data_9DPR
#
_model_server_result.job_id            RVhvDN8Npc6feWSR5rFOcg 
_model_server_result.datetime_utc      '2025-03-23 18:48:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dpr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":514}' 
#
_entry.id    9DPR 
#
_exptl.entry_id    9DPR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9DPR 
_cell.length_a            71.044 
_cell.length_b            71.044 
_cell.length_c            145.564 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DPR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    'I 4bw 2bw' 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_545 x,-y-1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 -35.522 36.391 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 327 1_555 A SG CYS 74 A CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 37 A CYS 356 1_555 A SG CYS 107 A CYS 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 41 A CYS 360 1_555 A SG CYS 109 A CYS 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 A SG CYS 73 A CYS 392 1_555 A SG CYS 73 A CYS 392 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc1 A OG1 THR 67 A THR 386 1_555 O NA NA . A NA 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? 
metalc ? metalc2 A O PRO 76 A PRO 395 1_555 M NA NA . A NA 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? 
metalc ? metalc3 M NA NA . A NA 512 1_555 P O HOH . A HOH 602 6_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? 
metalc ? metalc4 N NA NA . A NA 513 1_555 P O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc5 N NA NA . A NA 513 1_555 P O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     9DPR 
_atom_sites.fract_transf_matrix[1][1]    0.014076 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 1 GOL GOL . 
C 3 CL A 1 502 1 CL CL . 
D 3 CL A 1 503 2 CL CL . 
E 3 CL A 1 504 3 CL CL . 
F 3 CL A 1 505 4 CL CL . 
G 3 CL A 1 506 5 CL CL . 
H 3 CL A 1 507 6 CL CL . 
I 3 CL A 1 508 7 CL CL . 
J 3 CL A 1 509 8 CL CL . 
K 3 CL A 1 510 9 CL CL . 
L 3 CL A 1 511 10 CL CL . 
M 4 NA A 1 512 1 NA NA . 
N 4 NA A 1 513 4 NA NA . 
O 4 NA A 1 514 5 NA NA . 
P 5 HOH A 1 601 1 HOH HOH . 
P 5 HOH A 2 602 39 HOH HOH . 
P 5 HOH A 3 603 77 HOH HOH . 
P 5 HOH A 4 604 24 HOH HOH . 
P 5 HOH A 5 605 3 HOH HOH . 
P 5 HOH A 6 606 33 HOH HOH . 
P 5 HOH A 7 607 72 HOH HOH . 
P 5 HOH A 8 608 11 HOH HOH . 
P 5 HOH A 9 609 15 HOH HOH . 
P 5 HOH A 10 610 16 HOH HOH . 
P 5 HOH A 11 611 71 HOH HOH . 
P 5 HOH A 12 612 28 HOH HOH . 
P 5 HOH A 13 613 75 HOH HOH . 
P 5 HOH A 14 614 82 HOH HOH . 
P 5 HOH A 15 615 9 HOH HOH . 
P 5 HOH A 16 616 80 HOH HOH . 
P 5 HOH A 17 617 37 HOH HOH . 
P 5 HOH A 18 618 31 HOH HOH . 
P 5 HOH A 19 619 43 HOH HOH . 
P 5 HOH A 20 620 54 HOH HOH . 
P 5 HOH A 21 621 57 HOH HOH . 
P 5 HOH A 22 622 48 HOH HOH . 
P 5 HOH A 23 623 5 HOH HOH . 
P 5 HOH A 24 624 40 HOH HOH . 
P 5 HOH A 25 625 2 HOH HOH . 
P 5 HOH A 26 626 26 HOH HOH . 
P 5 HOH A 27 627 78 HOH HOH . 
P 5 HOH A 28 628 6 HOH HOH . 
P 5 HOH A 29 629 68 HOH HOH . 
P 5 HOH A 30 630 27 HOH HOH . 
P 5 HOH A 31 631 74 HOH HOH . 
P 5 HOH A 32 632 29 HOH HOH . 
P 5 HOH A 33 633 76 HOH HOH . 
P 5 HOH A 34 634 4 HOH HOH . 
P 5 HOH A 35 635 73 HOH HOH . 
P 5 HOH A 36 636 81 HOH HOH . 
P 5 HOH A 37 637 41 HOH HOH . 
P 5 HOH A 38 638 50 HOH HOH . 
P 5 HOH A 39 639 60 HOH HOH . 
P 5 HOH A 40 640 65 HOH HOH . 
P 5 HOH A 41 641 7 HOH HOH . 
P 5 HOH A 42 642 67 HOH HOH . 
P 5 HOH A 43 643 35 HOH HOH . 
P 5 HOH A 44 644 79 HOH HOH . 
P 5 HOH A 45 645 66 HOH HOH . 
P 5 HOH A 46 646 58 HOH HOH . 
P 5 HOH A 47 647 12 HOH HOH . 
P 5 HOH A 48 648 23 HOH HOH . 
P 5 HOH A 49 649 53 HOH HOH . 
P 5 HOH A 50 650 19 HOH HOH . 
P 5 HOH A 51 651 22 HOH HOH . 
P 5 HOH A 52 652 63 HOH HOH . 
P 5 HOH A 53 653 18 HOH HOH . 
P 5 HOH A 54 654 21 HOH HOH . 
P 5 HOH A 55 655 45 HOH HOH . 
P 5 HOH A 56 656 70 HOH HOH . 
P 5 HOH A 57 657 69 HOH HOH . 
P 5 HOH A 58 658 51 HOH HOH . 
P 5 HOH A 59 659 59 HOH HOH . 
P 5 HOH A 60 660 34 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         O 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -7.266 
_atom_site.Cartn_y               -28.417 
_atom_site.Cartn_z               29.672 
_atom_site.occupancy             0.99 
_atom_site.B_iso_or_equiv        64.69 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           514 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#