data_9DO5 # _model_server_result.job_id 8uXhGnkllheC9l5cQUwc6Q _model_server_result.datetime_utc '2025-07-10 20:26:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9do5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":410}' # _entry.id 9DO5 # _exptl.entry_id 9DO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DO5 _cell.length_a 114.643 _cell.length_b 114.643 _cell.length_c 217.275 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 17 1_555 K ZN ZN . A ZN 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc2 A OD1 ASP 65 A ASP 62 1_555 E ZN ZN . A ZN 404 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 A ND1 HIS 76 A HIS 73 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 A ND1 HIS 92 A HIS 89 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 A OD2 ASP 111 A ASP 108 1_555 F ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.853 ? metalc ? metalc6 A SG CYS 114 A CYS 111 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 A NE2 HIS 178 A HIS 175 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 A SG CYS 192 A CYS 189 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 A SG CYS 195 A CYS 192 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc10 A SG CYS 195 A CYS 192 1_555 I ZN ZN . A ZN 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc11 A SG CYS 195 A CYS 192 1_555 I ZN ZN . A ZN 408 8_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc12 A SG CYS 229 A CYS 226 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc13 A ND1 HIS 258 A HIS 255 1_555 J ZN ZN . A ZN 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 A ND1 HIS 275 A HIS 272 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc15 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc16 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc17 H ZN ZN . A ZN 407 1_555 U O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc18 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc19 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc20 J ZN ZN . A ZN 409 1_555 U O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9DO5 _atom_sites.fract_transf_matrix[1][1] 0.008723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1BEE A 1 401 403 A1BEE J18 . C 3 ACT A 1 402 404 ACT ACT . D 4 ZN A 1 403 2 ZN ZN . E 4 ZN A 1 404 3 ZN ZN . F 4 ZN A 1 405 4 ZN ZN . G 4 ZN A 1 406 5 ZN ZN . H 4 ZN A 1 407 6 ZN ZN . I 4 ZN A 1 408 7 ZN ZN . J 4 ZN A 1 409 8 ZN ZN . K 4 ZN A 1 410 9 ZN ZN . L 5 CL A 1 411 4 CL CL . M 5 CL A 1 412 5 CL CL . N 5 CL A 1 413 6 CL CL . O 5 CL A 1 414 7 CL CL . P 5 CL A 1 415 8 CL CL . Q 5 CL A 1 416 9 CL CL . R 6 GOL A 1 417 6 GOL GOL . S 6 GOL A 1 418 7 GOL GOL . T 6 GOL A 1 419 8 GOL GOL . U 7 HOH A 1 501 95 HOH HOH . U 7 HOH A 2 502 45 HOH HOH . U 7 HOH A 3 503 154 HOH HOH . U 7 HOH A 4 504 21 HOH HOH . U 7 HOH A 5 505 96 HOH HOH . U 7 HOH A 6 506 2 HOH HOH . U 7 HOH A 7 507 11 HOH HOH . U 7 HOH A 8 508 260 HOH HOH . U 7 HOH A 9 509 263 HOH HOH . U 7 HOH A 10 510 47 HOH HOH . U 7 HOH A 11 511 49 HOH HOH . U 7 HOH A 12 512 102 HOH HOH . U 7 HOH A 13 513 202 HOH HOH . U 7 HOH A 14 514 156 HOH HOH . U 7 HOH A 15 515 39 HOH HOH . U 7 HOH A 16 516 193 HOH HOH . U 7 HOH A 17 517 203 HOH HOH . U 7 HOH A 18 518 261 HOH HOH . U 7 HOH A 19 519 74 HOH HOH . U 7 HOH A 20 520 189 HOH HOH . U 7 HOH A 21 521 240 HOH HOH . U 7 HOH A 22 522 262 HOH HOH . U 7 HOH A 23 523 59 HOH HOH . U 7 HOH A 24 524 85 HOH HOH . U 7 HOH A 25 525 30 HOH HOH . U 7 HOH A 26 526 104 HOH HOH . U 7 HOH A 27 527 106 HOH HOH . U 7 HOH A 28 528 138 HOH HOH . U 7 HOH A 29 529 188 HOH HOH . U 7 HOH A 30 530 36 HOH HOH . U 7 HOH A 31 531 27 HOH HOH . U 7 HOH A 32 532 93 HOH HOH . U 7 HOH A 33 533 140 HOH HOH . U 7 HOH A 34 534 105 HOH HOH . U 7 HOH A 35 535 121 HOH HOH . U 7 HOH A 36 536 141 HOH HOH . U 7 HOH A 37 537 214 HOH HOH . U 7 HOH A 38 538 123 HOH HOH . U 7 HOH A 39 539 76 HOH HOH . U 7 HOH A 40 540 164 HOH HOH . U 7 HOH A 41 541 213 HOH HOH . U 7 HOH A 42 542 60 HOH HOH . U 7 HOH A 43 543 146 HOH HOH . U 7 HOH A 44 544 56 HOH HOH . U 7 HOH A 45 545 178 HOH HOH . U 7 HOH A 46 546 187 HOH HOH . U 7 HOH A 47 547 134 HOH HOH . U 7 HOH A 48 548 139 HOH HOH . U 7 HOH A 49 549 128 HOH HOH . U 7 HOH A 50 550 150 HOH HOH . U 7 HOH A 51 551 80 HOH HOH . U 7 HOH A 52 552 110 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x 46.176 _atom_site.Cartn_y 63.23 _atom_site.Cartn_z 28.083 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 348.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 410 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 103 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #