data_9DLK
#
_model_server_result.job_id            YTMuIIotZ13aTrclMV4b1g 
_model_server_result.datetime_utc      '2025-01-07 21:21:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dlk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    9DLK 
#
_exptl.entry_id    9DLK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9DLK 
_cell.length_a            85.76 
_cell.length_b            85.76 
_cell.length_c            139.507 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DLK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    'P 64' 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 143 n n 
N1 C10 FMN doub 144 n n 
C2 O2 FMN doub 145 n n 
C2 N3 FMN sing 146 n n 
N3 C4 FMN sing 147 n n 
N3 HN3 FMN sing 148 n n 
C4 O4 FMN doub 149 n n 
C4 C4A FMN sing 150 n n 
C4A N5 FMN doub 151 n n 
C4A C10 FMN sing 152 n n 
N5 C5A FMN sing 153 n n 
C5A C6 FMN doub 154 n y 
C5A C9A FMN sing 155 n y 
C6 C7 FMN sing 156 n y 
C6 H6 FMN sing 157 n n 
C7 C7M FMN sing 158 n n 
C7 C8 FMN doub 159 n y 
C7M HM71 FMN sing 160 n n 
C7M HM72 FMN sing 161 n n 
C7M HM73 FMN sing 162 n n 
C8 C8M FMN sing 163 n n 
C8 C9 FMN sing 164 n y 
C8M HM81 FMN sing 165 n n 
C8M HM82 FMN sing 166 n n 
C8M HM83 FMN sing 167 n n 
C9 C9A FMN doub 168 n y 
C9 H9 FMN sing 169 n n 
C9A N10 FMN sing 170 n n 
N10 C10 FMN sing 171 n n 
N10 C1' FMN sing 172 n n 
C1' C2' FMN sing 173 n n 
C1' "H1'1" FMN sing 174 n n 
C1' "H1'2" FMN sing 175 n n 
C2' O2' FMN sing 176 n n 
C2' C3' FMN sing 177 n n 
C2' H2' FMN sing 178 n n 
O2' HO2' FMN sing 179 n n 
C3' O3' FMN sing 180 n n 
C3' C4' FMN sing 181 n n 
C3' H3' FMN sing 182 n n 
O3' HO3' FMN sing 183 n n 
C4' O4' FMN sing 184 n n 
C4' C5' FMN sing 185 n n 
C4' H4' FMN sing 186 n n 
O4' HO4' FMN sing 187 n n 
C5' O5' FMN sing 188 n n 
C5' "H5'1" FMN sing 189 n n 
C5' "H5'2" FMN sing 190 n n 
O5' P FMN sing 191 n n 
P O1P FMN doub 192 n n 
P O2P FMN sing 193 n n 
P O3P FMN sing 194 n n 
O2P HOP2 FMN sing 195 n n 
O3P HOP3 FMN sing 196 n n 
#
_atom_sites.entry_id                     9DLK 
_atom_sites.fract_transf_matrix[1][1]    0.01166 
_atom_sites.fract_transf_matrix[1][2]    0.006732 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013464 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007168 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1A6D A 1 1001 1001 A1A6D 398 . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 OG6 A 1 1003 1003 OG6 ORO . 
E 5 ACY A 1 1004 1005 ACY ACT . 
F 5 ACY A 1 1005 1006 ACY ACT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 -20.054 8.017 -15.784 1 19.18 ? N1 FMN 1002 A 1 
HETATM 2 C C2 FMN . . . C 3 -18.885 7.993 -15.052 1 21.34 ? C2 FMN 1002 A 1 
HETATM 3 O O2 FMN . . . C 3 -18.93 7.795 -13.841 1 20.55 ? O2 FMN 1002 A 1 
HETATM 4 N N3 FMN . . . C 3 -17.668 8.191 -15.668 1 19.12 ? N3 FMN 1002 A 1 
HETATM 5 C C4 FMN . . . C 3 -17.623 8.413 -17.027 1 18.61 ? C4 FMN 1002 A 1 
HETATM 6 O O4 FMN . . . C 3 -16.541 8.59 -17.582 1 18.68 ? O4 FMN 1002 A 1 
HETATM 7 C C4A FMN . . . C 3 -18.799 8.434 -17.768 1 20.06 ? C4A FMN 1002 A 1 
HETATM 8 N N5 FMN . . . C 3 -18.747 8.657 -19.126 1 18.44 ? N5 FMN 1002 A 1 
HETATM 9 C C5A FMN . . . C 3 -19.909 8.686 -19.864 1 18.87 ? C5A FMN 1002 A 1 
HETATM 10 C C6 FMN . . . C 3 -19.839 8.912 -21.233 1 21.06 ? C6 FMN 1002 A 1 
HETATM 11 C C7 FMN . . . C 3 -20.996 8.942 -22.001 1 20.8 ? C7 FMN 1002 A 1 
HETATM 12 C C7M FMN . . . C 3 -20.87 9.192 -23.476 1 25.13 ? C7M FMN 1002 A 1 
HETATM 13 C C8 FMN . . . C 3 -22.235 8.742 -21.388 1 25.96 ? C8 FMN 1002 A 1 
HETATM 14 C C8M FMN . . . C 3 -23.517 8.765 -22.17 1 39.08 ? C8M FMN 1002 A 1 
HETATM 15 C C9 FMN . . . C 3 -22.299 8.519 -20.016 1 23.01 ? C9 FMN 1002 A 1 
HETATM 16 C C9A FMN . . . C 3 -21.139 8.487 -19.247 1 22.37 ? C9A FMN 1002 A 1 
HETATM 17 N N10 FMN . . . C 3 -21.196 8.263 -17.879 1 22.69 ? N10 FMN 1002 A 1 
HETATM 18 C C10 FMN . . . C 3 -20.023 8.238 -17.144 1 21.15 ? C10 FMN 1002 A 1 
HETATM 19 C C1' FMN . . . C 3 -22.517 8.046 -17.19 1 23 ? C1' FMN 1002 A 1 
HETATM 20 C C2' FMN . . . C 3 -23.175 9.391 -16.895 1 26.78 ? C2' FMN 1002 A 1 
HETATM 21 O O2' FMN . . . C 3 -22.435 10.045 -15.886 1 28.69 ? O2' FMN 1002 A 1 
HETATM 22 C C3' FMN . . . C 3 -24.625 9.251 -16.435 1 18.86 ? C3' FMN 1002 A 1 
HETATM 23 O O3' FMN . . . C 3 -24.686 8.37 -15.337 1 13.27 ? O3' FMN 1002 A 1 
HETATM 24 C C4' FMN . . . C 3 -25.523 8.739 -17.556 1 24.89 ? C4' FMN 1002 A 1 
HETATM 25 O O4' FMN . . . C 3 -25.351 9.549 -18.701 1 36.49 ? O4' FMN 1002 A 1 
HETATM 26 C C5' FMN . . . C 3 -26.999 8.722 -17.169 1 24.17 ? C5' FMN 1002 A 1 
HETATM 27 O O5' FMN . . . C 3 -27.469 10.034 -16.972 1 14.55 ? O5' FMN 1002 A 1 
HETATM 28 P P FMN . . . C 3 -28.499 10.652 -18.039 1 29.16 ? P FMN 1002 A 1 
HETATM 29 O O1P FMN . . . C 3 -27.746 10.785 -19.339 1 27.33 ? O1P FMN 1002 A 1 
HETATM 30 O O2P FMN . . . C 3 -28.988 11.999 -17.565 1 31.74 ? O2P FMN 1002 A 1 
HETATM 31 O O3P FMN . . . C 3 -29.664 9.71 -18.233 1 33.29 ? O3P FMN 1002 A 1 
HETATM 32 H HN3 FMN . . . C 3 -16.79 8.173 -15.112 1 22.94 ? HN3 FMN 1002 A 1 
HETATM 33 H H6 FMN . . . C 3 -18.871 9.066 -21.708 1 25.27 ? H6 FMN 1002 A 1 
HETATM 34 H HM71 FMN . . . C 3 -21.802 8.922 -23.972 1 30.16 ? HM71 FMN 1002 A 1 
HETATM 35 H HM72 FMN . . . C 3 -20.056 8.589 -23.878 1 30.16 ? HM72 FMN 1002 A 1 
HETATM 36 H HM73 FMN . . . C 3 -20.659 10.248 -23.649 1 30.16 ? HM73 FMN 1002 A 1 
HETATM 37 H HM81 FMN . . . C 3 -24.361 8.684 -21.485 1 46.89 ? HM81 FMN 1002 A 1 
HETATM 38 H HM82 FMN . . . C 3 -23.533 7.927 -22.867 1 46.89 ? HM82 FMN 1002 A 1 
HETATM 39 H HM83 FMN . . . C 3 -23.587 9.701 -22.725 1 46.89 ? HM83 FMN 1002 A 1 
HETATM 40 H H9 FMN . . . C 3 -23.267 8.368 -19.539 1 27.62 ? H9 FMN 1002 A 1 
HETATM 41 H "H1'1" FMN . . . C 3 -22.361 7.499 -16.26 1 27.6 ? "H1'1" FMN 1002 A 1 
HETATM 42 H "H1'2" FMN . . . C 3 -23.17 7.447 -17.825 1 27.6 ? "H1'2" FMN 1002 A 1 
HETATM 43 H H2' FMN . . . C 3 -23.18 9.968 -17.819 1 32.14 ? H2' FMN 1002 A 1 
HETATM 44 H HO2' FMN . . . C 3 -22.985 10.128 -15.079 1 34.42 ? HO2' FMN 1002 A 1 
HETATM 45 H H3' FMN . . . C 3 -24.986 10.236 -16.138 1 22.64 ? H3' FMN 1002 A 1 
HETATM 46 H HO3' FMN . . . C 3 -25.235 7.593 -15.572 1 15.92 ? HO3' FMN 1002 A 1 
HETATM 47 H H4' FMN . . . C 3 -25.228 7.711 -17.765 1 29.87 ? H4' FMN 1002 A 1 
HETATM 48 H HO4' FMN . . . C 3 -26.229 9.819 -19.045 1 43.78 ? HO4' FMN 1002 A 1 
HETATM 49 H "H5'1" FMN . . . C 3 -27.13 8.145 -16.254 1 29 ? "H5'1" FMN 1002 A 1 
HETATM 50 H "H5'2" FMN . . . C 3 -27.578 8.239 -17.956 1 29 ? "H5'2" FMN 1002 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           50 
#