data_9DKY # _model_server_result.job_id jqty_hBtDLqySyMReZ9PUg _model_server_result.datetime_utc '2025-01-08 10:11:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 9DKY # _exptl.entry_id 9DKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(7-azaspiro[3.5]nonan-7-yl)methyl]-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DKY _cell.length_a 85.303 _cell.length_b 85.303 _cell.length_c 140.703 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N4 O' _chem_comp.formula_weight 354.489 _chem_comp.id A1A59 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(7-azaspiro[3.5]nonan-7-yl)methyl]-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C08 A1A59 sing 1 n n C07 C06 A1A59 sing 2 n n C08 C06 A1A59 sing 3 n n C01 C02 A1A59 sing 4 n n C06 C05 A1A59 sing 5 n n C04 C05 A1A59 doub 6 n n C04 N03 A1A59 sing 7 n n C02 N03 A1A59 sing 8 n n C05 C09 A1A59 sing 9 n n N03 C25 A1A59 sing 10 n n C13 C14 A1A59 sing 11 n n C13 N12 A1A59 sing 12 n n C09 C24 A1A59 sing 13 n y C09 C10 A1A59 doub 14 n y C25 C24 A1A59 sing 15 n n C25 O26 A1A59 doub 16 n n C11 N12 A1A59 sing 17 n n C11 C10 A1A59 sing 18 n n C14 C15 A1A59 sing 19 n n N12 C20 A1A59 sing 20 n n C24 N23 A1A59 doub 21 n y C10 N21 A1A59 sing 22 n y N23 N21 A1A59 sing 23 n y N21 C22 A1A59 sing 24 n n C20 C19 A1A59 sing 25 n n C15 C18 A1A59 sing 26 n n C15 C19 A1A59 sing 27 n n C15 C16 A1A59 sing 28 n n C18 C17 A1A59 sing 29 n n C16 C17 A1A59 sing 30 n n C01 H013 A1A59 sing 31 n n C01 H012 A1A59 sing 32 n n C01 H011 A1A59 sing 33 n n C02 H021 A1A59 sing 34 n n C02 H022 A1A59 sing 35 n n C04 H041 A1A59 sing 36 n n C06 H061 A1A59 sing 37 n n C07 H072 A1A59 sing 38 n n C07 H071 A1A59 sing 39 n n C08 H082 A1A59 sing 40 n n C08 H081 A1A59 sing 41 n n C11 H112 A1A59 sing 42 n n C11 H111 A1A59 sing 43 n n C13 H132 A1A59 sing 44 n n C13 H131 A1A59 sing 45 n n C14 H141 A1A59 sing 46 n n C14 H142 A1A59 sing 47 n n C16 H162 A1A59 sing 48 n n C16 H161 A1A59 sing 49 n n C17 H172 A1A59 sing 50 n n C17 H171 A1A59 sing 51 n n C18 H181 A1A59 sing 52 n n C18 H182 A1A59 sing 53 n n C19 H191 A1A59 sing 54 n n C19 H192 A1A59 sing 55 n n C20 H201 A1A59 sing 56 n n C20 H202 A1A59 sing 57 n n C22 H221 A1A59 sing 58 n n C22 H222 A1A59 sing 59 n n C22 H223 A1A59 sing 60 n n # _atom_sites.entry_id 9DKY _atom_sites.fract_transf_matrix[1][1] 0.011723 _atom_sites.fract_transf_matrix[1][2] 0.006768 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1A59 A 1 1001 1001 A1A59 174 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 OG6 A 1 1003 1003 OG6 ORO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1A59 . . . B 2 21.403 -13.5 14.374 1 30.23 ? C01 A1A59 1001 A 1 HETATM 2 C C02 A1A59 . . . B 2 21.69 -12.33 15.341 1 45.9 ? C02 A1A59 1001 A 1 HETATM 3 C C04 A1A59 . . . B 2 24.077 -11.509 15.119 1 43.34 ? C04 A1A59 1001 A 1 HETATM 4 C C05 A1A59 . . . B 2 25.528 -11.559 15.547 1 52.28 ? C05 A1A59 1001 A 1 HETATM 5 C C06 A1A59 . . . B 2 26.573 -10.639 14.873 1 40.89 ? C06 A1A59 1001 A 1 HETATM 6 C C07 A1A59 . . . B 2 26.136 -10.209 13.469 1 42 ? C07 A1A59 1001 A 1 HETATM 7 C C08 A1A59 . . . B 2 27.584 -10.637 13.719 1 43.38 ? C08 A1A59 1001 A 1 HETATM 8 C C09 A1A59 . . . B 2 25.963 -12.523 16.65 1 48.79 ? C09 A1A59 1001 A 1 HETATM 9 C C10 A1A59 . . . B 2 27.22 -12.804 17.268 1 43.47 ? C10 A1A59 1001 A 1 HETATM 10 C C11 A1A59 . . . B 2 28.622 -12.158 16.966 1 39.88 ? C11 A1A59 1001 A 1 HETATM 11 C C13 A1A59 . . . B 2 29.807 -10.395 16.502 1 57.2 ? C13 A1A59 1001 A 1 HETATM 12 C C14 A1A59 . . . B 2 30.646 -9.295 17.204 1 58.3 ? C14 A1A59 1001 A 1 HETATM 13 C C15 A1A59 . . . B 2 30.764 -9.392 18.644 1 58.19 ? C15 A1A59 1001 A 1 HETATM 14 C C16 A1A59 . . . B 2 30.496 -8.062 19.364 1 52.51 ? C16 A1A59 1001 A 1 HETATM 15 C C17 A1A59 . . . B 2 31.975 -7.976 19.764 1 42.42 ? C17 A1A59 1001 A 1 HETATM 16 C C18 A1A59 . . . B 2 32.224 -9.347 19.122 1 55.35 ? C18 A1A59 1001 A 1 HETATM 17 C C19 A1A59 . . . B 2 30.165 -10.595 19.155 1 53.63 ? C19 A1A59 1001 A 1 HETATM 18 C C20 A1A59 . . . B 2 28.721 -10.723 18.641 1 42.65 ? C20 A1A59 1001 A 1 HETATM 19 C C22 A1A59 . . . B 2 28.025 -14.35 19.064 1 63.03 ? C22 A1A59 1001 A 1 HETATM 20 C C24 A1A59 . . . B 2 25.019 -13.349 17.256 1 42.73 ? C24 A1A59 1001 A 1 HETATM 21 C C25 A1A59 . . . B 2 23.518 -13.305 16.82 1 34.08 ? C25 A1A59 1001 A 1 HETATM 22 N N03 A1A59 . . . B 2 23.098 -12.377 15.759 1 28.22 ? N03 A1A59 1001 A 1 HETATM 23 N N12 A1A59 . . . B 2 28.688 -10.963 17.224 1 42.58 ? N12 A1A59 1001 A 1 HETATM 24 N N21 A1A59 . . . B 2 27.005 -13.757 18.189 1 41.92 ? N21 A1A59 1001 A 1 HETATM 25 N N23 A1A59 . . . B 2 25.669 -14.094 18.186 1 43.05 ? N23 A1A59 1001 A 1 HETATM 26 O O26 A1A59 . . . B 2 22.718 -14.013 17.339 1 39.28 ? O26 A1A59 1001 A 1 HETATM 27 H H013 A1A59 . . . B 2 20.446 -13.572 14.228 1 36.28 ? H013 A1A59 1001 A 1 HETATM 28 H H012 A1A59 . . . B 2 21.733 -14.327 14.76 1 36.28 ? H012 A1A59 1001 A 1 HETATM 29 H H011 A1A59 . . . B 2 21.848 -13.338 13.528 1 36.28 ? H011 A1A59 1001 A 1 HETATM 30 H H021 A1A59 . . . B 2 21.118 -12.406 16.121 1 55.08 ? H021 A1A59 1001 A 1 HETATM 31 H H022 A1A59 . . . B 2 21.512 -11.488 14.894 1 55.08 ? H022 A1A59 1001 A 1 HETATM 32 H H041 A1A59 . . . B 2 23.811 -10.925 14.447 1 52.01 ? H041 A1A59 1001 A 1 HETATM 33 H H061 A1A59 . . . B 2 26.7 -9.842 15.411 1 49.07 ? H061 A1A59 1001 A 1 HETATM 34 H H072 A1A59 . . . B 2 25.587 -10.848 12.988 1 50.4 ? H072 A1A59 1001 A 1 HETATM 35 H H071 A1A59 . . . B 2 25.996 -9.256 13.348 1 50.4 ? H071 A1A59 1001 A 1 HETATM 36 H H082 A1A59 . . . B 2 28.236 -9.919 13.735 1 52.05 ? H082 A1A59 1001 A 1 HETATM 37 H H081 A1A59 . . . B 2 27.827 -11.51 13.374 1 52.05 ? H081 A1A59 1001 A 1 HETATM 38 H H112 A1A59 . . . B 2 29.291 -12.621 17.495 1 47.86 ? H112 A1A59 1001 A 1 HETATM 39 H H111 A1A59 . . . B 2 28.817 -12.278 16.024 1 47.86 ? H111 A1A59 1001 A 1 HETATM 40 H H132 A1A59 . . . B 2 30.41 -11.123 16.284 1 68.65 ? H132 A1A59 1001 A 1 HETATM 41 H H131 A1A59 . . . B 2 29.457 -10.013 15.682 1 68.65 ? H131 A1A59 1001 A 1 HETATM 42 H H141 A1A59 . . . B 2 30.24 -8.438 16.998 1 69.96 ? H141 A1A59 1001 A 1 HETATM 43 H H142 A1A59 . . . B 2 31.541 -9.323 16.831 1 69.96 ? H142 A1A59 1001 A 1 HETATM 44 H H162 A1A59 . . . B 2 29.908 -8.164 20.128 1 63.02 ? H162 A1A59 1001 A 1 HETATM 45 H H161 A1A59 . . . B 2 30.233 -7.355 18.755 1 63.02 ? H161 A1A59 1001 A 1 HETATM 46 H H172 A1A59 . . . B 2 32.444 -7.259 19.31 1 50.9 ? H172 A1A59 1001 A 1 HETATM 47 H H171 A1A59 . . . B 2 32.103 -7.985 20.726 1 50.9 ? H171 A1A59 1001 A 1 HETATM 48 H H181 A1A59 . . . B 2 32.856 -9.305 18.387 1 66.42 ? H181 A1A59 1001 A 1 HETATM 49 H H182 A1A59 . . . B 2 32.424 -10.035 19.776 1 66.42 ? H182 A1A59 1001 A 1 HETATM 50 H H191 A1A59 . . . B 2 30.68 -11.362 18.861 1 64.36 ? H191 A1A59 1001 A 1 HETATM 51 H H192 A1A59 . . . B 2 30.16 -10.566 20.125 1 64.36 ? H192 A1A59 1001 A 1 HETATM 52 H H201 A1A59 . . . B 2 28.287 -11.46 19.098 1 51.18 ? H201 A1A59 1001 A 1 HETATM 53 H H202 A1A59 . . . B 2 28.243 -9.901 18.834 1 51.18 ? H202 A1A59 1001 A 1 HETATM 54 H H221 A1A59 . . . B 2 28.643 -13.66 19.353 1 75.64 ? H221 A1A59 1001 A 1 HETATM 55 H H222 A1A59 . . . B 2 28.51 -15.035 18.577 1 75.64 ? H222 A1A59 1001 A 1 HETATM 56 H H223 A1A59 . . . B 2 27.596 -14.745 19.838 1 75.64 ? H223 A1A59 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 56 #