data_9DEU # _model_server_result.job_id QkKJ0Mkdzuswkt6sFx_htw _model_server_result.datetime_utc '2025-01-22 14:58:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9deu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 9DEU # _exptl.entry_id 9DEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DEU _cell.length_a 53.647 _cell.length_b 105.194 _cell.length_c 73.792 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 9 A CYS 9 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A SG CYS 10 A CYS 10 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 A OD2 ASP 13 A ASP 13 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc4 A SG CYS 87 A CYS 87 1_555 C FE2 SF4 . A SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A SG CYS 90 A CYS 90 1_555 C FE3 SF4 . A SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A SG CYS 169 A CYS 169 1_555 C FE1 SF4 . A SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc7 A SG CYS 171 A CYS 171 1_555 C FE4 SF4 . A SF4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 350 n n FE1 S3 SF4 sing 351 n n FE1 S4 SF4 sing 352 n n FE2 S1 SF4 sing 353 n n FE2 S3 SF4 sing 354 n n FE2 S4 SF4 sing 355 n n FE3 S1 SF4 sing 356 n n FE3 S2 SF4 sing 357 n n FE3 S4 SF4 sing 358 n n FE4 S1 SF4 sing 359 n n FE4 S2 SF4 sing 360 n n FE4 S3 SF4 sing 361 n n # _atom_sites.entry_id 9DEU _atom_sites.fract_transf_matrix[1][1] 0.01864 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 56B A 1 201 201 56B 56B . C 3 SF4 A 1 202 501 SF4 SF4 . D 4 CL A 1 203 503 CL CL . E 5 ZN A 1 204 1 ZN ZN . F 6 HOH A 1 301 76 HOH HOH . F 6 HOH A 2 302 53 HOH HOH . F 6 HOH A 3 303 34 HOH HOH . F 6 HOH A 4 304 72 HOH HOH . F 6 HOH A 5 305 19 HOH HOH . F 6 HOH A 6 306 39 HOH HOH . F 6 HOH A 7 307 33 HOH HOH . F 6 HOH A 8 308 61 HOH HOH . F 6 HOH A 9 309 70 HOH HOH . F 6 HOH A 10 310 30 HOH HOH . F 6 HOH A 11 311 24 HOH HOH . F 6 HOH A 12 312 3 HOH HOH . F 6 HOH A 13 313 23 HOH HOH . F 6 HOH A 14 314 28 HOH HOH . F 6 HOH A 15 315 4 HOH HOH . F 6 HOH A 16 316 44 HOH HOH . F 6 HOH A 17 317 8 HOH HOH . F 6 HOH A 18 318 12 HOH HOH . F 6 HOH A 19 319 15 HOH HOH . F 6 HOH A 20 320 46 HOH HOH . F 6 HOH A 21 321 5 HOH HOH . F 6 HOH A 22 322 2 HOH HOH . F 6 HOH A 23 323 1 HOH HOH . F 6 HOH A 24 324 73 HOH HOH . F 6 HOH A 25 325 11 HOH HOH . F 6 HOH A 26 326 16 HOH HOH . F 6 HOH A 27 327 18 HOH HOH . F 6 HOH A 28 328 7 HOH HOH . F 6 HOH A 29 329 10 HOH HOH . F 6 HOH A 30 330 9 HOH HOH . F 6 HOH A 31 331 37 HOH HOH . F 6 HOH A 32 332 69 HOH HOH . F 6 HOH A 33 333 35 HOH HOH . F 6 HOH A 34 334 20 HOH HOH . F 6 HOH A 35 335 17 HOH HOH . F 6 HOH A 36 336 38 HOH HOH . F 6 HOH A 37 337 29 HOH HOH . F 6 HOH A 38 338 55 HOH HOH . F 6 HOH A 39 339 22 HOH HOH . F 6 HOH A 40 340 31 HOH HOH . F 6 HOH A 41 341 42 HOH HOH . F 6 HOH A 42 342 6 HOH HOH . F 6 HOH A 43 343 49 HOH HOH . F 6 HOH A 44 344 21 HOH HOH . F 6 HOH A 45 345 13 HOH HOH . F 6 HOH A 46 346 57 HOH HOH . F 6 HOH A 47 347 75 HOH HOH . F 6 HOH A 48 348 65 HOH HOH . F 6 HOH A 49 349 36 HOH HOH . F 6 HOH A 50 350 41 HOH HOH . F 6 HOH A 51 351 63 HOH HOH . F 6 HOH A 52 352 40 HOH HOH . F 6 HOH A 53 353 48 HOH HOH . F 6 HOH A 54 354 32 HOH HOH . F 6 HOH A 55 355 43 HOH HOH . F 6 HOH A 56 356 67 HOH HOH . F 6 HOH A 57 357 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . C 3 -7.558 -11.684 2.095 1 144.16 ? FE1 SF4 202 A 1 HETATM 2 FE FE2 SF4 . . . C 3 -4.88 -11.916 2.694 1 113.25 ? FE2 SF4 202 A 1 HETATM 3 FE FE3 SF4 . . . C 3 -6.707 -11.401 4.707 1 95.29 ? FE3 SF4 202 A 1 HETATM 4 FE FE4 SF4 . . . C 3 -6.135 -9.445 2.844 1 114.53 ? FE4 SF4 202 A 1 HETATM 5 S S1 SF4 . . . C 3 -4.695 -10.362 4.376 1 84.59 ? S1 SF4 202 A 1 HETATM 6 S S2 SF4 . . . C 3 -8.209 -10.061 3.593 1 74.73 ? S2 SF4 202 A 1 HETATM 7 S S3 SF4 . . . C 3 -5.812 -10.731 0.967 1 106.76 ? S3 SF4 202 A 1 HETATM 8 S S4 SF4 . . . C 3 -6.57 -13.291 3.403 1 80.66 ? S4 SF4 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #