data_9DO5 # _model_server_result.job_id Z74U3gD6iB0mViNietgZjA _model_server_result.datetime_utc '2025-07-14 03:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9do5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9DO5 # _exptl.entry_id 9DO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.645 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[2-(dimethylamino)ethoxy]-N-{(1R)-1-[(2P)-2-{1-[2-(dimethylamino)-2-oxoethyl]-1H-pyrazol-4-yl}quinolin-4-yl]ethyl}-2-methylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DO5 _cell.length_a 114.643 _cell.length_b 114.643 _cell.length_c 217.275 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 17 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 A OD1 ASP 65 A ASP 62 1_555 E ZN ZN . A ZN 404 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A ND1 HIS 76 A HIS 73 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A ND1 HIS 92 A HIS 89 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 A OD2 ASP 111 A ASP 108 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc6 A SG CYS 114 A CYS 111 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A NE2 HIS 178 A HIS 175 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 A SG CYS 192 A CYS 189 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 A SG CYS 195 A CYS 192 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 A SG CYS 195 A CYS 192 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 A SG CYS 195 A CYS 192 1_555 I ZN ZN . A ZN 408 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc12 A SG CYS 229 A CYS 226 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc13 A ND1 HIS 258 A HIS 255 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 A ND1 HIS 275 A HIS 272 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc15 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc16 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc17 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc18 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc19 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc20 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'C30 H36 N6 O3' _chem_comp.formula_weight 528.645 _chem_comp.id A1BEE _chem_comp.mon_nstd_flag . _chem_comp.name 5-[2-(dimethylamino)ethoxy]-N-{(1R)-1-[(2P)-2-{1-[2-(dimethylamino)-2-oxoethyl]-1H-pyrazol-4-yl}quinolin-4-yl]ethyl}-2-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1BEE sing 1 n n C2 N3 A1BEE sing 2 n n N3 C4 A1BEE sing 3 n n C4 C5 A1BEE sing 4 n n C5 C6 A1BEE doub 5 n y C6 C7 A1BEE sing 6 n n C6 C8 A1BEE sing 7 n y C8 C9 A1BEE doub 8 n y C9 C10 A1BEE sing 9 n y C10 O11 A1BEE sing 10 n n O11 C12 A1BEE sing 11 n n C12 C13 A1BEE sing 12 n n C13 N14 A1BEE sing 13 n n N14 C15 A1BEE sing 14 n n N14 C16 A1BEE sing 15 n n C10 C17 A1BEE doub 16 n y C4 O18 A1BEE doub 17 n n C2 C19 A1BEE sing 18 n n C19 C20 A1BEE doub 19 n y C20 C21 A1BEE sing 20 n y C21 C22 A1BEE sing 21 n n C22 C23 A1BEE doub 22 n y C23 N24 A1BEE sing 23 n y N24 C25 A1BEE sing 24 n n C25 C26 A1BEE sing 25 n n C26 N27 A1BEE sing 26 n n N27 C28 A1BEE sing 27 n n N27 C29 A1BEE sing 28 n n C26 O30 A1BEE doub 29 n n N24 N31 A1BEE sing 30 n y N31 C32 A1BEE doub 31 n y C21 N33 A1BEE doub 32 n y N33 C34 A1BEE sing 33 n y C34 C35 A1BEE doub 34 n y C35 C36 A1BEE sing 35 n y C36 C37 A1BEE doub 36 n y C37 C38 A1BEE sing 37 n y C38 C39 A1BEE doub 38 n y C17 C5 A1BEE sing 39 n y C35 C19 A1BEE sing 40 n y C32 C22 A1BEE sing 41 n y C39 C34 A1BEE sing 42 n y C20 H20 A1BEE sing 43 n n C23 H23 A1BEE sing 44 n n C25 H25A A1BEE sing 45 n n C25 H25B A1BEE sing 46 n n C28 H28B A1BEE sing 47 n n C28 H28C A1BEE sing 48 n n C28 H28A A1BEE sing 49 n n C29 H29B A1BEE sing 50 n n C29 H29A A1BEE sing 51 n n C29 H29C A1BEE sing 52 n n C12 H12A A1BEE sing 53 n n C12 H12B A1BEE sing 54 n n C13 H13A A1BEE sing 55 n n C13 H13B A1BEE sing 56 n n C15 H15A A1BEE sing 57 n n C15 H15C A1BEE sing 58 n n C15 H15B A1BEE sing 59 n n C16 H16A A1BEE sing 60 n n C16 H16B A1BEE sing 61 n n C16 H16C A1BEE sing 62 n n C17 H17 A1BEE sing 63 n n C1 H1B A1BEE sing 64 n n C1 H1C A1BEE sing 65 n n C1 H1A A1BEE sing 66 n n C2 H2 A1BEE sing 67 n n C32 H32 A1BEE sing 68 n n C36 H36 A1BEE sing 69 n n C37 H37 A1BEE sing 70 n n C38 H38 A1BEE sing 71 n n C39 H39 A1BEE sing 72 n n C7 H7B A1BEE sing 73 n n C7 H7A A1BEE sing 74 n n C7 H7C A1BEE sing 75 n n C8 H8 A1BEE sing 76 n n C9 H9 A1BEE sing 77 n n N3 H3 A1BEE sing 78 n n # _atom_sites.entry_id 9DO5 _atom_sites.fract_transf_matrix[1][1] 0.008723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BEE A 1 401 403 A1BEE J18 . C 3 ACT A 1 402 404 ACT ACT . D 4 ZN A 1 403 2 ZN ZN . E 4 ZN A 1 404 3 ZN ZN . F 4 ZN A 1 405 4 ZN ZN . G 4 ZN A 1 406 5 ZN ZN . H 4 ZN A 1 407 6 ZN ZN . I 4 ZN A 1 408 7 ZN ZN . J 4 ZN A 1 409 8 ZN ZN . K 4 ZN A 1 410 9 ZN ZN . L 5 CL A 1 411 4 CL CL . M 5 CL A 1 412 5 CL CL . N 5 CL A 1 413 6 CL CL . O 5 CL A 1 414 7 CL CL . P 5 CL A 1 415 8 CL CL . Q 5 CL A 1 416 9 CL CL . R 6 GOL A 1 417 6 GOL GOL . S 6 GOL A 1 418 7 GOL GOL . T 6 GOL A 1 419 8 GOL GOL . U 7 HOH A 1 501 95 HOH HOH . U 7 HOH A 2 502 45 HOH HOH . U 7 HOH A 3 503 154 HOH HOH . U 7 HOH A 4 504 21 HOH HOH . U 7 HOH A 5 505 96 HOH HOH . U 7 HOH A 6 506 2 HOH HOH . U 7 HOH A 7 507 11 HOH HOH . U 7 HOH A 8 508 260 HOH HOH . U 7 HOH A 9 509 263 HOH HOH . U 7 HOH A 10 510 47 HOH HOH . U 7 HOH A 11 511 49 HOH HOH . U 7 HOH A 12 512 102 HOH HOH . U 7 HOH A 13 513 202 HOH HOH . U 7 HOH A 14 514 156 HOH HOH . U 7 HOH A 15 515 39 HOH HOH . U 7 HOH A 16 516 193 HOH HOH . U 7 HOH A 17 517 203 HOH HOH . U 7 HOH A 18 518 261 HOH HOH . U 7 HOH A 19 519 74 HOH HOH . U 7 HOH A 20 520 189 HOH HOH . U 7 HOH A 21 521 240 HOH HOH . U 7 HOH A 22 522 262 HOH HOH . U 7 HOH A 23 523 59 HOH HOH . U 7 HOH A 24 524 85 HOH HOH . U 7 HOH A 25 525 30 HOH HOH . U 7 HOH A 26 526 104 HOH HOH . U 7 HOH A 27 527 106 HOH HOH . U 7 HOH A 28 528 138 HOH HOH . U 7 HOH A 29 529 188 HOH HOH . U 7 HOH A 30 530 36 HOH HOH . U 7 HOH A 31 531 27 HOH HOH . U 7 HOH A 32 532 93 HOH HOH . U 7 HOH A 33 533 140 HOH HOH . U 7 HOH A 34 534 105 HOH HOH . U 7 HOH A 35 535 121 HOH HOH . U 7 HOH A 36 536 141 HOH HOH . U 7 HOH A 37 537 214 HOH HOH . U 7 HOH A 38 538 123 HOH HOH . U 7 HOH A 39 539 76 HOH HOH . U 7 HOH A 40 540 164 HOH HOH . U 7 HOH A 41 541 213 HOH HOH . U 7 HOH A 42 542 60 HOH HOH . U 7 HOH A 43 543 146 HOH HOH . U 7 HOH A 44 544 56 HOH HOH . U 7 HOH A 45 545 178 HOH HOH . U 7 HOH A 46 546 187 HOH HOH . U 7 HOH A 47 547 134 HOH HOH . U 7 HOH A 48 548 139 HOH HOH . U 7 HOH A 49 549 128 HOH HOH . U 7 HOH A 50 550 150 HOH HOH . U 7 HOH A 51 551 80 HOH HOH . U 7 HOH A 52 552 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 A1BEE . . . B 2 52.405 27.894 -1.647 1 75.98 ? C20 A1BEE 401 A 1 HETATM 2 C C21 A1BEE . . . B 2 53.19 27.46 -2.713 1 74.34 ? C21 A1BEE 401 A 1 HETATM 3 C C22 A1BEE . . . B 2 52.607 26.604 -3.786 1 93.58 ? C22 A1BEE 401 A 1 HETATM 4 C C23 A1BEE . . . B 2 52.951 26.569 -5.119 1 116.14 ? C23 A1BEE 401 A 1 HETATM 5 C C25 A1BEE . . . B 2 52.117 25.321 -7.13 1 119.46 ? C25 A1BEE 401 A 1 HETATM 6 C C26 A1BEE . . . B 2 51.476 26.39 -8.016 1 124.65 ? C26 A1BEE 401 A 1 HETATM 7 C C28 A1BEE . . . B 2 51.751 24.807 -9.876 1 127.85 ? C28 A1BEE 401 A 1 HETATM 8 C C29 A1BEE . . . B 2 50.726 27.024 -10.261 1 125.88 ? C29 A1BEE 401 A 1 HETATM 9 C C10 A1BEE . . . B 2 51.538 34.947 -0.183 1 60.11 ? C10 A1BEE 401 A 1 HETATM 10 C C12 A1BEE . . . B 2 53.777 35.597 -0.791 1 82.85 ? C12 A1BEE 401 A 1 HETATM 11 C C13 A1BEE . . . B 2 54.291 36.801 -1.533 1 88.39 ? C13 A1BEE 401 A 1 HETATM 12 C C15 A1BEE . . . B 2 56.724 37.203 -1.46 1 76.54 ? C15 A1BEE 401 A 1 HETATM 13 C C16 A1BEE . . . B 2 55.184 38.972 -0.766 1 64.01 ? C16 A1BEE 401 A 1 HETATM 14 C C17 A1BEE . . . B 2 51.782 33.593 -0.368 1 56.93 ? C17 A1BEE 401 A 1 HETATM 15 C C19 A1BEE . . . B 2 52.939 28.72 -0.691 1 80.08 ? C19 A1BEE 401 A 1 HETATM 16 C C1 A1BEE . . . B 2 52.605 28.71 1.873 1 67.08 ? C1 A1BEE 401 A 1 HETATM 17 C C2 A1BEE . . . B 2 52.104 29.165 0.504 1 74.93 ? C2 A1BEE 401 A 1 HETATM 18 C C32 A1BEE . . . B 2 51.554 25.678 -3.688 1 107.15 ? C32 A1BEE 401 A 1 HETATM 19 C C34 A1BEE . . . B 2 55.025 28.621 -1.941 1 73.94 ? C34 A1BEE 401 A 1 HETATM 20 C C35 A1BEE . . . B 2 54.305 29.118 -0.825 1 67.81 ? C35 A1BEE 401 A 1 HETATM 21 C C36 A1BEE . . . B 2 54.972 29.986 0.075 1 83.25 ? C36 A1BEE 401 A 1 HETATM 22 C C37 A1BEE . . . B 2 56.276 30.334 -0.125 1 81.23 ? C37 A1BEE 401 A 1 HETATM 23 C C38 A1BEE . . . B 2 56.977 29.846 -1.215 1 74.98 ? C38 A1BEE 401 A 1 HETATM 24 C C39 A1BEE . . . B 2 56.376 29.006 -2.112 1 83.31 ? C39 A1BEE 401 A 1 HETATM 25 C C4 A1BEE . . . B 2 51.041 31.201 -0.37 1 67.61 ? C4 A1BEE 401 A 1 HETATM 26 C C5 A1BEE . . . B 2 50.758 32.66 -0.171 1 58.62 ? C5 A1BEE 401 A 1 HETATM 27 C C6 A1BEE . . . B 2 49.476 33.091 0.214 1 61.86 ? C6 A1BEE 401 A 1 HETATM 28 C C7 A1BEE . . . B 2 48.333 32.135 0.433 1 59.7 ? C7 A1BEE 401 A 1 HETATM 29 C C8 A1BEE . . . B 2 49.272 34.458 0.39 1 60.58 ? C8 A1BEE 401 A 1 HETATM 30 C C9 A1BEE . . . B 2 50.282 35.38 0.197 1 64.29 ? C9 A1BEE 401 A 1 HETATM 31 N N14 A1BEE . . . B 2 55.409 37.503 -0.832 1 74.48 ? N14 A1BEE 401 A 1 HETATM 32 N N24 A1BEE . . . B 2 52.143 25.683 -5.722 1 121.15 ? N24 A1BEE 401 A 1 HETATM 33 N N27 A1BEE . . . B 2 51.327 26.087 -9.317 1 128.03 ? N27 A1BEE 401 A 1 HETATM 34 N N3 A1BEE . . . B 2 51.845 30.61 0.526 1 78.57 ? N3 A1BEE 401 A 1 HETATM 35 N N31 A1BEE . . . B 2 51.27 25.119 -4.854 1 121.2 ? N31 A1BEE 401 A 1 HETATM 36 N N33 A1BEE . . . B 2 54.46 27.794 -2.876 1 78.78 ? N33 A1BEE 401 A 1 HETATM 37 O O11 A1BEE . . . B 2 52.46 35.949 -0.347 1 67.09 ? O11 A1BEE 401 A 1 HETATM 38 O O18 A1BEE . . . B 2 50.548 30.586 -1.312 1 72.67 ? O18 A1BEE 401 A 1 HETATM 39 O O30 A1BEE . . . B 2 51.122 27.463 -7.552 1 119.59 ? O30 A1BEE 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #