data_9DKQ
#
_model_server_result.job_id            mA9Yf7emBMAwtlxQh-F4Rw 
_model_server_result.datetime_utc      '2025-01-07 09:43:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    9DKQ 
#
_exptl.entry_id    9DKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9DKQ 
_cell.length_a            85.615 
_cell.length_b            85.615 
_cell.length_c            140.161 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    'P 64' 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             37 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              175 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             46 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              184 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.046 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 134 n n 
N1 C10 FMN doub 135 n n 
C2 O2 FMN doub 136 n n 
C2 N3 FMN sing 137 n n 
N3 C4 FMN sing 138 n n 
N3 HN3 FMN sing 139 n n 
C4 O4 FMN doub 140 n n 
C4 C4A FMN sing 141 n n 
C4A N5 FMN doub 142 n n 
C4A C10 FMN sing 143 n n 
N5 C5A FMN sing 144 n n 
C5A C6 FMN doub 145 n y 
C5A C9A FMN sing 146 n y 
C6 C7 FMN sing 147 n y 
C6 H6 FMN sing 148 n n 
C7 C7M FMN sing 149 n n 
C7 C8 FMN doub 150 n y 
C7M HM71 FMN sing 151 n n 
C7M HM72 FMN sing 152 n n 
C7M HM73 FMN sing 153 n n 
C8 C8M FMN sing 154 n n 
C8 C9 FMN sing 155 n y 
C8M HM81 FMN sing 156 n n 
C8M HM82 FMN sing 157 n n 
C8M HM83 FMN sing 158 n n 
C9 C9A FMN doub 159 n y 
C9 H9 FMN sing 160 n n 
C9A N10 FMN sing 161 n n 
N10 C10 FMN sing 162 n n 
N10 C1' FMN sing 163 n n 
C1' C2' FMN sing 164 n n 
C1' "H1'1" FMN sing 165 n n 
C1' "H1'2" FMN sing 166 n n 
C2' O2' FMN sing 167 n n 
C2' C3' FMN sing 168 n n 
C2' H2' FMN sing 169 n n 
O2' HO2' FMN sing 170 n n 
C3' O3' FMN sing 171 n n 
C3' C4' FMN sing 172 n n 
C3' H3' FMN sing 173 n n 
O3' HO3' FMN sing 174 n n 
C4' O4' FMN sing 175 n n 
C4' C5' FMN sing 176 n n 
C4' H4' FMN sing 177 n n 
O4' HO4' FMN sing 178 n n 
C5' O5' FMN sing 179 n n 
C5' "H5'1" FMN sing 180 n n 
C5' "H5'2" FMN sing 181 n n 
O5' P FMN sing 182 n n 
P O1P FMN doub 183 n n 
P O2P FMN sing 184 n n 
P O3P FMN sing 185 n n 
O2P HOP2 FMN sing 186 n n 
O3P HOP3 FMN sing 187 n n 
#
_atom_sites.entry_id                     9DKQ 
_atom_sites.fract_transf_matrix[1][1]    0.01168 
_atom_sites.fract_transf_matrix[1][2]    0.006744 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013487 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1A5Q A 1 1001 1001 A1A5Q 153 . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 OG6 A 1 1003 1003 OG6 ORO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 -3.167 -21.031 14.965 1 17.24 ? N1 FMN 1002 A 1 
HETATM 2 C C2 FMN . . . C 3 -2.591 -20.003 14.247 1 17.59 ? C2 FMN 1002 A 1 
HETATM 3 O O2 FMN . . . C 3 -2.804 -19.903 13.042 1 18.07 ? O2 FMN 1002 A 1 
HETATM 4 N N3 FMN . . . C 3 -1.776 -19.088 14.879 1 24.27 ? N3 FMN 1002 A 1 
HETATM 5 C C4 FMN . . . C 3 -1.536 -19.201 16.23 1 18.39 ? C4 FMN 1002 A 1 
HETATM 6 O O4 FMN . . . C 3 -0.811 -18.39 16.798 1 24.63 ? O4 FMN 1002 A 1 
HETATM 7 C C4A FMN . . . C 3 -2.118 -20.235 16.952 1 21.52 ? C4A FMN 1002 A 1 
HETATM 8 N N5 FMN . . . C 3 -1.88 -20.343 18.302 1 17.11 ? N5 FMN 1002 A 1 
HETATM 9 C C5A FMN . . . C 3 -2.452 -21.369 19.018 1 18.37 ? C5A FMN 1002 A 1 
HETATM 10 C C6 FMN . . . C 3 -2.197 -21.464 20.377 1 24.26 ? C6 FMN 1002 A 1 
HETATM 11 C C7 FMN . . . C 3 -2.759 -22.486 21.126 1 38.56 ? C7 FMN 1002 A 1 
HETATM 12 C C7M FMN . . . C 3 -2.46 -22.546 22.595 1 37.65 ? C7M FMN 1002 A 1 
HETATM 13 C C8 FMN . . . C 3 -3.592 -23.422 20.502 1 37.97 ? C8 FMN 1002 A 1 
HETATM 14 C C8M FMN . . . C 3 -4.223 -24.547 21.27 1 45.41 ? C8M FMN 1002 A 1 
HETATM 15 C C9 FMN . . . C 3 -3.841 -23.322 19.134 1 21.79 ? C9 FMN 1002 A 1 
HETATM 16 C C9A FMN . . . C 3 -3.274 -22.296 18.388 1 16.49 ? C9A FMN 1002 A 1 
HETATM 17 N N10 FMN . . . C 3 -3.516 -22.19 17.03 1 17.69 ? N10 FMN 1002 A 1 
HETATM 18 C C10 FMN . . . C 3 -2.938 -21.157 16.316 1 17.67 ? C10 FMN 1002 A 1 
HETATM 19 C C1' FMN . . . C 3 -4.406 -23.174 16.326 1 30.15 ? C1' FMN 1002 A 1 
HETATM 20 C C2' FMN . . . C 3 -3.679 -24.491 16.077 1 49.63 ? C2' FMN 1002 A 1 
HETATM 21 O O2' FMN . . . C 3 -2.548 -24.253 15.273 1 44.59 ? O2' FMN 1002 A 1 
HETATM 22 C C3' FMN . . . C 3 -4.577 -25.51 15.382 1 53.37 ? C3' FMN 1002 A 1 
HETATM 23 O O3' FMN . . . C 3 -5.117 -24.936 14.213 1 39.48 ? O3' FMN 1002 A 1 
HETATM 24 C C4' FMN . . . C 3 -5.719 -25.97 16.281 1 71.06 ? C4' FMN 1002 A 1 
HETATM 25 O O4' FMN . . . C 3 -5.372 -25.755 17.628 1 54 ? O4' FMN 1002 A 1 
HETATM 26 C C5' FMN . . . C 3 -6.023 -27.451 16.081 1 75.65 ? C5' FMN 1002 A 1 
HETATM 27 O O5' FMN . . . C 3 -4.959 -28.195 16.626 1 40.49 ? O5' FMN 1002 A 1 
HETATM 28 P P FMN . . . C 3 -5.191 -29.657 17.259 1 40.43 ? P FMN 1002 A 1 
HETATM 29 O O1P FMN . . . C 3 -4.592 -29.637 18.642 1 23.09 ? O1P FMN 1002 A 1 
HETATM 30 O O2P FMN . . . C 3 -4.49 -30.706 16.43 1 47.19 ? O2P FMN 1002 A 1 
HETATM 31 O O3P FMN . . . C 3 -6.665 -29.964 17.342 1 31.95 ? O3P FMN 1002 A 1 
HETATM 32 H HN3 FMN . . . C 3 -1.344 -18.314 14.336 1 29.12 ? HN3 FMN 1002 A 1 
HETATM 33 H H6 FMN . . . C 3 -1.551 -20.731 20.86 1 29.11 ? H6 FMN 1002 A 1 
HETATM 34 H HM71 FMN . . . C 3 -3.14 -23.249 23.076 1 45.18 ? HM71 FMN 1002 A 1 
HETATM 35 H HM72 FMN . . . C 3 -2.59 -21.557 23.033 1 45.18 ? HM72 FMN 1002 A 1 
HETATM 36 H HM73 FMN . . . C 3 -1.432 -22.877 22.743 1 45.18 ? HM73 FMN 1002 A 1 
HETATM 37 H HM81 FMN . . . C 3 -4.697 -25.24 20.575 1 54.49 ? HM81 FMN 1002 A 1 
HETATM 38 H HM82 FMN . . . C 3 -4.973 -24.146 21.951 1 54.49 ? HM82 FMN 1002 A 1 
HETATM 39 H HM83 FMN . . . C 3 -3.457 -25.072 21.841 1 54.49 ? HM83 FMN 1002 A 1 
HETATM 40 H H9 FMN . . . C 3 -4.485 -24.054 18.647 1 26.15 ? H9 FMN 1002 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           40 
#