data_9DH3 # _model_server_result.job_id bgC2El7IvMyx9IBfjgl5EA _model_server_result.datetime_utc '2025-02-26 09:02:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1102}' # _entry.id 9DH3 # _exptl.entry_id 9DH3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 354.386 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DH3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # _chem_comp.formula 'C16 H14 N6 O2 S' _chem_comp.formula_weight 354.386 _chem_comp.id A1A4L _chem_comp.mon_nstd_flag . _chem_comp.name "2-[(4S)-5-ethyl-8-oxothieno[2',3':4,5]pyrrolo[1,2-d][1,2,4]triazin-7(8H)-yl]-N-(pyrimidin-4-yl)acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N13 A1A4L doub 1 n y C12 C11 A1A4L sing 2 n y N13 C14 A1A4L sing 3 n y C11 C10 A1A4L doub 4 n y C14 N15 A1A4L doub 5 n y C10 N15 A1A4L sing 6 n y C10 N09 A1A4L sing 7 n n N09 C07 A1A4L sing 8 n n C07 O08 A1A4L doub 9 n n C07 C06 A1A4L sing 10 n n C06 N05 A1A4L sing 11 n n N05 N04 A1A4L sing 12 n n N05 C16 A1A4L sing 13 n n O17 C16 A1A4L doub 14 n n N04 C03 A1A4L doub 15 n n C16 C18 A1A4L sing 16 n n C03 C02 A1A4L sing 17 n n C03 N25 A1A4L sing 18 n n C18 N25 A1A4L sing 19 n y C18 C19 A1A4L doub 20 n y C02 C01 A1A4L sing 21 n n N25 C24 A1A4L sing 22 n y C19 C20 A1A4L sing 23 n y C24 C20 A1A4L doub 24 n y C24 C23 A1A4L sing 25 n y C20 S21 A1A4L sing 26 n y C23 C22 A1A4L doub 27 n y S21 C22 A1A4L sing 28 n y C22 H1 A1A4L sing 29 n n C01 H2 A1A4L sing 30 n n C01 H3 A1A4L sing 31 n n C01 H4 A1A4L sing 32 n n C02 H5 A1A4L sing 33 n n C02 H6 A1A4L sing 34 n n C06 H7 A1A4L sing 35 n n C06 H8 A1A4L sing 36 n n N09 H9 A1A4L sing 37 n n C11 H10 A1A4L sing 38 n n C12 H11 A1A4L sing 39 n n C14 H12 A1A4L sing 40 n n C19 H13 A1A4L sing 41 n n C23 H14 A1A4L sing 42 n n # _atom_sites.entry_id 9DH3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1101 1039 ADP ADP . F 3 A1A4L A 1 1102 1139 A1A4L LIG . G 4 CPS A 1 1103 1239 CPS CPS . H 2 ADP B 1 1101 1039 ADP ADP . I 3 A1A4L B 1 1102 1139 A1A4L LIG . J 4 CPS B 1 1103 1239 CPS CPS . K 2 ADP C 1 1101 1039 ADP ADP . L 3 A1A4L C 1 1102 1139 A1A4L LIG . M 4 CPS C 1 1103 1239 CPS CPS . N 2 ADP D 1 1101 1039 ADP ADP . O 3 A1A4L D 1 1102 1139 A1A4L LIG . P 4 CPS D 1 1103 1239 CPS CPS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1A4L . . . I 3 186.348 184.916 179.478 1 41.42 ? C10 A1A4L 1102 B 1 HETATM 2 C C20 A1A4L . . . I 3 187.118 182.616 186.408 1 30.54 ? C20 A1A4L 1102 B 1 HETATM 3 C C22 A1A4L . . . I 3 187.581 183.626 188.723 1 35.82 ? C22 A1A4L 1102 B 1 HETATM 4 C C24 A1A4L . . . I 3 186.432 183.807 186.619 1 34.24 ? C24 A1A4L 1102 B 1 HETATM 5 C C01 A1A4L . . . I 3 183.623 186.016 187.158 1 46.76 ? C01 A1A4L 1102 B 1 HETATM 6 C C02 A1A4L . . . I 3 184.676 186.354 186.106 1 49.27 ? C02 A1A4L 1102 B 1 HETATM 7 C C03 A1A4L . . . I 3 184.843 185.164 185.198 1 43.62 ? C03 A1A4L 1102 B 1 HETATM 8 N N04 A1A4L . . . I 3 184.174 185.186 184.08 1 44.81 ? N04 A1A4L 1102 B 1 HETATM 9 N N05 A1A4L . . . I 3 184.263 184.238 183.156 1 44.09 ? N05 A1A4L 1102 B 1 HETATM 10 C C06 A1A4L . . . I 3 183.458 184.391 181.938 1 48.81 ? C06 A1A4L 1102 B 1 HETATM 11 C C07 A1A4L . . . I 3 184.359 184.161 180.773 1 46.6 ? C07 A1A4L 1102 B 1 HETATM 12 O O08 A1A4L . . . I 3 184.139 183.269 180.031 1 47.95 ? O08 A1A4L 1102 B 1 HETATM 13 N N09 A1A4L . . . I 3 185.442 185.072 180.56 1 47 ? N09 A1A4L 1102 B 1 HETATM 14 C C11 A1A4L . . . I 3 187.346 185.868 179.379 1 47.37 ? C11 A1A4L 1102 B 1 HETATM 15 C C12 A1A4L . . . I 3 188.236 185.804 178.312 1 39.35 ? C12 A1A4L 1102 B 1 HETATM 16 N N13 A1A4L . . . I 3 188.088 184.815 177.387 1 25.48 ? N13 A1A4L 1102 B 1 HETATM 17 C C14 A1A4L . . . I 3 187.107 183.937 177.532 1 35.69 ? C14 A1A4L 1102 B 1 HETATM 18 N N15 A1A4L . . . I 3 186.244 183.953 178.538 1 42.52 ? N15 A1A4L 1102 B 1 HETATM 19 C C16 A1A4L . . . I 3 185.095 183.213 183.36 1 39.35 ? C16 A1A4L 1102 B 1 HETATM 20 O O17 A1A4L . . . I 3 185.229 182.371 182.562 1 40.25 ? O17 A1A4L 1102 B 1 HETATM 21 C C18 A1A4L . . . I 3 185.849 183.15 184.599 1 34.4 ? C18 A1A4L 1102 B 1 HETATM 22 C C19 A1A4L . . . I 3 186.76 182.208 185.102 1 34.38 ? C19 A1A4L 1102 B 1 HETATM 23 S S21 A1A4L . . . I 3 188.006 182.295 187.791 1 32.05 ? S21 A1A4L 1102 B 1 HETATM 24 C C23 A1A4L . . . I 3 186.685 184.366 187.948 1 37.18 ? C23 A1A4L 1102 B 1 HETATM 25 N N25 A1A4L . . . I 3 185.705 184.09 185.5 1 33 ? N25 A1A4L 1102 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #