data_9DLY # _model_server_result.job_id 4rx9oL7bCWaJ2qJyoqO_VQ _model_server_result.datetime_utc '2025-01-08 10:10:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 9DLY # _exptl.entry_id 9DLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 391.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{(R)-amino[6-(trifluoromethyl)pyridin-3-yl]methyl}-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9DLY _cell.length_a 85.977 _cell.length_b 85.977 _cell.length_c 139.849 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall 'P 64' _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H20 F3 N5 O' _chem_comp.formula_weight 391.39 _chem_comp.id A1A6E _chem_comp.mon_nstd_flag . _chem_comp.name 3-{(R)-amino[6-(trifluoromethyl)pyridin-3-yl]methyl}-4-cyclopropyl-6-ethyl-2-methyl-2,6-dihydro-7H-pyrazolo[3,4-c]pyridin-7-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C07 A1A6E sing 1 n n C08 C06 A1A6E sing 2 n n C07 C06 A1A6E sing 3 n n C06 C05 A1A6E sing 4 n n C04 C05 A1A6E doub 5 n n C04 N03 A1A6E sing 6 n n C05 C09 A1A6E sing 7 n n C01 C02 A1A6E sing 8 n n C02 N03 A1A6E sing 9 n n N03 C27 A1A6E sing 10 n n N12 C11 A1A6E sing 11 n n C11 C10 A1A6E sing 12 n n C11 C13 A1A6E sing 13 n n C09 C10 A1A6E doub 14 n y C09 C26 A1A6E sing 15 n y C10 N23 A1A6E sing 16 n y C27 C26 A1A6E sing 17 n n C27 O28 A1A6E doub 18 n n C13 C14 A1A6E doub 19 n y C13 C18 A1A6E sing 20 n y C26 N25 A1A6E doub 21 n y C14 C15 A1A6E sing 22 n y C18 N17 A1A6E doub 23 n y N23 N25 A1A6E sing 24 n y N23 C24 A1A6E sing 25 n n C15 C16 A1A6E doub 26 n y N17 C16 A1A6E sing 27 n y C16 C19 A1A6E sing 28 n n F20 C19 A1A6E sing 29 n n C19 F22 A1A6E sing 30 n n C19 F21 A1A6E sing 31 n n C01 H012 A1A6E sing 32 n n C01 H011 A1A6E sing 33 n n C01 H013 A1A6E sing 34 n n C02 H021 A1A6E sing 35 n n C02 H022 A1A6E sing 36 n n C04 H041 A1A6E sing 37 n n C06 H061 A1A6E sing 38 n n C07 H071 A1A6E sing 39 n n C07 H072 A1A6E sing 40 n n C08 H081 A1A6E sing 41 n n C08 H082 A1A6E sing 42 n n C11 H111 A1A6E sing 43 n n C14 H141 A1A6E sing 44 n n C15 H151 A1A6E sing 45 n n C18 H181 A1A6E sing 46 n n C24 H243 A1A6E sing 47 n n C24 H242 A1A6E sing 48 n n C24 H241 A1A6E sing 49 n n N12 H1 A1A6E sing 50 n n N12 H122 A1A6E sing 51 n n # _atom_sites.entry_id 9DLY _atom_sites.fract_transf_matrix[1][1] 0.011631 _atom_sites.fract_transf_matrix[1][2] 0.006715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1A6E A 1 1001 1001 A1A6E 211 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 OG6 A 1 1003 1003 OG6 ORO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1A6E . . . B 2 -0.924 -25.7 26.21 1 34.38 ? C01 A1A6E 1001 A 1 HETATM 2 C C02 A1A6E . . . B 2 0.54 -25.365 26.557 1 29.32 ? C02 A1A6E 1001 A 1 HETATM 3 C C04 A1A6E . . . B 2 2.224 -27.099 25.807 1 37.73 ? C04 A1A6E 1001 A 1 HETATM 4 C C05 A1A6E . . . B 2 2.983 -28.383 26.053 1 37.9 ? C05 A1A6E 1001 A 1 HETATM 5 C C06 A1A6E . . . B 2 3.964 -28.841 24.958 1 32.62 ? C06 A1A6E 1001 A 1 HETATM 6 C C07 A1A6E . . . B 2 5.069 -27.772 24.944 1 41.63 ? C07 A1A6E 1001 A 1 HETATM 7 C C08 A1A6E . . . B 2 5.423 -29.239 24.718 1 48.5 ? C08 A1A6E 1001 A 1 HETATM 8 C C09 A1A6E . . . B 2 2.761 -29.179 27.354 1 58.45 ? C09 A1A6E 1001 A 1 HETATM 9 C C10 A1A6E . . . B 2 3.279 -30.391 27.912 1 51.2 ? C10 A1A6E 1001 A 1 HETATM 10 