data_9DI9 # _model_server_result.job_id 9ODpZ0oQbZni8KS7IXuksw _model_server_result.datetime_utc '2024-12-12 15:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9di9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9DI9 # _exptl.entry_id 9DI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DI9 _cell.length_a 126.35 _cell.length_b 126.35 _cell.length_c 74.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 249 A ASN 249 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 A O VAL 298 A VAL 298 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc3 A O ASP 300 A ASP 300 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc4 A O PHE 303 A PHE 303 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc5 A O GLY 337 A GLY 337 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc6 B O3B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc7 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 B O2A ADP . A ADP 401 1_555 D K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc9 C MG MG . A MG 402 1_555 F O3 PO4 . A PO4 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc11 C MG MG . A MG 402 1_555 G O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9DI9 _atom_sites.fract_transf_matrix[1][1] 0.007915 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 401 ADP ADP . C 3 MG A 1 402 402 MG MG . D 4 K A 1 403 403 K K . E 5 A1A40 A 1 404 501 A1A40 PFE . F 6 PO4 A 1 405 1 PO4 PO4 . G 7 HOH A 1 501 8 HOH HOH . G 7 HOH A 2 502 21 HOH HOH . G 7 HOH A 3 503 95 HOH HOH . G 7 HOH A 4 504 11 HOH HOH . G 7 HOH A 5 505 31 HOH HOH . G 7 HOH A 6 506 154 HOH HOH . G 7 HOH A 7 507 93 HOH HOH . G 7 HOH A 8 508 57 HOH HOH . G 7 HOH A 9 509 47 HOH HOH . G 7 HOH A 10 510 149 HOH HOH . G 7 HOH A 11 511 150 HOH HOH . G 7 HOH A 12 512 130 HOH HOH . G 7 HOH A 13 513 23 HOH HOH . G 7 HOH A 14 514 19 HOH HOH . G 7 HOH A 15 515 18 HOH HOH . G 7 HOH A 16 516 159 HOH HOH . G 7 HOH A 17 517 25 HOH HOH . G 7 HOH A 18 518 94 HOH HOH . G 7 HOH A 19 519 110 HOH HOH . G 7 HOH A 20 520 92 HOH HOH . G 7 HOH A 21 521 99 HOH HOH . G 7 HOH A 22 522 16 HOH HOH . G 7 HOH A 23 523 152 HOH HOH . G 7 HOH A 24 524 6 HOH HOH . G 7 HOH A 25 525 37 HOH HOH . G 7 HOH A 26 526 82 HOH HOH . G 7 HOH A 27 527 104 HOH HOH . G 7 HOH A 28 528 85 HOH HOH . G 7 HOH A 29 529 108 HOH HOH . G 7 HOH A 30 530 29 HOH HOH . G 7 HOH A 31 531 22 HOH HOH . G 7 HOH A 32 532 148 HOH HOH . G 7 HOH A 33 533 5 HOH HOH . G 7 HOH A 34 534 146 HOH HOH . G 7 HOH A 35 535 136 HOH HOH . G 7 HOH A 36 536 129 HOH HOH . G 7 HOH A 37 537 69 HOH HOH . G 7 HOH A 38 538 161 HOH HOH . G 7 HOH A 39 539 52 HOH HOH . G 7 HOH A 40 540 79 HOH HOH . G 7 HOH A 41 541 13 HOH HOH . G 7 HOH A 42 542 119 HOH HOH . G 7 HOH A 43 543 40 HOH HOH . G 7 HOH A 44 544 97 HOH HOH . G 7 HOH A 45 545 39 HOH HOH . G 7 HOH A 46 546 127 HOH HOH . G 7 HOH A 47 547 28 HOH HOH . G 7 HOH A 48 548 112 HOH HOH . G 7 HOH A 49 549 137 HOH HOH . G 7 HOH A 50 550 45 HOH HOH . G 7 HOH A 51 551 66 HOH HOH . G 7 HOH A 52 552 126 HOH HOH . G 7 HOH A 53 553 107 HOH HOH . G 7 HOH A 54 554 12 HOH HOH . G 7 HOH A 55 555 128 HOH HOH . G 7 HOH A 56 556 89 HOH HOH . G 7 HOH A 57 557 59 HOH HOH . G 7 HOH A 58 558 65 HOH HOH . G 7 HOH A 59 559 58 HOH HOH . G 7 HOH A 60 560 131 HOH HOH . G 7 HOH A 61 561 86 HOH HOH . G 7 HOH A 62 562 41 HOH HOH . G 7 HOH A 63 563 77 HOH HOH . G 7 HOH A 64 564 145 HOH HOH . G 7 HOH A 65 565 71 HOH HOH . G 7 HOH A 66 566 132 HOH HOH . G 7 HOH A 67 567 67 HOH HOH . G 7 HOH A 68 568 160 HOH HOH . G 7 HOH A 69 569 49 HOH HOH . G 7 HOH A 70 570 114 HOH HOH . G 7 HOH A 71 571 34 HOH HOH . G 7 HOH A 72 572 55 HOH HOH . G 7 HOH A 73 573 144 HOH HOH . G 7 HOH A 74 574 151 HOH HOH . G 7 HOH A 75 575 68 HOH HOH . G 7 HOH A 76 576 124 HOH HOH . G 7 HOH A 77 577 38 HOH HOH . G 7 HOH A 78 578 44 HOH HOH . G 7 HOH A 79 579 84 HOH HOH . G 7 HOH A 80 580 33 HOH HOH . G 7 HOH A 81 581 118 HOH HOH . G 7 HOH A 82 582 50 HOH HOH . G 7 HOH A 83 583 63 HOH HOH . G 7 HOH A 84 584 43 HOH HOH . G 7 HOH A 85 585 158 HOH HOH . G 7 HOH A 86 586 51 HOH HOH . G 7 HOH A 87 587 75 HOH HOH . G 7 HOH A 88 588 115 HOH HOH . G 7 HOH A 89 589 123 HOH HOH . G 7 HOH A 90 590 64 HOH HOH . G 7 HOH A 91 591 78 HOH HOH . G 7 HOH A 92 592 20 HOH HOH . G 7 HOH A 93 593 24 HOH HOH . G 7 HOH A 94 594 122 HOH HOH . G 7 HOH A 95 595 111 HOH HOH . G 7 HOH A 96 596 42 HOH HOH . G 7 HOH A 97 597 138 HOH HOH . G 7 HOH A 98 598 80 HOH HOH . G 7 HOH A 99 599 98 HOH HOH . G 7 HOH A 100 600 105 HOH HOH . G 7 HOH A 101 601 139 HOH HOH . G 7 HOH A 102 602 120 HOH HOH . G 7 HOH A 103 603 76 HOH HOH . G 7 HOH A 104 604 157 HOH HOH . G 7 HOH A 105 605 48 HOH HOH . G 7 HOH A 106 606 135 HOH HOH . G 7 HOH A 107 607 153 HOH HOH . G 7 HOH A 108 608 53 HOH HOH . G 7 HOH A 109 609 101 HOH HOH . G 7 HOH A 110 610 113 HOH HOH . G 7 HOH A 111 611 156 HOH HOH . G 7 HOH A 112 612 134 HOH HOH . G 7 HOH A 113 613 106 HOH HOH . G 7 HOH A 114 614 32 HOH HOH . G 7 HOH A 115 615 125 HOH HOH . G 7 HOH A 116 616 141 HOH HOH . G 7 HOH A 117 617 103 HOH HOH . G 7 HOH A 118 618 26 HOH HOH . G 7 HOH A 119 619 155 HOH HOH . G 7 HOH A 120 620 147 HOH HOH . G 7 HOH A 121 621 60 HOH HOH . G 7 HOH A 122 622 83 HOH HOH . G 7 HOH A 123 623 81 HOH HOH . G 7 HOH A 124 624 61 HOH HOH . G 7 HOH A 125 625 142 HOH HOH . G 7 HOH A 126 626 117 HOH HOH . G 7 HOH A 127 627 109 HOH HOH . G 7 HOH A 128 628 140 HOH HOH . G 7 HOH A 129 629 88 HOH HOH . G 7 HOH A 130 630 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 32.931 _atom_site.Cartn_y -5.993 _atom_site.Cartn_z 1.655 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.74 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #