data_9DQQ
#
_model_server_result.job_id            qU6XgxJ9LkDEQe1qpji4Dg 
_model_server_result.datetime_utc      '2025-02-26 21:27:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9dqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    9DQQ 
#
_exptl.entry_id    9DQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.949 
_cell.angle_gamma         90 
_cell.entry_id            9DQQ 
_cell.length_a            96.871 
_cell.length_b            43.616 
_cell.length_c            126.201 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9DQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 157 A HIS 157 1_555 D FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc2 A OD1 ASP 159 A ASP 159 1_555 D FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 A OG1 THR 195 A THR 195 1_555 E FE FE . A FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc4 A OD2 ASP 199 A ASP 199 1_555 E FE FE . A FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc5 A NE2 HIS 210 A HIS 210 1_555 D FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc6 C O2 AKG . A AKG 301 1_555 D FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc7 C O5 AKG . A AKG 301 1_555 D FE FE . A FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc8 D FE FE . A FE 302 1_555 H O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc9 E FE FE . A FE 303 1_555 B NH1 ARG 67 B ARG 67 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc10 B OD1 ASP 159 B ASP 159 1_555 G FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc11 B OD2 ASP 159 B ASP 159 1_555 G FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc12 B NE2 HIS 210 B HIS 210 1_555 G FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 F O2 AKG . B AKG 301 1_555 G FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc14 F O5 AKG . B AKG 301 1_555 G FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     9DQQ 
_atom_sites.fract_transf_matrix[1][1]    0.010323 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003146 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022927 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AKG A 1 301 301 AKG AKG . 
D 3 FE A 1 302 302 FE FE . 
E 3 FE A 1 303 303 FE FE . 
F 2 AKG B 1 301 302 AKG AKG . 
G 3 FE B 1 302 304 FE FE . 
H 4 HOH A 1 401 16 HOH HOH . 
H 4 HOH A 2 402 527 HOH HOH . 
H 4 HOH A 3 403 401 HOH HOH . 
H 4 HOH A 4 404 253 HOH HOH . 
H 4 HOH A 5 405 503 HOH HOH . 
H 4 HOH A 6 406 530 HOH HOH . 
H 4 HOH A 7 407 301 HOH HOH . 
H 4 HOH A 8 408 123 HOH HOH . 
H 4 HOH A 9 409 219 HOH HOH . 
H 4 HOH A 10 410 26 HOH HOH . 
H 4 HOH A 11 411 332 HOH HOH . 
H 4 HOH A 12 412 19 HOH HOH . 
H 4 HOH A 13 413 31 HOH HOH . 
H 4 HOH A 14 414 162 HOH HOH . 
H 4 HOH A 15 415 610 HOH HOH . 
H 4 HOH A 16 416 615 HOH HOH . 
H 4 HOH A 17 417 472 HOH HOH . 
H 4 HOH A 18 418 1 HOH HOH . 
H 4 HOH A 19 419 10 HOH HOH . 
H 4 HOH A 20 420 5 HOH HOH . 
H 4 HOH A 21 421 29 HOH HOH . 
H 4 HOH A 22 422 35 HOH HOH . 
H 4 HOH A 23 423 246 HOH HOH . 
H 4 HOH A 24 424 256 HOH HOH . 
H 4 HOH A 25 425 25 HOH HOH . 
H 4 HOH A 26 426 122 HOH HOH . 
H 4 HOH A 27 427 192 HOH HOH . 
H 4 HOH A 28 428 78 HOH HOH . 
H 4 HOH A 29 429 20 HOH HOH . 
H 4 HOH A 30 430 36 HOH HOH . 
H 4 HOH A 31 431 573 HOH HOH . 
H 4 HOH A 32 432 3 HOH HOH . 
H 4 HOH A 33 433 8 HOH HOH . 
H 4 HOH A 34 434 631 HOH HOH . 
H 4 HOH A 35 435 34 HOH HOH . 
H 4 HOH A 36 436 381 HOH HOH . 
H 4 HOH A 37 437 41 HOH HOH . 
H 4 HOH A 38 438 17 HOH HOH . 
H 4 HOH A 39 439 13 HOH HOH . 
H 4 HOH A 40 440 47 HOH HOH . 
H 4 HOH A 41 441 213 HOH HOH . 
H 4 HOH A 42 442 105 HOH HOH . 
H 4 HOH A 43 443 257 HOH HOH . 
H 4 HOH A 44 444 22 HOH HOH . 
H 4 HOH A 45 445 117 HOH HOH . 
H 4 HOH A 46 446 313 HOH HOH . 
H 4 HOH A 47 447 536 HOH HOH . 
H 4 HOH A 48 448 44 HOH HOH . 
H 4 HOH A 49 449 453 HOH HOH . 
H 4 HOH A 50 450 588 HOH HOH . 
H 4 HOH A 51 451 18 HOH HOH . 
H 4 HOH A 52 452 533 HOH HOH . 
H 4 HOH A 53 453 307 HOH HOH . 
H 4 HOH A 54 454 103 HOH HOH . 
H 4 HOH A 55 455 30 HOH HOH . 
H 4 HOH A 56 456 75 HOH HOH . 
H 4 HOH A 57 457 27 HOH HOH . 
H 4 HOH A 58 458 547 HOH HOH . 
H 4 HOH A 59 459 525 HOH HOH . 
H 4 HOH A 60 460 539 HOH HOH . 
H 4 HOH A 61 461 114 HOH HOH . 
H 4 HOH A 62 462 106 HOH HOH . 
H 4 HOH A 63 463 145 HOH HOH . 
H 4 HOH A 64 464 351 HOH HOH . 
H 4 HOH A 65 465 210 HOH HOH . 
H 4 HOH A 66 466 365 HOH HOH . 
H 4 HOH A 67 467 268 HOH HOH . 
H 4 HOH A 68 468 622 HOH HOH . 
H 4 HOH A 69 469 238 HOH HOH . 
H 4 HOH A 70 470 98 HOH HOH . 
H 4 HOH A 71 471 421 HOH HOH . 
H 4 HOH A 72 472 366 HOH HOH . 
H 4 HOH A 73 473 165 HOH HOH . 
H 4 HOH A 74 474 11 HOH HOH . 
H 4 HOH A 75 475 148 HOH HOH . 
H 4 HOH A 76 476 88 HOH HOH . 
H 4 HOH A 77 477 273 HOH HOH . 
H 4 HOH A 78 478 208 HOH HOH . 
H 4 HOH A 79 479 598 HOH HOH . 
H 4 HOH A 80 480 416 HOH HOH . 
H 4 HOH A 81 481 585 HOH HOH . 
H 4 HOH A 82 482 523 HOH HOH . 
H 4 HOH A 83 483 59 HOH HOH . 
I 4 HOH B 1 401 550 HOH HOH . 
I 4 HOH B 2 402 9 HOH HOH . 
I 4 HOH B 3 403 553 HOH HOH . 
I 4 HOH B 4 404 438 HOH HOH . 
I 4 HOH B 5 405 501 HOH HOH . 
I 4 HOH B 6 406 340 HOH HOH . 
I 4 HOH B 7 407 205 HOH HOH . 
I 4 HOH B 8 408 126 HOH HOH . 
I 4 HOH B 9 409 6 HOH HOH . 
I 4 HOH B 10 410 51 HOH HOH . 
I 4 HOH B 11 411 626 HOH HOH . 
I 4 HOH B 12 412 493 HOH HOH . 
I 4 HOH B 13 413 317 HOH HOH . 
I 4 HOH B 14 414 222 HOH HOH . 
I 4 HOH B 15 415 182 HOH HOH . 
I 4 HOH B 16 416 620 HOH HOH . 
I 4 HOH B 17 417 245 HOH HOH . 
I 4 HOH B 18 418 135 HOH HOH . 
I 4 HOH B 19 419 131 HOH HOH . 
I 4 HOH B 20 420 133 HOH HOH . 
I 4 HOH B 21 421 128 HOH HOH . 
I 4 HOH B 22 422 578 HOH HOH . 
I 4 HOH B 23 423 448 HOH HOH . 
I 4 HOH B 24 424 152 HOH HOH . 
I 4 HOH B 25 425 628 HOH HOH . 
I 4 HOH B 26 426 143 HOH HOH . 
I 4 HOH B 27 427 605 HOH HOH . 
I 4 HOH B 28 428 387 HOH HOH . 
I 4 HOH B 29 429 565 HOH HOH . 
I 4 HOH B 30 430 541 HOH HOH . 
I 4 HOH B 31 431 110 HOH HOH . 
I 4 HOH B 32 432 518 HOH HOH . 
I 4 HOH B 33 433 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . F 2 34.33 6.402 6.875 1 74.36 ? C1 AKG 301 B 1 
HETATM 2 O O1 AKG . . . F 2 33.752 5.451 6.305 1 69.48 ? O1 AKG 301 B 1 
HETATM 3 O O2 AKG . . . F 2 33.93 7.58 7 1 62.43 ? O2 AKG 301 B 1 
HETATM 4 C C2 AKG . . . F 2 35.737 6.094 7.509 1 78.49 ? C2 AKG 301 B 1 
HETATM 5 O O5 AKG . . . F 2 36.384 6.994 8.011 1 67.97 ? O5 AKG 301 B 1 
HETATM 6 C C3 AKG . . . F 2 36.239 4.666 7.455 1 73.06 ? C3 AKG 301 B 1 
HETATM 7 C C4 AKG . . . F 2 37.397 4.344 8.387 1 66.03 ? C4 AKG 301 B 1 
HETATM 8 C C5 AKG . . . F 2 38.108 3.002 8.111 1 72.95 ? C5 AKG 301 B 1 
HETATM 9 O O3 AKG . . . F 2 39.266 2.841 8.571 1 75.33 ? O3 AKG 301 B 1 
HETATM 10 O O4 AKG . . . F 2 37.449 2.164 7.444 1 65.45 ? O4 AKG 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#