C C11 A1A6E . . . B 2 4.321 -31.333 27.292 1 40.14 ? C11 A1A6E 1001 A 1 HETATM 11 C C13 A1A6E . . . B 2 5.505 -31.447 28.254 1 37.79 ? C13 A1A6E 1001 A 1 HETATM 12 C C14 A1A6E . . . B 2 6.146 -32.673 28.443 1 45.86 ? C14 A1A6E 1001 A 1 HETATM 13 C C15 A1A6E . . . B 2 7.214 -32.728 29.332 1 46.93 ? C15 A1A6E 1001 A 1 HETATM 14 C C16 A1A6E . . . B 2 7.599 -31.568 30.008 1 46.81 ? C16 A1A6E 1001 A 1 HETATM 15 C C18 A1A6E . . . B 2 5.938 -30.324 28.966 1 39.7 ? C18 A1A6E 1001 A 1 HETATM 16 C C19 A1A6E . . . B 2 8.774 -31.617 30.981 1 41.24 ? C19 A1A6E 1001 A 1 HETATM 17 C C24 A1A6E . . . B 2 2.926 -31.691 30.032 1 50.25 ? C24 A1A6E 1001 A 1 HETATM 18 C C26 A1A6E . . . B 2 1.852 -28.69 28.287 1 51.13 ? C26 A1A6E 1001 A 1 HETATM 19 C C27 A1A6E . . . B 2 1.066 -27.362 28.032 1 52.48 ? C27 A1A6E 1001 A 1 HETATM 20 F F20 A1A6E . . . B 2 9.928 -31.462 30.265 1 44.3 ? F20 A1A6E 1001 A 1 HETATM 21 F F21 A1A6E . . . B 2 8.651 -30.606 31.892 1 36.43 ? F21 A1A6E 1001 A 1 HETATM 22 F F22 A1A6E . . . B 2 8.799 -32.823 31.622 1 47.13 ? F22 A1A6E 1001 A 1 HETATM 23 N N03 A1A6E . . . B 2 1.282 -26.605 26.793 1 39.62 ? N03 A1A6E 1001 A 1 HETATM 24 N N12 A1A6E . . . B 2 3.737 -32.644 27.074 1 42.68 ? N12 A1A6E 1001 A 1 HETATM 25 N N17 A1A6E . . . B 2 6.961 -30.417 29.806 1 43.72 ? N17 A1A6E 1001 A 1 HETATM 26 N N23 A1A6E . . . B 2 2.695 -30.578 29.108 1 44.69 ? N23 A1A6E 1001 A 1 HETATM 27 N N25 A1A6E . . . B 2 1.824 -29.543 29.338 1 36.93 ? N25 A1A6E 1001 A 1 HETATM 28 O O28 A1A6E . . . B 2 0.296 -26.962 28.84 1 44.13 ? O28 A1A6E 1001 A 1 HETATM 29 H H012 A1A6E . . . B 2 -1.445 -24.921 26.267 1 41.23 ? H012 A1A6E 1001 A 1 HETATM 30 H H011 A1A6E . . . B 2 -1.25 -26.34 26.815 1 41.23 ? H011 A1A6E 1001 A 1 HETATM 31 H H013 A1A6E . . . B 2 -0.968 -26.043 25.337 1 41.23 ? H013 A1A6E 1001 A 1 HETATM 32 H H021 A1A6E . . . B 2 0.566 -24.832 27.329 1 35.15 ? H021 A1A6E 1001 A 1 HETATM 33 H H022 A1A6E . . . B 2 0.932 -24.897 25.844 1 35.15 ? H022 A1A6E 1001 A 1 HETATM 34 H H041 A1A6E . . . B 2 2.361 -26.623 25.02 1 45.24 ? H041 A1A6E 1001 A 1 HETATM 35 H H061 A1A6E . . . B 2 3.5 -28.908 24.144 1 39.12 ? H061 A1A6E 1001 A 1 HETATM 36 H H071 A1A6E . . . B 2 5.096 -27.226 24.181 1 49.93 ? H071 A1A6E 1001 A 1 HETATM 37 H H072 A1A6E . . . B 2 5.306 -27.422 25.783 1 49.93 ? H072 A1A6E 1001 A 1 HETATM 38 H H081 A1A6E . . . B 2 5.849 -29.669 25.436 1 58.17 ? H081 A1A6E 1001 A 1 HETATM 39 H H082 A1A6E . . . B 2 5.639 -29.472 23.834 1 58.17 ? H082 A1A6E 1001 A 1 HETATM 40 H H111 A1A6E . . . B 2 4.608 -30.992 26.465 1 48.13 ? H111 A1A6E 1001 A 1 HETATM 41 H H141 A1A6E . . . B 2 5.866 -33.432 27.986 1 55 ? H141 A1A6E 1001 A 1 HETATM 42 H H151 A1A6E . . . B 2 7.667 -33.527 29.474 1 56.29 ? H151 A1A6E 1001 A 1 HETATM 43 H H181 A1A6E . . . B 2 5.508 -29.509 28.851 1 47.61 ? H181 A1A6E 1001 A 1 HETATM 44 H H243 A1A6E . . . B 2 3.868 -31.731 30.261 1 60.27 ? H243 A1A6E 1001 A 1 HETATM 45 H H242 A1A6E . . . B 2 2.662 -32.523 29.608 1 60.27 ? H242 A1A6E 1001 A 1 HETATM 46 H H241 A1A6E . . . B 2 2.403 -31.558 30.837 1 60.27 ? H241 A1A6E 1001 A 1 HETATM 47 H H122 A1A6E . . . B 2 4.224 -33.083 26.504 1 51.18 ? H122 A1A6E 1001 A 1 HETATM 48 H H121 A1A6E . . . B 2 2.935 -32.553 26.756 1 51.18 ? H121 A1A6E 1001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #