 HOH A 31 331 23 HOH HOH . 
Q 5 HOH A 32 332 29 HOH HOH . 
Q 5 HOH A 33 333 25 HOH HOH . 
Q 5 HOH A 34 334 60 HOH HOH . 
Q 5 HOH A 35 335 30 HOH HOH . 
Q 5 HOH A 36 336 34 HOH HOH . 
Q 5 HOH A 37 337 50 HOH HOH . 
Q 5 HOH A 38 338 77 HOH HOH . 
Q 5 HOH A 39 339 79 HOH HOH . 
Q 5 HOH A 40 340 130 HOH HOH . 
Q 5 HOH A 41 341 86 HOH HOH . 
Q 5 HOH A 42 342 99 HOH HOH . 
Q 5 HOH A 43 343 104 HOH HOH . 
Q 5 HOH A 44 344 44 HOH HOH . 
Q 5 HOH A 45 345 129 HOH HOH . 
Q 5 HOH A 46 346 115 HOH HOH . 
Q 5 HOH A 47 347 118 HOH HOH . 
Q 5 HOH A 48 348 76 HOH HOH . 
Q 5 HOH A 49 349 55 HOH HOH . 
Q 5 HOH A 50 350 108 HOH HOH . 
Q 5 HOH A 51 351 43 HOH HOH . 
Q 5 HOH A 52 352 72 HOH HOH . 
Q 5 HOH A 53 353 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . O 4 -18.818 6.827 -4.213 1 38.05 ? C1 GOL 206 A 1 
HETATM 2 O O1 GOL . . . O 4 -19.165 8.188 -3.94 1 47.16 ? O1 GOL 206 A 1 
HETATM 3 C C2 GOL . . . O 4 -17.715 6.773 -5.265 1 38.77 ? C2 GOL 206 A 1 
HETATM 4 O O2 GOL . . . O 4 -18.233 6.285 -6.503 1 44.36 ? O2 GOL 206 A 1 
HETATM 5 C C3 GOL . . . O 4 -16.576 5.875 -4.816 1 36.26 ? C3 GOL 206 A 1 
HETATM 6 O O3 GOL . . . O 4 -17.022 4.931 -3.846 1 37.61 ? O3 GOL 206 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#