data_9DFU
#
_model_server_result.job_id            D5KLH2x8Bm4rdFReCwtOLA 
_model_server_result.datetime_utc      '2025-02-23 09:10:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dfu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    9DFU 
#
_exptl.entry_id    9DFU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          3 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DFU 
_cell.length_a            37.137 
_cell.length_b            55.959 
_cell.length_c            152.81 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DFU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 38 A CYS 45 1_555 C FE4 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc2 A SG CYS 42 A CYS 49 1_555 C FE1 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc3 A SG CYS 45 A CYS 52 1_555 C FE3 SF4 . A SF4 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc4 C FE2 SF4 . A SF4 402 1_555 D N SAM . A SAM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc5 C FE2 SF4 . A SF4 402 1_555 D OXT SAM . A SAM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 387 n n 
FE1 S3 SF4 sing 388 n n 
FE1 S4 SF4 sing 389 n n 
FE2 S1 SF4 sing 390 n n 
FE2 S3 SF4 sing 391 n n 
FE2 S4 SF4 sing 392 n n 
FE3 S1 SF4 sing 393 n n 
FE3 S2 SF4 sing 394 n n 
FE3 S4 SF4 sing 395 n n 
FE4 S1 SF4 sing 396 n n 
FE4 S2 SF4 sing 397 n n 
FE4 S3 SF4 sing 398 n n 
#
_atom_sites.entry_id                     9DFU 
_atom_sites.fract_transf_matrix[1][1]    0.026927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01787 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CTP A 1 401 401 CTP CTP . 
C 3 SF4 A 1 402 402 SF4 SF4 . 
D 4 SAM A 1 403 403 SAM SAM . 
E 5 CL A 1 404 1 CL CL . 
F 6 HOH A 1 501 91 HOH HOH . 
F 6 HOH A 2 502 131 HOH HOH . 
F 6 HOH A 3 503 12 HOH HOH . 
F 6 HOH A 4 504 9 HOH HOH . 
F 6 HOH A 5 505 77 HOH HOH . 
F 6 HOH A 6 506 52 HOH HOH . 
F 6 HOH A 7 507 3 HOH HOH . 
F 6 HOH A 8 508 85 HOH HOH . 
F 6 HOH A 9 509 59 HOH HOH . 
F 6 HOH A 10 510 61 HOH HOH . 
F 6 HOH A 11 511 4 HOH HOH . 
F 6 HOH A 12 512 68 HOH HOH . 
F 6 HOH A 13 513 48 HOH HOH . 
F 6 HOH A 14 514 18 HOH HOH . 
F 6 HOH A 15 515 32 HOH HOH . 
F 6 HOH A 16 516 126 HOH HOH . 
F 6 HOH A 17 517 54 HOH HOH . 
F 6 HOH A 18 518 117 HOH HOH . 
F 6 HOH A 19 519 5 HOH HOH . 
F 6 HOH A 20 520 13 HOH HOH . 
F 6 HOH A 21 521 1 HOH HOH . 
F 6 HOH A 22 522 64 HOH HOH . 
F 6 HOH A 23 523 60 HOH HOH . 
F 6 HOH A 24 524 31 HOH HOH . 
F 6 HOH A 25 525 10 HOH HOH . 
F 6 HOH A 26 526 19 HOH HOH . 
F 6 HOH A 27 527 58 HOH HOH . 
F 6 HOH A 28 528 41 HOH HOH . 
F 6 HOH A 29 529 35 HOH HOH . 
F 6 HOH A 30 530 25 HOH HOH . 
F 6 HOH A 31 531 42 HOH HOH . 
F 6 HOH A 32 532 6 HOH HOH . 
F 6 HOH A 33 533 8 HOH HOH . 
F 6 HOH A 34 534 11 HOH HOH . 
F 6 HOH A 35 535 2 HOH HOH . 
F 6 HOH A 36 536 27 HOH HOH . 
F 6 HOH A 37 537 39 HOH HOH . 
F 6 HOH A 38 538 34 HOH HOH . 
F 6 HOH A 39 539 90 HOH HOH . 
F 6 HOH A 40 540 36 HOH HOH . 
F 6 HOH A 41 541 24 HOH HOH . 
F 6 HOH A 42 542 22 HOH HOH . 
F 6 HOH A 43 543 51 HOH HOH . 
F 6 HOH A 44 544 40 HOH HOH . 
F 6 HOH A 45 545 21 HOH HOH . 
F 6 HOH A 46 546 110 HOH HOH . 
F 6 HOH A 47 547 20 HOH HOH . 
F 6 HOH A 48 548 16 HOH HOH . 
F 6 HOH A 49 549 109 HOH HOH . 
F 6 HOH A 50 550 74 HOH HOH . 
F 6 HOH A 51 551 49 HOH HOH . 
F 6 HOH A 52 552 46 HOH HOH . 
F 6 HOH A 53 553 76 HOH HOH . 
F 6 HOH A 54 554 69 HOH HOH . 
F 6 HOH A 55 555 55 HOH HOH . 
F 6 HOH A 56 556 28 HOH HOH . 
F 6 HOH A 57 557 15 HOH HOH . 
F 6 HOH A 58 558 72 HOH HOH . 
F 6 HOH A 59 559 71 HOH HOH . 
F 6 HOH A 60 560 98 HOH HOH . 
F 6 HOH A 61 561 70 HOH HOH . 
F 6 HOH A 62 562 23 HOH HOH . 
F 6 HOH A 63 563 33 HOH HOH . 
F 6 HOH A 64 564 7 HOH HOH . 
F 6 HOH A 65 565 38 HOH HOH . 
F 6 HOH A 66 566 14 HOH HOH . 
F 6 HOH A 67 567 63 HOH HOH . 
F 6 HOH A 68 568 80 HOH HOH . 
F 6 HOH A 69 569 100 HOH HOH . 
F 6 HOH A 70 570 62 HOH HOH . 
F 6 HOH A 71 571 95 HOH HOH . 
F 6 HOH A 72 572 50 HOH HOH . 
F 6 HOH A 73 573 89 HOH HOH . 
F 6 HOH A 74 574 67 HOH HOH . 
F 6 HOH A 75 575 53 HOH HOH . 
F 6 HOH A 76 576 114 HOH HOH . 
F 6 HOH A 77 577 30 HOH HOH . 
F 6 HOH A 78 578 82 HOH HOH . 
F 6 HOH A 79 579 81 HOH HOH . 
F 6 HOH A 80 580 94 HOH HOH . 
F 6 HOH A 81 581 105 HOH HOH . 
F 6 HOH A 82 582 43 HOH HOH . 
F 6 HOH A 83 583 47 HOH HOH . 
F 6 HOH A 84 584 102 HOH HOH . 
F 6 HOH A 85 585 124 HOH HOH . 
F 6 HOH A 86 586 45 HOH HOH . 
F 6 HOH A 87 587 57 HOH HOH . 
F 6 HOH A 88 588 122 HOH HOH . 
F 6 HOH A 89 589 127 HOH HOH . 
F 6 HOH A 90 590 119 HOH HOH . 
F 6 HOH A 91 591 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . C 3 -18.565 -5.795 29.473 1 17.24 ? FE1 SF4 402 A 1 
HETATM 2 FE FE2 SF4 . . . C 3 -17.964 -7.398 26.953 1 18.25 ? FE2 SF4 402 A 1 
HETATM 3 FE FE3 SF4 . . . C 3 -19.215 -4.595 26.721 1 18.32 ? FE3 SF4 402 A 1 
HETATM 4 FE FE4 SF4 . . . C 3 -20.799 -6.97 27.79 1 19.33 ? FE4 SF4 402 A 1 
HETATM 5 S S1 SF4 . . . C 3 -19.702 -6.558 26.021 1 19.64 ? S1 SF4 402 A 1 
HETATM 6 S S2 SF4 . . . C 3 -20.31 -5.022 28.509 1 18.1 ? S2 SF4 402 A 1 
HETATM 7 S S3 SF4 . . . C 3 -19.065 -7.743 28.758 1 23.26 ? S3 SF4 402 A 1 
HETATM 8 S S4 SF4 . . . C 3 -17.493 -5.438 27.657 1 24.34 ? S4 SF4 402 A 1 
#
_model_server_stats.io_time_ms              180 
_model_server_stats.parse_time_ms           525 
_model_server_stats.create_model_time_ms    341 
_model_server_stats.query_time_ms           1472 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           8 
#