data_9DIK
#
_model_server_result.job_id            '_W1qHj4xzekpXVkO1H4wBg' 
_model_server_result.datetime_utc      '2025-01-08 10:15:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dik 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1005}' 
#
_entry.id    9DIK 
#
_exptl.entry_id    9DIK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DIK 
_cell.length_a            68.539 
_cell.length_b            107.979 
_cell.length_c            157.835 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DIK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OE1 GLU 273 B GLU 441 1_555 J NA NA . B NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc2 B OG1 THR 318 B THR 486 1_555 I NA NA . B NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc3 B OE1 GLU 348 B GLU 516 1_555 I NA NA . B NA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     9DIK 
_atom_sites.fract_transf_matrix[1][1]    0.01459 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006336 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1A52 A 1 1001 1001 A1A52 681 . 
D 3 FMN A 1 1002 1002 FMN FMN . 
E 4 OG6 A 1 1003 1003 OG6 ORO . 
F 2 A1A52 B 1 1001 1001 A1A52 681 . 
G 3 FMN B 1 1002 1002 FMN FMN . 
H 4 OG6 B 1 1003 1003 OG6 ORO . 
I 5 NA B 1 1004 1 NA NA . 
J 5 NA B 1 1005 2 NA NA . 
K 6 HOH A 1 1101 131 HOH HOH . 
K 6 HOH A 2 1102 176 HOH HOH . 
K 6 HOH A 3 1103 201 HOH HOH . 
K 6 HOH A 4 1104 945 HOH HOH . 
K 6 HOH A 5 1105 78 HOH HOH . 
K 6 HOH A 6 1106 175 HOH HOH . 
K 6 HOH A 7 1107 181 HOH HOH . 
K 6 HOH A 8 1108 1 HOH HOH . 
K 6 HOH A 9 1109 113 HOH HOH . 
K 6 HOH A 10 1110 14 HOH HOH . 
K 6 HOH A 11 1111 21 HOH HOH . 
K 6 HOH A 12 1112 57 HOH HOH . 
K 6 HOH A 13 1113 69 HOH HOH . 
K 6 HOH A 14 1114 5 HOH HOH . 
K 6 HOH A 15 1115 197 HOH HOH . 
K 6 HOH A 16 1116 89 HOH HOH . 
K 6 HOH A 17 1117 35 HOH HOH . 
K 6 HOH A 18 1118 707 HOH HOH . 
K 6 HOH A 19 1119 311 HOH HOH . 
K 6 HOH A 20 1120 51 HOH HOH . 
K 6 HOH A 21 1121 92 HOH HOH . 
K 6 HOH A 22 1122 33 HOH HOH . 
K 6 HOH A 23 1123 20 HOH HOH . 
K 6 HOH A 24 1124 8 HOH HOH . 
K 6 HOH A 25 1125 13 HOH HOH . 
K 6 HOH A 26 1126 512 HOH HOH . 
K 6 HOH A 27 1127 234 HOH HOH . 
K 6 HOH A 28 1128 34 HOH HOH . 
K 6 HOH A 29 1129 171 HOH HOH . 
K 6 HOH A 30 1130 12 HOH HOH . 
K 6 HOH A 31 1131 218 HOH HOH . 
K 6 HOH A 32 1132 39 HOH HOH . 
K 6 HOH A 33 1133 74 HOH HOH . 
K 6 HOH A 34 1134 184 HOH HOH . 
K 6 HOH A 35 1135 216 HOH HOH . 
K 6 HOH A 36 1136 121 HOH HOH . 
K 6 HOH A 37 1137 179 HOH HOH . 
K 6 HOH A 38 1138 2 HOH HOH . 
K 6 HOH A 39 1139 151 HOH HOH . 
K 6 HOH A 40 1140 231 HOH HOH . 
K 6 HOH A 41 1141 120 HOH HOH . 
K 6 HOH A 42 1142 9 HOH HOH . 
K 6 HOH A 43 1143 556 HOH HOH . 
K 6 HOH A 44 1144 73 HOH HOH . 
K 6 HOH A 45 1145 235 HOH HOH . 
K 6 HOH A 46 1146 91 HOH HOH . 
K 6 HOH A 47 1147 717 HOH HOH . 
K 6 HOH A 48 1148 336 HOH HOH . 
K 6 HOH A 49 1149 90 HOH HOH . 
K 6 HOH A 50 1150 77 HOH HOH . 
K 6 HOH A 51 1151 315 HOH HOH . 
K 6 HOH A 52 1152 354 HOH HOH . 
K 6 HOH A 53 1153 731 HOH HOH . 
K 6 HOH A 54 1154 84 HOH HOH . 
K 6 HOH A 55 1155 10 HOH HOH . 
K 6 HOH A 56 1156 107 HOH HOH . 
K 6 HOH A 57 1157 115 HOH HOH . 
K 6 HOH A 58 1158 18 HOH HOH . 
K 6 HOH A 59 1159 266 HOH HOH . 
K 6 HOH A 60 1160 63 HOH HOH . 
K 6 HOH A 61 1161 705 HOH HOH . 
K 6 HOH A 62 1162 137 HOH HOH . 
K 6 HOH A 63 1163 53 HOH HOH . 
K 6 HOH A 64 1164 302 HOH HOH . 
K 6 HOH A 65 1165 317 HOH HOH . 
K 6 HOH A 66 1166 6 HOH HOH . 
K 6 HOH A 67 1167 174 HOH HOH . 
K 6 HOH A 68 1168 49 HOH HOH . 
K 6 HOH A 69 1169 65 HOH HOH . 
K 6 HOH A 70 1170 157 HOH HOH . 
K 6 HOH A 71 1171 38 HOH HOH . 
K 6 HOH A 72 1172 44 HOH HOH . 
K 6 HOH A 73 1173 103 HOH HOH . 
K 6 HOH A 74 1174 88 HOH HOH . 
K 6 HOH A 75 1175 56 HOH HOH . 
K 6 HOH A 76 1176 81 HOH HOH . 
K 6 HOH A 77 1177 132 HOH HOH . 
K 6 HOH A 78 1178 23 HOH HOH . 
K 6 HOH A 79 1179 86 HOH HOH . 
K 6 HOH A 80 1180 80 HOH HOH . 
K 6 HOH A 81 1181 187 HOH HOH . 
K 6 HOH A 82 1182 72 HOH HOH . 
K 6 HOH A 83 1183 391 HOH HOH . 
K 6 HOH A 84 1184 27 HOH HOH . 
K 6 HOH A 85 1185 129 HOH HOH . 
K 6 HOH A 86 1186 421 HOH HOH . 
K 6 HOH A 87 1187 41 HOH HOH . 
K 6 HOH A 88 1188 117 HOH HOH . 
K 6 HOH A 89 1189 52 HOH HOH . 
K 6 HOH A 90 1190 797 HOH HOH . 
K 6 HOH A 91 1191 207 HOH HOH . 
K 6 HOH A 92 1192 123 HOH HOH . 
K 6 HOH A 93 1193 96 HOH HOH . 
K 6 HOH A 94 1194 322 HOH HOH . 
K 6 HOH A 95 1195 256 HOH HOH . 
K 6 HOH A 96 1196 31 HOH HOH . 
K 6 HOH A 97 1197 148 HOH HOH . 
K 6 HOH A 98 1198 163 HOH HOH . 
K 6 HOH A 99 1199 212 HOH HOH . 
K 6 HOH A 100 1200 94 HOH HOH . 
K 6 HOH A 101 1201 145 HOH HOH . 
K 6 HOH A 102 1202 357 HOH HOH . 
K 6 HOH A 103 1203 209 HOH HOH . 
K 6 HOH A 104 1204 720 HOH HOH . 
K 6 HOH A 105 1205 155 HOH HOH . 
K 6 HOH A 106 1206 128 HOH HOH . 
K 6 HOH A 107 1207 112 HOH HOH . 
K 6 HOH A 108 1208 159 HOH HOH . 
K 6 HOH A 109 1209 142 HOH HOH . 
K 6 HOH A 110 1210 329 HOH HOH . 
K 6 HOH A 111 1211 498 HOH HOH . 
K 6 HOH A 112 1212 710 HOH HOH . 
K 6 HOH A 113 1213 535 HOH HOH . 
K 6 HOH A 114 1214 204 HOH HOH . 
K 6 HOH A 115 1215 48 HOH HOH . 
K 6 HOH A 116 1216 433 HOH HOH . 
K 6 HOH A 117 1217 138 HOH HOH . 
K 6 HOH A 118 1218 125 HOH HOH . 
K 6 HOH A 119 1219 262 HOH HOH . 
K 6 HOH A 120 1220 259 HOH HOH . 
K 6 HOH A 121 1221 29 HOH HOH . 
K 6 HOH A 122 1222 711 HOH HOH . 
K 6 HOH A 123 1223 182 HOH HOH . 
K 6 HOH A 124 1224 369 HOH HOH . 
K 6 HOH A 125 1225 71 HOH HOH . 
K 6 HOH A 126 1226 192 HOH HOH . 
K 6 HOH A 127 1227 527 HOH HOH . 
K 6 HOH A 128 1228 472 HOH HOH . 
K 6 HOH A 129 1229 767 HOH HOH . 
K 6 HOH A 130 1230 220 HOH HOH . 
L 6 HOH B 1 1101 283 HOH HOH . 
L 6 HOH B 2 1102 255 HOH HOH . 
L 6 HOH B 3 1103 944 HOH HOH . 
L 6 HOH B 4 1104 295 HOH HOH . 
L 6 HOH B 5 1105 245 HOH HOH . 
L 6 HOH B 6 1106 709 HOH HOH . 
L 6 HOH B 7 1107 269 HOH HOH . 
L 6 HOH B 8 1108 79 HOH HOH . 
L 6 HOH B 9 1109 30 HOH HOH . 
L 6 HOH B 10 1110 134 HOH HOH . 
L 6 HOH B 11 1111 7 HOH HOH . 
L 6 HOH B 12 1112 19 HOH HOH . 
L 6 HOH B 13 1113 28 HOH HOH . 
L 6 HOH B 14 1114 310 HOH HOH . 
L 6 HOH B 15 1115 193 HOH HOH . 
L 6 HOH B 16 1116 15 HOH HOH . 
L 6 HOH B 17 1117 59 HOH HOH . 
L 6 HOH B 18 1118 314 HOH HOH . 
L 6 HOH B 19 1119 241 HOH HOH . 
L 6 HOH B 20 1120 22 HOH HOH . 
L 6 HOH B 21 1121 186 HOH HOH . 
L 6 HOH B 22 1122 135 HOH HOH . 
L 6 HOH B 23 1123 250 HOH HOH . 
L 6 HOH B 24 1124 270 HOH HOH . 
L 6 HOH B 25 1125 100 HOH HOH . 
L 6 HOH B 26 1126 158 HOH HOH . 
L 6 HOH B 27 1127 200 HOH HOH . 
L 6 HOH B 28 1128 539 HOH HOH . 
L 6 HOH B 29 1129 93 HOH HOH . 
L 6 HOH B 30 1130 11 HOH HOH . 
L 6 HOH B 31 1131 946 HOH HOH . 
L 6 HOH B 32 1132 83 HOH HOH . 
L 6 HOH B 33 1133 32 HOH HOH . 
L 6 HOH B 34 1134 3 HOH HOH . 
L 6 HOH B 35 1135 375 HOH HOH . 
L 6 HOH B 36 1136 104 HOH HOH . 
L 6 HOH B 37 1137 312 HOH HOH . 
L 6 HOH B 38 1138 47 HOH HOH . 
L 6 HOH B 39 1139 95 HOH HOH . 
L 6 HOH B 40 1140 228 HOH HOH . 
L 6 HOH B 41 1141 377 HOH HOH . 
L 6 HOH B 42 1142 99 HOH HOH . 
L 6 HOH B 43 1143 98 HOH HOH . 
L 6 HOH B 44 1144 70 HOH HOH . 
L 6 HOH B 45 1145 706 HOH HOH . 
L 6 HOH B 46 1146 359 HOH HOH . 
L 6 HOH B 47 1147 62 HOH HOH . 
L 6 HOH B 48 1148 122 HOH HOH . 
L 6 HOH B 49 1149 335 HOH HOH . 
L 6 HOH B 50 1150 102 HOH HOH . 
L 6 HOH B 51 1151 324 HOH HOH . 
L 6 HOH B 52 1152 257 HOH HOH . 
L 6 HOH B 53 1153 25 HOH HOH . 
L 6 HOH B 54 1154 108 HOH HOH . 
L 6 HOH B 55 1155 754 HOH HOH . 
L 6 HOH B 56 1156 704 HOH HOH . 
L 6 HOH B 57 1157 198 HOH HOH . 
L 6 HOH B 58 1158 238 HOH HOH . 
L 6 HOH B 59 1159 203 HOH HOH . 
L 6 HOH B 60 1160 24 HOH HOH . 
L 6 HOH B 61 1161 64 HOH HOH . 
L 6 HOH B 62 1162 247 HOH HOH . 
L 6 HOH B 63 1163 76 HOH HOH . 
L 6 HOH B 64 1164 85 HOH HOH . 
L 6 HOH B 65 1165 304 HOH HOH . 
L 6 HOH B 66 1166 109 HOH HOH . 
L 6 HOH B 67 1167 87 HOH HOH . 
L 6 HOH B 68 1168 232 HOH HOH . 
L 6 HOH B 69 1169 389 HOH HOH . 
L 6 HOH B 70 1170 313 HOH HOH . 
L 6 HOH B 71 1171 274 HOH HOH . 
L 6 HOH B 72 1172 136 HOH HOH . 
L 6 HOH B 73 1173 424 HOH HOH . 
L 6 HOH B 74 1174 768 HOH HOH . 
L 6 HOH B 75 1175 321 HOH HOH . 
L 6 HOH B 76 1176 416 HOH HOH . 
L 6 HOH B 77 1177 772 HOH HOH . 
L 6 HOH B 78 1178 68 HOH HOH . 
L 6 HOH B 79 1179 146 HOH HOH . 
L 6 HOH B 80 1180 147 HOH HOH . 
L 6 HOH B 81 1181 332 HOH HOH . 
L 6 HOH B 82 1182 43 HOH HOH . 
L 6 HOH B 83 1183 237 HOH HOH . 
L 6 HOH B 84 1184 278 HOH HOH . 
L 6 HOH B 85 1185 106 HOH HOH . 
L 6 HOH B 86 1186 417 HOH HOH . 
L 6 HOH B 87 1187 351 HOH HOH . 
L 6 HOH B 88 1188 300 HOH HOH . 
L 6 HOH B 89 1189 943 HOH HOH . 
L 6 HOH B 90 1190 528 HOH HOH . 
L 6 HOH B 91 1191 251 HOH HOH . 
L 6 HOH B 92 1192 776 HOH HOH . 
L 6 HOH B 93 1193 253 HOH HOH . 
L 6 HOH B 94 1194 46 HOH HOH . 
L 6 HOH B 95 1195 82 HOH HOH . 
L 6 HOH B 96 1196 105 HOH HOH . 
L 6 HOH B 97 1197 703 HOH HOH . 
L 6 HOH B 98 1198 178 HOH HOH . 
L 6 HOH B 99 1199 316 HOH HOH . 
L 6 HOH B 100 1200 205 HOH HOH . 
L 6 HOH B 101 1201 221 HOH HOH . 
L 6 HOH B 102 1202 61 HOH HOH . 
L 6 HOH B 103 1203 233 HOH HOH . 
L 6 HOH B 104 1204 170 HOH HOH . 
L 6 HOH B 105 1205 331 HOH HOH . 
L 6 HOH B 106 1206 185 HOH HOH . 
L 6 HOH B 107 1207 202 HOH HOH . 
L 6 HOH B 108 1208 279 HOH HOH . 
L 6 HOH B 109 1209 172 HOH HOH . 
L 6 HOH B 110 1210 423 HOH HOH . 
L 6 HOH B 111 1211 267 HOH HOH . 
L 6 HOH B 112 1212 168 HOH HOH . 
L 6 HOH B 113 1213 586 HOH HOH . 
L 6 HOH B 114 1214 261 HOH HOH . 
L 6 HOH B 115 1215 42 HOH HOH . 
L 6 HOH B 116 1216 619 HOH HOH . 
L 6 HOH B 117 1217 356 HOH HOH . 
L 6 HOH B 118 1218 378 HOH HOH . 
L 6 HOH B 119 1219 271 HOH HOH . 
L 6 HOH B 120 1220 468 HOH HOH . 
L 6 HOH B 121 1221 244 HOH HOH . 
L 6 HOH B 122 1222 258 HOH HOH . 
L 6 HOH B 123 1223 819 HOH HOH . 
L 6 HOH B 124 1224 411 HOH HOH . 
L 6 HOH B 125 1225 309 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               14.533 
_atom_site.Cartn_y               -14.273 
_atom_site.Cartn_z               10.742 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1005 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#