data_9DI6 # _model_server_result.job_id hPAYgMY7dWx8z7hqRy2LrA _model_server_result.datetime_utc '2025-01-08 10:28:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9di6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 9DI6 # _exptl.entry_id 9DI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DI6 _cell.length_a 73.768 _cell.length_b 73.768 _cell.length_c 328.285 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 287 n n N1 CM1 LDA sing 288 n n N1 CM2 LDA sing 289 n n N1 C1 LDA sing 290 n n CM1 HM11 LDA sing 291 n n CM1 HM12 LDA sing 292 n n CM1 HM13 LDA sing 293 n n CM2 HM21 LDA sing 294 n n CM2 HM22 LDA sing 295 n n CM2 HM23 LDA sing 296 n n C1 C2 LDA sing 297 n n C1 H11 LDA sing 298 n n C1 H12 LDA sing 299 n n C2 C3 LDA sing 300 n n C2 H21 LDA sing 301 n n C2 H22 LDA sing 302 n n C3 C4 LDA sing 303 n n C3 H31 LDA sing 304 n n C3 H32 LDA sing 305 n n C4 C5 LDA sing 306 n n C4 H41 LDA sing 307 n n C4 H42 LDA sing 308 n n C5 C6 LDA sing 309 n n C5 H51 LDA sing 310 n n C5 H52 LDA sing 311 n n C6 C7 LDA sing 312 n n C6 H61 LDA sing 313 n n C6 H62 LDA sing 314 n n C7 C8 LDA sing 315 n n C7 H71 LDA sing 316 n n C7 H72 LDA sing 317 n n C8 C9 LDA sing 318 n n C8 H81 LDA sing 319 n n C8 H82 LDA sing 320 n n C9 C10 LDA sing 321 n n C9 H91 LDA sing 322 n n C9 H92 LDA sing 323 n n C10 C11 LDA sing 324 n n C10 H101 LDA sing 325 n n C10 H102 LDA sing 326 n n C11 C12 LDA sing 327 n n C11 H111 LDA sing 328 n n C11 H112 LDA sing 329 n n C12 H121 LDA sing 330 n n C12 H122 LDA sing 331 n n C12 H123 LDA sing 332 n n # _atom_sites.entry_id 9DI6 _atom_sites.fract_transf_matrix[1][1] 0.013556 _atom_sites.fract_transf_matrix[1][2] 0.007827 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1A51 A 1 1001 1001 A1A51 679 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 OG6 A 1 1003 1003 OG6 ORO . E 5 CIT A 1 1004 1004 CIT CIT . F 6 LDA A 1 1005 2001 LDA LDA . G 7 HOH A 1 1101 16 HOH HOH . G 7 HOH A 2 1102 7 HOH HOH . G 7 HOH A 3 1103 32 HOH HOH . G 7 HOH A 4 1104 14 HOH HOH . G 7 HOH A 5 1105 27 HOH HOH . G 7 HOH A 6 1106 8 HOH HOH . G 7 HOH A 7 1107 23 HOH HOH . G 7 HOH A 8 1108 9 HOH HOH . G 7 HOH A 9 1109 5 HOH HOH . G 7 HOH A 10 1110 28 HOH HOH . G 7 HOH A 11 1111 11 HOH HOH . G 7 HOH A 12 1112 36 HOH HOH . G 7 HOH A 13 1113 3 HOH HOH . G 7 HOH A 14 1114 17 HOH HOH . G 7 HOH A 15 1115 13 HOH HOH . G 7 HOH A 16 1116 1 HOH HOH . G 7 HOH A 17 1117 15 HOH HOH . G 7 HOH A 18 1118 19 HOH HOH . G 7 HOH A 19 1119 10 HOH HOH . G 7 HOH A 20 1120 4 HOH HOH . G 7 HOH A 21 1121 25 HOH HOH . G 7 HOH A 22 1122 24 HOH HOH . G 7 HOH A 23 1123 6 HOH HOH . G 7 HOH A 24 1124 21 HOH HOH . G 7 HOH A 25 1125 2 HOH HOH . G 7 HOH A 26 1126 22 HOH HOH . G 7 HOH A 27 1127 12 HOH HOH . G 7 HOH A 28 1128 18 HOH HOH . G 7 HOH A 29 1129 35 HOH HOH . G 7 HOH A 30 1130 29 HOH HOH . G 7 HOH A 31 1131 20 HOH HOH . G 7 HOH A 32 1132 30 HOH HOH . G 7 HOH A 33 1133 33 HOH HOH . G 7 HOH A 34 1134 31 HOH HOH . G 7 HOH A 35 1135 34 HOH HOH . G 7 HOH A 36 1136 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . F 6 -25.677 25.725 -10.836 1 72.39 ? N1 LDA 1005 A 1 HETATM 2 O O1 LDA . . . F 6 -24.84 26.771 -10.963 1 76.59 ? O1 LDA 1005 A 1 HETATM 3 C CM1 LDA . . . F 6 -26.953 26.171 -10.196 1 75.75 ? CM1 LDA 1005 A 1 HETATM 4 C CM2 LDA . . . F 6 -26.019 25.187 -12.185 1 71.91 ? CM2 LDA 1005 A 1 HETATM 5 C C1 LDA . . . F 6 -25.042 24.626 -10.041 1 35.02 ? C1 LDA 1005 A 1 HETATM 6 C C2 LDA . . . F 6 -24.676 24.934 -8.604 1 44.2 ? C2 LDA 1005 A 1 HETATM 7 C C3 LDA . . . F 6 -24.445 23.622 -7.855 1 36.31 ? C3 LDA 1005 A 1 HETATM 8 C C4 LDA . . . F 6 -25.748 22.942 -7.436 1 54.15 ? C4 LDA 1005 A 1 HETATM 9 C C5 LDA . . . F 6 -25.652 21.427 -7.275 1 51.83 ? C5 LDA 1005 A 1 HETATM 10 C C6 LDA . . . F 6 -27.01 20.721 -7.263 1 52.9 ? C6 LDA 1005 A 1 HETATM 11 C C7 LDA . . . F 6 -27.137 19.587 -8.279 1 46.13 ? C7 LDA 1005 A 1 HETATM 12 C C8 LDA . . . F 6 -28.457 18.825 -8.221 1 66.36 ? C8 LDA 1005 A 1 HETATM 13 C C9 LDA . . . F 6 -29.697 19.71 -8.148 1 99.22 ? C9 LDA 1005 A 1 HETATM 14 C C10 LDA . . . F 6 -29.843 20.718 -9.282 1 76.92 ? C10 LDA 1005 A 1 HETATM 15 C C11 LDA . . . F 6 -30.699 21.93 -8.928 1 96.91 ? C11 LDA 1005 A 1 HETATM 16 C C12 LDA . . . F 6 -30.013 22.865 -7.941 1 96.34 ? C12 LDA 1005 A 1 HETATM 17 H HM11 LDA . . . F 6 -27.642 26.337 -10.858 1 90.96 ? HM11 LDA 1005 A 1 HETATM 18 H HM12 LDA . . . F 6 -27.293 25.502 -9.582 1 90.96 ? HM12 LDA 1005 A 1 HETATM 19 H HM13 LDA . . . F 6 -26.828 26.992 -9.693 1 90.96 ? HM13 LDA 1005 A 1 HETATM 20 H HM21 LDA . . . F 6 -26.68 24.479 -12.125 1 86.36 ? HM21 LDA 1005 A 1 HETATM 21 H HM22 LDA . . . F 6 -25.237 24.821 -12.627 1 86.36 ? HM22 LDA 1005 A 1 HETATM 22 H HM23 LDA . . . F 6 -26.383 25.88 -12.759 1 86.36 ? HM23 LDA 1005 A 1 HETATM 23 H H11 LDA . . . F 6 -25.669 23.887 -10.078 1 42.09 ? H11 LDA 1005 A 1 HETATM 24 H H12 LDA . . . F 6 -24.251 24.37 -10.542 1 42.09 ? H12 LDA 1005 A 1 HETATM 25 H H21 LDA . . . F 6 -25.381 25.432 -8.162 1 53.1 ? H21 LDA 1005 A 1 HETATM 26 H H22 LDA . . . F 6 -23.871 25.473 -8.555 1 53.1 ? H22 LDA 1005 A 1 HETATM 27 H H31 LDA . . . F 6 -23.933 23.016 -8.413 1 43.64 ? H31 LDA 1005 A 1 HETATM 28 H H32 LDA . . . F 6 -23.903 23.788 -7.068 1 43.64 ? H32 LDA 1005 A 1 HETATM 29 H H41 LDA . . . F 6 -26.052 23.326 -6.598 1 65.05 ? H41 LDA 1005 A 1 HETATM 30 H H42 LDA . . . F 6 -26.436 23.143 -8.089 1 65.05 ? H42 LDA 1005 A 1 HETATM 31 H H51 LDA . . . F 6 -25.179 21.223 -6.452 1 62.26 ? H51 LDA 1005 A 1 HETATM 32 H H52 LDA . . . F 6 -25.109 21.063 -7.992 1 62.26 ? H52 LDA 1005 A 1 HETATM 33 H H61 LDA . . . F 6 -27.711 21.371 -7.431 1 63.54 ? H61 LDA 1005 A 1 HETATM 34 H H62 LDA . . . F 6 -27.182 20.368 -6.376 1 63.54 ? H62 LDA 1005 A 1 HETATM 35 H H71 LDA . . . F 6 -27.028 19.937 -9.177 1 55.42 ? H71 LDA 1005 A 1 HETATM 36 H H72 LDA . . . F 6 -26.415 18.951 -8.151 1 55.42 ? H72 LDA 1005 A 1 HETATM 37 H H81 LDA . . . F 6 -28.528 18.251 -9 1 79.69 ? H81 LDA 1005 A 1 HETATM 38 H H82 LDA . . . F 6 -28.45 18.232 -7.453 1 79.69 ? H82 LDA 1005 A 1 HETATM 39 H H91 LDA . . . F 6 -30.487 19.146 -8.13 1 119.13 ? H91 LDA 1005 A 1 HETATM 40 H H92 LDA . . . F 6 -29.694 20.189 -7.305 1 119.13 ? H92 LDA 1005 A 1 HETATM 41 H H101 LDA . . . F 6 -30.224 20.277 -10.057 1 92.37 ? H101 LDA 1005 A 1 HETATM 42 H H102 LDA . . . F 6 -28.963 21.022 -9.557 1 92.37 ? H102 LDA 1005 A 1 HETATM 43 H H111 LDA . . . F 6 -30.92 22.426 -9.732 1 116.36 ? H111 LDA 1005 A 1 HETATM 44 H H112 LDA . . . F 6 -31.545 21.639 -8.553 1 116.36 ? H112 LDA 1005 A 1 HETATM 45 H H121 LDA . . . F 6 -30.53 23.673 -7.797 1 115.68 ? H121 LDA 1005 A 1 HETATM 46 H H122 LDA . . . F 6 -29.89 22.443 -7.076 1 115.68 ? H122 LDA 1005 A 1 HETATM 47 H H123 LDA . . . F 6 -29.136 23.136 -8.257 1 115.68 ? H123 LDA 1005 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 943 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 47 #