data_9DPR # _model_server_result.job_id P2mIC_ioeR5CHTS3HuexEA _model_server_result.datetime_utc '2025-03-23 15:13:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 9DPR # _exptl.entry_id 9DPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DPR _cell.length_a 71.044 _cell.length_b 71.044 _cell.length_c 145.564 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 x,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 -35.522 36.391 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 327 1_555 A SG CYS 74 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 37 A CYS 356 1_555 A SG CYS 107 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 41 A CYS 360 1_555 A SG CYS 109 A CYS 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf4 A SG CYS 73 A CYS 392 1_555 A SG CYS 73 A CYS 392 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc1 A OG1 THR 67 A THR 386 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc2 A O PRO 76 A PRO 395 1_555 M NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc3 M NA NA . A NA 512 1_555 P O HOH . A HOH 602 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc4 N NA NA . A NA 513 1_555 P O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? metalc ? metalc5 N NA NA . A NA 513 1_555 P O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 9DPR _atom_sites.fract_transf_matrix[1][1] 0.014076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 501 1 GOL GOL . C 3 CL A 1 502 1 CL CL . D 3 CL A 1 503 2 CL CL . E 3 CL A 1 504 3 CL CL . F 3 CL A 1 505 4 CL CL . G 3 CL A 1 506 5 CL CL . H 3 CL A 1 507 6 CL CL . I 3 CL A 1 508 7 CL CL . J 3 CL A 1 509 8 CL CL . K 3 CL A 1 510 9 CL CL . L 3 CL A 1 511 10 CL CL . M 4 NA A 1 512 1 NA NA . N 4 NA A 1 513 4 NA NA . O 4 NA A 1 514 5 NA NA . P 5 HOH A 1 601 1 HOH HOH . P 5 HOH A 2 602 39 HOH HOH . P 5 HOH A 3 603 77 HOH HOH . P 5 HOH A 4 604 24 HOH HOH . P 5 HOH A 5 605 3 HOH HOH . P 5 HOH A 6 606 33 HOH HOH . P 5 HOH A 7 607 72 HOH HOH . P 5 HOH A 8 608 11 HOH HOH . P 5 HOH A 9 609 15 HOH HOH . P 5 HOH A 10 610 16 HOH HOH . P 5 HOH A 11 611 71 HOH HOH . P 5 HOH A 12 612 28 HOH HOH . P 5 HOH A 13 613 75 HOH HOH . P 5 HOH A 14 614 82 HOH HOH . P 5 HOH A 15 615 9 HOH HOH . P 5 HOH A 16 616 80 HOH HOH . P 5 HOH A 17 617 37 HOH HOH . P 5 HOH A 18 618 31 HOH HOH . P 5 HOH A 19 619 43 HOH HOH . P 5 HOH A 20 620 54 HOH HOH . P 5 HOH A 21 621 57 HOH HOH . P 5 HOH A 22 622 48 HOH HOH . P 5 HOH A 23 623 5 HOH HOH . P 5 HOH A 24 624 40 HOH HOH . P 5 HOH A 25 625 2 HOH HOH . P 5 HOH A 26 626 26 HOH HOH . P 5 HOH A 27 627 78 HOH HOH . P 5 HOH A 28 628 6 HOH HOH . P 5 HOH A 29 629 68 HOH HOH . P 5 HOH A 30 630 27 HOH HOH . P 5 HOH A 31 631 74 HOH HOH . P 5 HOH A 32 632 29 HOH HOH . P 5 HOH A 33 633 76 HOH HOH . P 5 HOH A 34 634 4 HOH HOH . P 5 HOH A 35 635 73 HOH HOH . P 5 HOH A 36 636 81 HOH HOH . P 5 HOH A 37 637 41 HOH HOH . P 5 HOH A 38 638 50 HOH HOH . P 5 HOH A 39 639 60 HOH HOH . P 5 HOH A 40 640 65 HOH HOH . P 5 HOH A 41 641 7 HOH HOH . P 5 HOH A 42 642 67 HOH HOH . P 5 HOH A 43 643 35 HOH HOH . P 5 HOH A 44 644 79 HOH HOH . P 5 HOH A 45 645 66 HOH HOH . P 5 HOH A 46 646 58 HOH HOH . P 5 HOH A 47 647 12 HOH HOH . P 5 HOH A 48 648 23 HOH HOH . P 5 HOH A 49 649 53 HOH HOH . P 5 HOH A 50 650 19 HOH HOH . P 5 HOH A 51 651 22 HOH HOH . P 5 HOH A 52 652 63 HOH HOH . P 5 HOH A 53 653 18 HOH HOH . P 5 HOH A 54 654 21 HOH HOH . P 5 HOH A 55 655 45 HOH HOH . P 5 HOH A 56 656 70 HOH HOH . P 5 HOH A 57 657 69 HOH HOH . P 5 HOH A 58 658 51 HOH HOH . P 5 HOH A 59 659 59 HOH HOH . P 5 HOH A 60 660 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -38.119 -0.761 5.371 0.92 95.16 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . B 2 -37.441 -0.24 4.231 0.92 79.56 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . B 2 -37.147 -1.298 6.398 0.92 78.51 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . B 2 -37.854 -1.875 7.494 0.92 86.36 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . B 2 -36.163 -2.296 5.832 0.92 86.73 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . B 2 -36.81 -3.49 5.405 0.92 82.44 ? O3 GOL 501 A 1 HETATM 7 H H11 GOL . . . B 2 -38.723 -1.468 5.095 0.92 114.24 ? H11 GOL 501 A 1 HETATM 8 H H12 GOL . . . B 2 -38.663 -0.065 5.772 0.92 114.24 ? H12 GOL 501 A 1 HETATM 9 H HO1 GOL . . . B 2 -37.966 -0.224 3.575 0.92 95.52 ? HO1 GOL 501 A 1 HETATM 10 H H2 GOL . . . B 2 -36.626 -0.539 6.703 0.92 94.26 ? H2 GOL 501 A 1 HETATM 11 H HO2 GOL . . . B 2 -37.939 -2.701 7.369 0.92 103.68 ? HO2 GOL 501 A 1 HETATM 12 H H31 GOL . . . B 2 -35.497 -2.511 6.504 0.92 104.12 ? H31 GOL 501 A 1 HETATM 13 H H32 GOL . . . B 2 -35.692 -1.897 5.083 0.92 104.12 ? H32 GOL 501 A 1 HETATM 14 H HO3 GOL . . . B 2 -36.29 -3.93 4.913 0.92 98.98 ? HO3 GOL 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 454 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #