data_9DIZ
#
_model_server_result.job_id            rO8qaSHx7vHihzhja6e0Gw 
_model_server_result.datetime_utc      '2025-01-08 10:08:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9diz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    9DIZ 
#
_exptl.entry_id    9DIZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9DIZ 
_cell.length_a            85.224 
_cell.length_b            85.224 
_cell.length_c            139.888 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DIZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    'P 64' 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 129 n n 
N1 C10 FMN doub 130 n n 
C2 O2 FMN doub 131 n n 
C2 N3 FMN sing 132 n n 
N3 C4 FMN sing 133 n n 
N3 HN3 FMN sing 134 n n 
C4 O4 FMN doub 135 n n 
C4 C4A FMN sing 136 n n 
C4A N5 FMN doub 137 n n 
C4A C10 FMN sing 138 n n 
N5 C5A FMN sing 139 n n 
C5A C6 FMN doub 140 n y 
C5A C9A FMN sing 141 n y 
C6 C7 FMN sing 142 n y 
C6 H6 FMN sing 143 n n 
C7 C7M FMN sing 144 n n 
C7 C8 FMN doub 145 n y 
C7M HM71 FMN sing 146 n n 
C7M HM72 FMN sing 147 n n 
C7M HM73 FMN sing 148 n n 
C8 C8M FMN sing 149 n n 
C8 C9 FMN sing 150 n y 
C8M HM81 FMN sing 151 n n 
C8M HM82 FMN sing 152 n n 
C8M HM83 FMN sing 153 n n 
C9 C9A FMN doub 154 n y 
C9 H9 FMN sing 155 n n 
C9A N10 FMN sing 156 n n 
N10 C10 FMN sing 157 n n 
N10 C1' FMN sing 158 n n 
C1' C2' FMN sing 159 n n 
C1' "H1'1" FMN sing 160 n n 
C1' "H1'2" FMN sing 161 n n 
C2' O2' FMN sing 162 n n 
C2' C3' FMN sing 163 n n 
C2' H2' FMN sing 164 n n 
O2' HO2' FMN sing 165 n n 
C3' O3' FMN sing 166 n n 
C3' C4' FMN sing 167 n n 
C3' H3' FMN sing 168 n n 
O3' HO3' FMN sing 169 n n 
C4' O4' FMN sing 170 n n 
C4' C5' FMN sing 171 n n 
C4' H4' FMN sing 172 n n 
O4' HO4' FMN sing 173 n n 
C5' O5' FMN sing 174 n n 
C5' "H5'1" FMN sing 175 n n 
C5' "H5'2" FMN sing 176 n n 
O5' P FMN sing 177 n n 
P O1P FMN doub 178 n n 
P O2P FMN sing 179 n n 
P O3P FMN sing 180 n n 
O2P HOP2 FMN sing 181 n n 
O3P HOP3 FMN sing 182 n n 
#
_atom_sites.entry_id                     9DIZ 
_atom_sites.fract_transf_matrix[1][1]    0.011734 
_atom_sites.fract_transf_matrix[1][2]    0.006775 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013549 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1A53 A 1 1001 1001 A1A53 959 . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 OG6 A 1 1003 1003 OG6 ORO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 -20.044 7.676 -14.623 1 39.85 ? N1 FMN 1002 A 1 
HETATM 2 C C2 FMN . . . C 3 -18.928 7.646 -13.811 1 41.71 ? C2 FMN 1002 A 1 
HETATM 3 O O2 FMN . . . C 3 -19.049 7.408 -12.613 1 43.03 ? O2 FMN 1002 A 1 
HETATM 4 N N3 FMN . . . C 3 -17.677 7.883 -14.337 1 37.85 ? N3 FMN 1002 A 1 
HETATM 5 C C4 FMN . . . C 3 -17.534 8.15 -15.683 1 36.74 ? C4 FMN 1002 A 1 
HETATM 6 O O4 FMN . . . C 3 -16.42 8.361 -16.159 1 37.12 ? O4 FMN 1002 A 1 
HETATM 7 C C4A FMN . . . C 3 -18.652 8.18 -16.503 1 36.38 ? C4A FMN 1002 A 1 
HETATM 8 N N5 FMN . . . C 3 -18.51 8.44 -17.846 1 41.9 ? N5 FMN 1002 A 1 
HETATM 9 C C5A FMN . . . C 3 -19.62 8.477 -18.659 1 39.96 ? C5A FMN 1002 A 1 
HETATM 10 C C6 FMN . . . C 3 -19.464 8.748 -20.01 1 35.43 ? C6 FMN 1002 A 1 
HETATM 11 C C7 FMN . . . C 3 -20.567 8.782 -20.848 1 38.12 ? C7 FMN 1002 A 1 
HETATM 12 C C7M FMN . . . C 3 -20.353 9.082 -22.302 1 51.49 ? C7M FMN 1002 A 1 
HETATM 13 C C8 FMN . . . C 3 -21.841 8.548 -20.322 1 40.03 ? C8 FMN 1002 A 1 
HETATM 14 C C8M FMN . . . C 3 -23.068 8.572 -21.19 1 54.73 ? C8M FMN 1002 A 1 
HETATM 15 C C9 FMN . . . C 3 -21.989 8.276 -18.965 1 37.78 ? C9 FMN 1002 A 1 
HETATM 16 C C9A FMN . . . C 3 -20.881 8.241 -18.132 1 35.69 ? C9A FMN 1002 A 1 
HETATM 17 N N10 FMN . . . C 3 -21.023 7.973 -16.785 1 35.28 ? N10 FMN 1002 A 1 
HETATM 18 C C10 FMN . . . C 3 -19.91 7.942 -15.97 1 37.56 ? C10 FMN 1002 A 1 
HETATM 19 C C1' FMN . . . C 3 -22.376 7.714 -16.194 1 41.8 ? C1' FMN 1002 A 1 
HETATM 20 C C2' FMN . . . C 3 -23.051 9.046 -15.895 1 42.23 ? C2' FMN 1002 A 1 
HETATM 21 O O2' FMN . . . C 3 -22.229 9.79 -15.025 1 49.56 ? O2' FMN 1002 A 1 
HETATM 22 C C3' FMN . . . C 3 -24.42 8.856 -15.25 1 37.39 ? C3' FMN 1002 A 1 
HETATM 23 O O3' FMN . . . C 3 -24.28 8.058 -14.097 1 38.91 ? O3' FMN 1002 A 1 
HETATM 24 C C4' FMN . . . C 3 -25.387 8.203 -16.229 1 36.81 ? C4' FMN 1002 A 1 
HETATM 25 O O4' FMN . . . C 3 -25.148 8.711 -17.521 1 42.15 ? O4' FMN 1002 A 1 
HETATM 26 C C5' FMN . . . C 3 -26.837 8.48 -15.865 1 32.71 ? C5' FMN 1002 A 1 
HETATM 27 O O5' FMN . . . C 3 -27.085 9.854 -16.041 1 39.83 ? O5' FMN 1002 A 1 
HETATM 28 P P FMN . . . C 3 -28.359 10.359 -16.887 1 41.04 ? P FMN 1002 A 1 
HETATM 29 O O1P FMN . . . C 3 -27.923 10.545 -18.315 1 47.21 ? O1P FMN 1002 A 1 
HETATM 30 O O2P FMN . . . C 3 -28.856 11.675 -16.338 1 41.59 ? O2P FMN 1002 A 1 
HETATM 31 O O3P FMN . . . C 3 -29.453 9.325 -16.824 1 34.23 ? O3P FMN 1002 A 1 
HETATM 32 H HN3 FMN . . . C 3 -16.84 7.859 -13.72 1 45.42 ? HN3 FMN 1002 A 1 
HETATM 33 H H6 FMN . . . C 3 -18.469 8.934 -20.415 1 42.51 ? H6 FMN 1002 A 1 
HETATM 34 H HM71 FMN . . . C 3 -21.311 9.305 -22.772 1 61.79 ? HM71 FMN 1002 A 1 
HETATM 35 H HM72 FMN . . . C 3 -19.902 8.216 -22.789 1 61.79 ? HM72 FMN 1002 A 1 
HETATM 36 H HM73 FMN . . . C 3 -19.69 9.941 -22.403 1 61.79 ? HM73 FMN 1002 A 1 
HETATM 37 H HM81 FMN . . . C 3 -23.942 8.321 -20.589 1 65.68 ? HM81 FMN 1002 A 1 
HETATM 38 H HM82 FMN . . . C 3 -22.958 7.844 -21.994 1 65.68 ? HM82 FMN 1002 A 1 
HETATM 39 H HM83 FMN . . . C 3 -23.193 9.568 -21.615 1 65.68 ? HM83 FMN 1002 A 1 
HETATM 40 H H9 FMN . . . C 3 -22.982 8.089 -18.555 1 45.33 ? H9 FMN 1002 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#