data_9DNX # _model_server_result.job_id Fo_dJROImz5GTNYSSYhYKg _model_server_result.datetime_utc '2025-09-16 18:56:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dnx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 9DNX # _exptl.entry_id 9DNX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DNX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DNX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 161 A CYS 161 1_555 A SG CYS 172 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 173 A CYS 173 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 463 A CYS 463 1_555 A SG CYS 472 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 562 A CYS 562 1_555 A SG CYS 568 A CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 29 D CYS 29 1_555 B SG CYS 53 D CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 31 D CYS 31 1_555 B SG CYS 78 D CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf7 B SG CYS 33 D CYS 33 1_555 B SG CYS 76 D CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 55 D CYS 55 1_555 B SG CYS 73 D CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 C SG CYS 29 B CYS 29 1_555 C SG CYS 53 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 31 B CYS 31 1_555 C SG CYS 78 B CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf11 C SG CYS 33 B CYS 33 1_555 C SG CYS 76 B CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 C SG CYS 55 B CYS 55 1_555 C SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 D SG CYS 161 C CYS 161 1_555 D SG CYS 172 C CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 D SG CYS 173 C CYS 173 1_555 D SG CYS 187 C CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 D SG CYS 463 C CYS 463 1_555 D SG CYS 472 C CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 562 C CYS 562 1_555 D SG CYS 568 C CYS 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 224 n n C1 C10 CLR sing 225 n n C1 H11 CLR sing 226 n n C1 H12 CLR sing 227 n n C2 C3 CLR sing 228 n n C2 H21 CLR sing 229 n n C2 H22 CLR sing 230 n n C3 C4 CLR sing 231 n n C3 O1 CLR sing 232 n n C3 H3 CLR sing 233 n n C4 C5 CLR sing 234 n n C4 H41 CLR sing 235 n n C4 H42 CLR sing 236 n n C5 C6 CLR doub 237 n n C5 C10 CLR sing 238 n n C6 C7 CLR sing 239 n n C6 H6 CLR sing 240 n n C7 C8 CLR sing 241 n n C7 H71 CLR sing 242 n n C7 H72 CLR sing 243 n n C8 C9 CLR sing 244 n n C8 C14 CLR sing 245 n n C8 H8 CLR sing 246 n n C9 C10 CLR sing 247 n n C9 C11 CLR sing 248 n n C9 H9 CLR sing 249 n n C10 C19 CLR sing 250 n n C11 C12 CLR sing 251 n n C11 H111 CLR sing 252 n n C11 H112 CLR sing 253 n n C12 C13 CLR sing 254 n n C12 H121 CLR sing 255 n n C12 H122 CLR sing 256 n n C13 C14 CLR sing 257 n n C13 C17 CLR sing 258 n n C13 C18 CLR sing 259 n n C14 C15 CLR sing 260 n n C14 H14 CLR sing 261 n n C15 C16 CLR sing 262 n n C15 H151 CLR sing 263 n n C15 H152 CLR sing 264 n n C16 C17 CLR sing 265 n n C16 H161 CLR sing 266 n n C16 H162 CLR sing 267 n n C17 C20 CLR sing 268 n n C17 H17 CLR sing 269 n n C18 H181 CLR sing 270 n n C18 H182 CLR sing 271 n n C18 H183 CLR sing 272 n n C19 H191 CLR sing 273 n n C19 H192 CLR sing 274 n n C19 H193 CLR sing 275 n n C20 C21 CLR sing 276 n n C20 C22 CLR sing 277 n n C20 H20 CLR sing 278 n n C21 H211 CLR sing 279 n n C21 H212 CLR sing 280 n n C21 H213 CLR sing 281 n n C22 C23 CLR sing 282 n n C22 H221 CLR sing 283 n n C22 H222 CLR sing 284 n n C23 C24 CLR sing 285 n n C23 H231 CLR sing 286 n n C23 H232 CLR sing 287 n n C24 C25 CLR sing 288 n n C24 H241 CLR sing 289 n n C24 H242 CLR sing 290 n n C25 C26 CLR sing 291 n n C25 C27 CLR sing 292 n n C25 H25 CLR sing 293 n n C26 H261 CLR sing 294 n n C26 H262 CLR sing 295 n n C26 H263 CLR sing 296 n n C27 H271 CLR sing 297 n n C27 H272 CLR sing 298 n n C27 H273 CLR sing 299 n n O1 H1 CLR sing 300 n n # _atom_sites.entry_id 9DNX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL A 1 1001 1001 CL CL . F 3 CL A 1 1002 1002 CL CL . G 4 CLR A 1 1003 1003 CLR CLR . H 4 CLR A 1 1004 1004 CLR CLR . I 5 A1A8I A 1 1005 1005 A1A8I P35 . J 3 CL C 1 1001 1001 CL CL . K 3 CL C 1 1002 1002 CL CL . L 4 CLR C 1 1003 1003 CLR CLR . M 4 CLR C 1 1004 1004 CLR CLR . N 5 A1A8I C 1 1005 1005 A1A8I P35 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 4 119.573 153.118 133.523 1 51.43 ? C1 CLR 1003 A 1 HETATM 2 C C2 CLR . . . G 4 119.715 152.842 132.032 1 53.67 ? C2 CLR 1003 A 1 HETATM 3 C C3 CLR . . . G 4 118.524 153.393 131.274 1 56.42 ? C3 CLR 1003 A 1 HETATM 4 C C4 CLR . . . G 4 118.377 154.887 131.552 1 54.47 ? C4 CLR 1003 A 1 HETATM 5 C C5 CLR . . . G 4 118.326 155.196 133.026 1 52.37 ? C5 CLR 1003 A 1 HETATM 6 C C6 CLR . . . G 4 117.33 155.926 133.525 1 53.74 ? C6 CLR 1003 A 1 HETATM 7 C C7 CLR . . . G 4 117.2 156.334 134.954 1 53.23 ? C7 CLR 1003 A 1 HETATM 8 C C8 CLR . . . G 4 118.466 156.082 135.765 1 52.88 ? C8 CLR 1003 A 1 HETATM 9 C C9 CLR . . . G 4 119.076 154.724 135.392 1 53.68 ? C9 CLR 1003 A 1 HETATM 10 C C10 CLR . . . G 4 119.435 154.612 133.885 1 51 ? C10 CLR 1003 A 1 HETATM 11 C C11 CLR . . . G 4 120.233 154.365 136.333 1 50.87 ? C11 CLR 1003 A 1 HETATM 12 C C12 CLR . . . G 4 119.878 154.452 137.819 1 50.23 ? C12 CLR 1003 A 1 HETATM 13 C C13 CLR . . . G 4 119.332 155.832 138.194 1 54.84 ? C13 CLR 1003 A 1 HETATM 14 C C14 CLR . . . G 4 118.147 156.096 137.25 1 54.67 ? C14 CLR 1003 A 1 HETATM 15 C C15 CLR . . . G 4 117.47 157.328 137.833 1 53.75 ? C15 CLR 1003 A 1 HETATM 16 C C16 CLR . . . G 4 117.621 157.126 139.352 1 51.85 ? C16 CLR 1003 A 1 HETATM 17 C C17 CLR . . . G 4 118.612 155.946 139.564 1 52.79 ? C17 CLR 1003 A 1 HETATM 18 C C18 CLR . . . G 4 120.419 156.907 138.076 1 53.99 ? C18 CLR 1003 A 1 HETATM 19 C C19 CLR . . . G 4 120.741 155.347 133.546 1 54.46 ? C19 CLR 1003 A 1 HETATM 20 C C20 CLR . . . G 4 119.434 156.11 140.852 1 51.92 ? C20 CLR 1003 A 1 HETATM 21 C C21 CLR . . . G 4 120.599 155.128 140.958 1 51.95 ? C21 CLR 1003 A 1 HETATM 22 C C22 CLR . . . G 4 118.513 155.97 142.074 1 52.41 ? C22 CLR 1003 A 1 HETATM 23 C C23 CLR . . . G 4 119.115 156.395 143.409 1 51.57 ? C23 CLR 1003 A 1 HETATM 24 C C24 CLR . . . G 4 118.101 156.302 144.544 1 54.86 ? C24 CLR 1003 A 1 HETATM 25 C C25 CLR . . . G 4 118.684 156.443 145.951 1 55.38 ? C25 CLR 1003 A 1 HETATM 26 C C26 CLR . . . G 4 119.498 155.203 146.311 1 53.77 ? C26 CLR 1003 A 1 HETATM 27 C C27 CLR . . . G 4 117.605 156.69 147.001 1 53.9 ? C27 CLR 1003 A 1 HETATM 28 O O1 CLR . . . G 4 118.706 153.128 129.898 1 57.67 ? O1 CLR 1003 A 1 HETATM 29 H H11 CLR . . . G 4 120.345 152.758 133.985 1 51.34 ? H11 CLR 1003 A 1 HETATM 30 H H12 CLR . . . G 4 118.803 152.63 133.856 1 51.24 ? H12 CLR 1003 A 1 HETATM 31 H H21 CLR . . . G 4 119.788 151.885 131.888 1 51.77 ? H21 CLR 1003 A 1 HETATM 32 H H22 CLR . . . G 4 120.531 153.238 131.687 1 51.1 ? H22 CLR 1003 A 1 HETATM 33 H H3 CLR . . . G 4 117.727 152.947 131.599 1 51.92 ? H3 CLR 1003 A 1 HETATM 34 H H41 CLR . . . G 4 117.577 155.228 131.122 1 51.69 ? H41 CLR 1003 A 1 HETATM 35 H H42 CLR . . . G 4 119.126 155.343 131.138 1 51.54 ? H42 CLR 1003 A 1 HETATM 36 H H6 CLR . . . G 4 116.621 156.149 132.966 1 51.81 ? H6 CLR 1003 A 1 HETATM 37 H H71 CLR . . . G 4 116.455 155.858 135.352 1 51.78 ? H71 CLR 1003 A 1 HETATM 38 H H72 CLR . . . G 4 116.955 157.271 134.999 1 51.44 ? H72 CLR 1003 A 1 HETATM 39 H H8 CLR . . . G 4 119.102 156.786 135.561 1 51.01 ? H8 CLR 1003 A 1 HETATM 40 H H9 CLR . . . G 4 118.376 154.072 135.55 1 51.72 ? H9 CLR 1003 A 1 HETATM 41 H H111 CLR . . . G 4 120.991 154.948 136.17 1 51.2 ? H111 CLR 1003 A 1 HETATM 42 H H112 CLR . . . G 4 120.547 153.468 136.141 1 50.92 ? H112 CLR 1003 A 1 HETATM 43 H H121 CLR . . . G 4 120.668 154.273 138.351 1 50.77 ? H121 CLR 1003 A 1 HETATM 44 H H122 CLR . . . G 4 119.246 153.745 138.023 1 51.24 ? H122 CLR 1003 A 1 HETATM 45 H H14 CLR . . . G 4 117.536 155.356 137.392 1 51.83 ? H14 CLR 1003 A 1 HETATM 46 H H151 CLR . . . G 4 116.542 157.404 137.559 1 51.62 ? H151 CLR 1003 A 1 HETATM 47 H H152 CLR . . . G 4 117.913 158.138 137.535 1 51.64 ? H152 CLR 1003 A 1 HETATM 48 H H161 CLR . . . G 4 116.764 156.941 139.768 1 51.18 ? H161 CLR 1003 A 1 HETATM 49 H H162 CLR . . . G 4 117.963 157.926 139.78 1 51.53 ? H162 CLR 1003 A 1 HETATM 50 H H17 CLR . . . G 4 118.096 155.13 139.663 1 51.47 ? H17 CLR 1003 A 1 HETATM 51 H H181 CLR . . . G 4 120.155 157.754 138.469 1 51.87 ? H181 CLR 1003 A 1 HETATM 52 H H182 CLR . . . G 4 120.661 157.088 137.155 1 51.23 ? H182 CLR 1003 A 1 HETATM 53 H H183 CLR . . . G 4 121.231 156.631 138.528 1 51.62 ? H183 CLR 1003 A 1 HETATM 54 H H191 CLR . . . G 4 120.745 156.252 133.897 1 51.59 ? H191 CLR 1003 A 1 HETATM 55 H H192 CLR . . . G 4 120.874 155.415 132.588 1 52.12 ? H192 CLR 1003 A 1 HETATM 56 H H193 CLR . . . G 4 121.514 154.897 133.922 1 52.03 ? H193 CLR 1003 A 1 HETATM 57 H H20 CLR . . . G 4 119.795 157.01 140.862 1 50.69 ? H20 CLR 1003 A 1 HETATM 58 H H211 CLR . . . G 4 121.046 155.209 141.814 1 50.98 ? H211 CLR 1003 A 1 HETATM 59 H H212 CLR . . . G 4 121.265 155.274 140.27 1 50.78 ? H212 CLR 1003 A 1 HETATM 60 H H213 CLR . . . G 4 120.301 154.21 140.867 1 50.3 ? H213 CLR 1003 A 1 HETATM 61 H H221 CLR . . . G 4 118.216 155.049 142.136 1 51.38 ? H221 CLR 1003 A 1 HETATM 62 H H222 CLR . . . G 4 117.709 156.494 141.939 1 51.46 ? H222 CLR 1003 A 1 HETATM 63 H H231 CLR . . . G 4 119.437 157.308 143.341 1 50.92 ? H231 CLR 1003 A 1 HETATM 64 H H232 CLR . . . G 4 119.89 155.852 143.621 1 50.42 ? H232 CLR 1003 A 1 HETATM 65 H H241 CLR . . . G 4 117.628 155.457 144.482 1 51.75 ? H241 CLR 1003 A 1 HETATM 66 H H242 CLR . . . G 4 117.429 156.99 144.416 1 51.54 ? H242 CLR 1003 A 1 HETATM 67 H H25 CLR . . . G 4 119.284 157.206 145.949 1 50.82 ? H25 CLR 1003 A 1 HETATM 68 H H261 CLR . . . G 4 119.758 155.207 147.245 1 50.27 ? H261 CLR 1003 A 1 HETATM 69 H H262 CLR . . . G 4 120.308 155.142 145.781 1 50 ? H262 CLR 1003 A 1 HETATM 70 H H263 CLR . . . G 4 118.983 154.397 146.153 1 50.73 ? H263 CLR 1003 A 1 HETATM 71 H H271 CLR . . . G 4 117.999 156.782 147.882 1 50.71 ? H271 CLR 1003 A 1 HETATM 72 H H272 CLR . . . G 4 116.96 155.966 147.042 1 51.59 ? H272 CLR 1003 A 1 HETATM 73 H H273 CLR . . . G 4 117.114 157.505 146.813 1 51.27 ? H273 CLR 1003 A 1 HETATM 74 H H1 CLR . . . G 4 118.062 153.485 129.474 1 52.29 ? H1 CLR 1003 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #