data_9DH3 # _model_server_result.job_id R2eAR1_l2t5K28wwSTgJPQ _model_server_result.datetime_utc '2025-02-26 09:06:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1102}' # _entry.id 9DH3 # _exptl.entry_id 9DH3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 354.386 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DH3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # _chem_comp.formula 'C16 H14 N6 O2 S' _chem_comp.formula_weight 354.386 _chem_comp.id A1A4L _chem_comp.mon_nstd_flag . _chem_comp.name "2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N13 A1A4L doub 1 n y C12 C11 A1A4L sing 2 n y N13 C14 A1A4L sing 3 n y C11 C10 A1A4L doub 4 n y C14 N15 A1A4L doub 5 n y C10 N15 A1A4L sing 6 n y C10 N09 A1A4L sing 7 n n N09 C07 A1A4L sing 8 n n C07 O08 A1A4L doub 9 n n C07 C06 A1A4L sing 10 n n C06 N05 A1A4L sing 11 n n N05 N04 A1A4L sing 12 n n N05 C16 A1A4L sing 13 n n O17 C16 A1A4L doub 14 n n N04 C03 A1A4L doub 15 n n C16 C18 A1A4L sing 16 n n C03 C02 A1A4L sing 17 n n C03 N25 A1A4L sing 18 n n C18 N25 A1A4L sing 19 n y C18 C19 A1A4L doub 20 n y C02 C01 A1A4L sing 21 n n N25 C24 A1A4L sing 22 n y C19 C20 A1A4L sing 23 n y C24 C20 A1A4L doub 24 n y C24 C23 A1A4L sing 25 n y C20 S21 A1A4L sing 26 n y C23 C22 A1A4L doub 27 n y S21 C22 A1A4L sing 28 n y C22 H1 A1A4L sing 29 n n C01 H2 A1A4L sing 30 n n C01 H3 A1A4L sing 31 n n C01 H4 A1A4L sing 32 n n C02 H5 A1A4L sing 33 n n C02 H6 A1A4L sing 34 n n C06 H7 A1A4L sing 35 n n C06 H8 A1A4L sing 36 n n N09 H9 A1A4L sing 37 n n C11 H10 A1A4L sing 38 n n C12 H11 A1A4L sing 39 n n C14 H12 A1A4L sing 40 n n C19 H13 A1A4L sing 41 n n C23 H14 A1A4L sing 42 n n # _atom_sites.entry_id 9DH3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1101 1039 ADP ADP . F 3 A1A4L A 1 1102 1139 A1A4L LIG . G 4 CPS A 1 1103 1239 CPS CPS . H 2 ADP B 1 1101 1039 ADP ADP . I 3 A1A4L B 1 1102 1139 A1A4L LIG . J 4 CPS B 1 1103 1239 CPS CPS . K 2 ADP C 1 1101 1039 ADP ADP . L 3 A1A4L C 1 1102 1139 A1A4L LIG . M 4 CPS C 1 1103 1239 CPS CPS . N 2 ADP D 1 1101 1039 ADP ADP . O 3 A1A4L D 1 1102 1139 A1A4L LIG . P 4 CPS D 1 1103 1239 CPS CPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1A4L . . . F 3 125.19 127.419 177.966 1 33.09 ? C10 A1A4L 1102 A 1 HETATM 2 C C20 A1A4L . . . F 3 125.615 129.429 186.934 1 25.61 ? C20 A1A4L 1102 A 1 HETATM 3 C C22 A1A4L . . . F 3 124.699 128.008 188.927 1 39.58 ? C22 A1A4L 1102 A 1 HETATM 4 C C24 A1A4L . . . F 3 125.419 128.093 186.628 1 34.74 ? C24 A1A4L 1102 A 1 HETATM 5 C C01 A1A4L . . . F 3 126.182 124.404 185.74 1 49.42 ? C01 A1A4L 1102 A 1 HETATM 6 C C02 A1A4L . . . F 3 125.23 125.346 185.025 1 46.74 ? C02 A1A4L 1102 A 1 HETATM 7 C C03 A1A4L . . . F 3 125.775 126.684 184.545 1 36.95 ? C03 A1A4L 1102 A 1 HETATM 8 N N04 A1A4L . . . F 3 126.22 126.739 183.325 1 35.39 ? N04 A1A4L 1102 A 1 HETATM 9 N N05 A1A4L . . . F 3 126.639 127.862 182.73 1 33.9 ? N05 A1A4L 1102 A 1 HETATM 10 C C06 A1A4L . . . F 3 127.088 127.801 181.363 1 34.85 ? C06 A1A4L 1102 A 1 HETATM 11 C C07 A1A4L . . . F 3 125.905 127.589 180.416 1 34.05 ? C07 A1A4L 1102 A 1 HETATM 12 O O08 A1A4L . . . F 3 124.809 127.413 180.841 1 33.19 ? O08 A1A4L 1102 A 1 HETATM 13 N N09 A1A4L . . . F 3 126.194 127.6 178.993 1 35.07 ? N09 A1A4L 1102 A 1 HETATM 14 C C11 A1A4L . . . F 3 125.572 127.489 176.622 1 45.73 ? C11 A1A4L 1102 A 1 HETATM 15 C C12 A1A4L . . . F 3 124.588 127.288 175.635 1 51.93 ? C12 A1A4L 1102 A 1 HETATM 16 N N13 A1A4L . . . F 3 123.328 127.063 176.019 1 46.35 ? N13 A1A4L 1102 A 1 HETATM 17 C C14 A1A4L . . . F 3 123.003 127.006 177.313 1 43.53 ? C14 A1A4L 1102 A 1 HETATM 18 N N15 A1A4L . . . F 3 123.909 127.187 178.267 1 26.12 ? N15 A1A4L 1102 A 1 HETATM 19 C C16 A1A4L . . . F 3 126.638 128.98 183.464 1 32.6 ? C16 A1A4L 1102 A 1 HETATM 20 O O17 A1A4L . . . F 3 127.012 129.997 182.974 1 34.62 ? O17 A1A4L 1102 A 1 HETATM 21 C C18 A1A4L . . . F 3 126.224 128.958 184.817 1 32.29 ? C18 A1A4L 1102 A 1 HETATM 22 C C19 A1A4L . . . F 3 126.094 130.014 185.771 1 31.31 ? C19 A1A4L 1102 A 1 HETATM 23 S S21 A1A4L . . . F 3 125.109 129.611 188.544 1 32.91 ? S21 A1A4L 1102 A 1 HETATM 24 C C23 A1A4L . . . F 3 124.913 127.308 187.756 1 40.03 ? C23 A1A4L 1102 A 1 HETATM 25 N N25 A1A4L . . . F 3 125.803 127.804 185.358 1 32.46 ? N25 A1A4L 1102 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #