data_9DQ9 # _model_server_result.job_id N9R9DMlEh2200TRv98XzmA _model_server_result.datetime_utc '2025-07-14 20:47:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 9DQ9 # _exptl.entry_id 9DQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DQ9 _cell.length_a 80.528 _cell.length_b 90.348 _cell.length_c 167.361 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 K N N ? 4 N N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 161 P ASP 161 1_555 G CA CA . P CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc2 A OD1 ASP 161 P ASP 161 1_555 G CA CA . P CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A OD2 ASP 161 P ASP 161 1_555 K CA CA . A CA 404 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc4 A OD1 ASN 164 P ASN 164 1_555 G CA CA . P CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc5 B O ASP 161 A ASP 161 1_555 J CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc6 B OD1 ASP 161 A ASP 161 1_555 J CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc7 B OD1 ASN 164 A ASN 164 1_555 J CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 B OE2 GLU 209 A GLU 209 1_555 K CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc9 J CA CA . A CA 403 1_555 S O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc10 C OD2 ASP 96 B ASP 96 1_555 Q CA CA . C CA 403 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc11 C O ASP 161 B ASP 161 1_555 N CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc12 C OD1 ASP 161 B ASP 161 1_555 N CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc13 C OD1 ASN 164 B ASN 164 1_555 N CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc14 D O ASP 161 C ASP 161 1_555 Q CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc15 D OD1 ASP 161 C ASP 161 1_555 Q CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc16 D OD1 ASN 164 C ASN 164 1_555 Q CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9DQ9 _atom_sites.fract_transf_matrix[1][1] 0.012418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 6V0 P 1 401 401 6V0 NAD . F 3 OXM P 1 402 402 OXM OXA . G 4 CA P 1 403 3 CA CA . H 2 6V0 A 1 401 401 6V0 NAD . I 3 OXM A 1 402 402 OXM OXA . J 4 CA A 1 403 1 CA CA . K 4 CA A 1 404 5 CA CA . L 5 NAD B 1 401 401 NAD NAD . M 3 OXM B 1 402 402 OXM OXA . N 4 CA B 1 403 6 CA CA . O 5 NAD C 1 401 401 NAD NAD . P 3 OXM C 1 402 402 OXM OXA . Q 4 CA C 1 403 2 CA CA . R 6 HOH P 1 501 88 HOH HOH . R 6 HOH P 2 502 15 HOH HOH . R 6 HOH P 3 503 67 HOH HOH . R 6 HOH P 4 504 161 HOH HOH . R 6 HOH P 5 505 41 HOH HOH . R 6 HOH P 6 506 149 HOH HOH . R 6 HOH P 7 507 69 HOH HOH . R 6 HOH P 8 508 81 HOH HOH . R 6 HOH P 9 509 109 HOH HOH . R 6 HOH P 10 510 25 HOH HOH . R 6 HOH P 11 511 1 HOH HOH . R 6 HOH P 12 512 20 HOH HOH . R 6 HOH P 13 513 124 HOH HOH . R 6 HOH P 14 514 56 HOH HOH . R 6 HOH P 15 515 40 HOH HOH . R 6 HOH P 16 516 61 HOH HOH . R 6 HOH P 17 517 30 HOH HOH . R 6 HOH P 18 518 32 HOH HOH . R 6 HOH P 19 519 64 HOH HOH . R 6 HOH P 20 520 62 HOH HOH . R 6 HOH P 21 521 28 HOH HOH . R 6 HOH P 22 522 166 HOH HOH . R 6 HOH P 23 523 96 HOH HOH . R 6 HOH P 24 524 57 HOH HOH . R 6 HOH P 25 525 126 HOH HOH . R 6 HOH P 26 526 123 HOH HOH . R 6 HOH P 27 527 158 HOH HOH . R 6 HOH P 28 528 11 HOH HOH . R 6 HOH P 29 529 152 HOH HOH . R 6 HOH P 30 530 99 HOH HOH . R 6 HOH P 31 531 107 HOH HOH . R 6 HOH P 32 532 63 HOH HOH . R 6 HOH P 33 533 167 HOH HOH . S 6 HOH A 1 501 68 HOH HOH . S 6 HOH A 2 502 49 HOH HOH . S 6 HOH A 3 503 79 HOH HOH . S 6 HOH A 4 504 36 HOH HOH . S 6 HOH A 5 505 24 HOH HOH . S 6 HOH A 6 506 108 HOH HOH . S 6 HOH A 7 507 97 HOH HOH . S 6 HOH A 8 508 142 HOH HOH . S 6 HOH A 9 509 144 HOH HOH . S 6 HOH A 10 510 127 HOH HOH . S 6 HOH A 11 511 9 HOH HOH . S 6 HOH A 12 512 4 HOH HOH . S 6 HOH A 13 513 153 HOH HOH . S 6 HOH A 14 514 71 HOH HOH . S 6 HOH A 15 515 140 HOH HOH . S 6 HOH A 16 516 90 HOH HOH . S 6 HOH A 17 517 44 HOH HOH . S 6 HOH A 18 518 70 HOH HOH . S 6 HOH A 19 519 87 HOH HOH . S 6 HOH A 20 520 73 HOH HOH . S 6 HOH A 21 521 22 HOH HOH . S 6 HOH A 22 522 19 HOH HOH . S 6 HOH A 23 523 121 HOH HOH . S 6 HOH A 24 524 150 HOH HOH . S 6 HOH A 25 525 34 HOH HOH . S 6 HOH A 26 526 80 HOH HOH . S 6 HOH A 27 527 120 HOH HOH . S 6 HOH A 28 528 157 HOH HOH . S 6 HOH A 29 529 42 HOH HOH . S 6 HOH A 30 530 132 HOH HOH . S 6 HOH A 31 531 146 HOH HOH . S 6 HOH A 32 532 117 HOH HOH . S 6 HOH A 33 533 50 HOH HOH . S 6 HOH A 34 534 58 HOH HOH . S 6 HOH A 35 535 143 HOH HOH . S 6 HOH A 36 536 51 HOH HOH . S 6 HOH A 37 537 122 HOH HOH . S 6 HOH A 38 538 155 HOH HOH . S 6 HOH A 39 539 65 HOH HOH . S 6 HOH A 40 540 128 HOH HOH . S 6 HOH A 41 541 104 HOH HOH . S 6 HOH A 42 542 77 HOH HOH . S 6 HOH A 43 543 53 HOH HOH . S 6 HOH A 44 544 163 HOH HOH . S 6 HOH A 45 545 141 HOH HOH . S 6 HOH A 46 546 178 HOH HOH . S 6 HOH A 47 547 176 HOH HOH . S 6 HOH A 48 548 131 HOH HOH . S 6 HOH A 49 549 172 HOH HOH . S 6 HOH A 50 550 171 HOH HOH . S 6 HOH A 51 551 136 HOH HOH . T 6 HOH B 1 501 91 HOH HOH . T 6 HOH B 2 502 116 HOH HOH . T 6 HOH B 3 503 95 HOH HOH . T 6 HOH B 4 504 98 HOH HOH . T 6 HOH B 5 505 66 HOH HOH . T 6 HOH B 6 506 83 HOH HOH . T 6 HOH B 7 507 5 HOH HOH . T 6 HOH B 8 508 82 HOH HOH . T 6 HOH B 9 509 84 HOH HOH . T 6 HOH B 10 510 105 HOH HOH . T 6 HOH B 11 511 156 HOH HOH . T 6 HOH B 12 512 52 HOH HOH . T 6 HOH B 13 513 26 HOH HOH . T 6 HOH B 14 514 76 HOH HOH . T 6 HOH B 15 515 29 HOH HOH . T 6 HOH B 16 516 23 HOH HOH . T 6 HOH B 17 517 111 HOH HOH . T 6 HOH B 18 518 13 HOH HOH . T 6 HOH B 19 519 10 HOH HOH . T 6 HOH B 20 520 101 HOH HOH . T 6 HOH B 21 521 60 HOH HOH . T 6 HOH B 22 522 113 HOH HOH . T 6 HOH B 23 523 55 HOH HOH . T 6 HOH B 24 524 103 HOH HOH . T 6 HOH B 25 525 39 HOH HOH . T 6 HOH B 26 526 43 HOH HOH . T 6 HOH B 27 527 170 HOH HOH . T 6 HOH B 28 528 168 HOH HOH . T 6 HOH B 29 529 154 HOH HOH . U 6 HOH C 1 501 8 HOH HOH . U 6 HOH C 2 502 138 HOH HOH . U 6 HOH C 3 503 2 HOH HOH . U 6 HOH C 4 504 38 HOH HOH . U 6 HOH C 5 505 100 HOH HOH . U 6 HOH C 6 506 17 HOH HOH . U 6 HOH C 7 507 14 HOH HOH . U 6 HOH C 8 508 74 HOH HOH . U 6 HOH C 9 509 46 HOH HOH . U 6 HOH C 10 510 118 HOH HOH . U 6 HOH C 11 511 135 HOH HOH . U 6 HOH C 12 512 48 HOH HOH . U 6 HOH C 13 513 75 HOH HOH . U 6 HOH C 14 514 47 HOH HOH . U 6 HOH C 15 515 45 HOH HOH . U 6 HOH C 16 516 3 HOH HOH . U 6 HOH C 17 517 12 HOH HOH . U 6 HOH C 18 518 148 HOH HOH . U 6 HOH C 19 519 115 HOH HOH . U 6 HOH C 20 520 59 HOH HOH . U 6 HOH C 21 521 133 HOH HOH . U 6 HOH C 22 522 27 HOH HOH . U 6 HOH C 23 523 110 HOH HOH . U 6 HOH C 24 524 18 HOH HOH . U 6 HOH C 25 525 130 HOH HOH . U 6 HOH C 26 526 16 HOH HOH . U 6 HOH C 27 527 134 HOH HOH . U 6 HOH C 28 528 35 HOH HOH . U 6 HOH C 29 529 54 HOH HOH . U 6 HOH C 30 530 37 HOH HOH . U 6 HOH C 31 531 7 HOH HOH . U 6 HOH C 32 532 31 HOH HOH . U 6 HOH C 33 533 33 HOH HOH . U 6 HOH C 34 534 151 HOH HOH . U 6 HOH C 35 535 78 HOH HOH . U 6 HOH C 36 536 174 HOH HOH . U 6 HOH C 37 537 181 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -1.491 _atom_site.Cartn_y 21.049 _atom_site.Cartn_z -35.948 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #