data_9DRX # _model_server_result.job_id olwxP6QHbugZNWp8mzBS6w _model_server_result.datetime_utc '2025-07-03 17:13:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9drx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":402}' # _entry.id 9DRX # _exptl.entry_id 9DRX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.091 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-6-(2,3-dichlorophenyl)-1,2,4-triazine-3,5-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DRX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id S _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide 9 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 6 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 8 ? 8 5 4 MAN MAN C1 O1 . O2 HO2 . sing 9 ? 8 6 5 MAN MAN C1 O1 . O2 HO2 . sing 10 ? 8 7 3 MAN BMA C1 O1 . O6 HO6 . sing 11 ? 8 8 7 MAN MAN C1 O1 . O3 HO3 . sing 12 ? 8 9 7 MAN MAN C1 O1 . O6 HO6 . sing 13 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n J NAG 1 F 1 NAG D 401 NAG 6 n J NAG 2 F 2 NAG D 402 NAG 6 n J NAG 3 F 3 NAG D 403 NAG 7 n K NAG 1 G 1 NAG F 1 NAG 7 n K NAG 2 G 2 NAG F 2 NAG 7 n K BMA 3 G 3 BMA F 3 BMA 8 n L NAG 1 H 1 NAG G 1 NAG 8 n L NAG 2 H 2 NAG G 2 NAG 8 n L BMA 3 H 3 BMA G 3 BMA 8 n L MAN 4 H 4 MAN G 4 MAN 8 n L MAN 5 H 5 MAN G 5 MAN 8 n L MAN 6 H 6 MAN G 6 MAN 8 n L MAN 7 H 7 MAN G 11 MAN 8 n L MAN 8 H 8 MAN G 10 MAN 8 n L MAN 9 H 9 MAN G 12 MAN 7 n M NAG 1 M 1 NAG H 1 NAG 7 n M NAG 2 M 2 NAG H 2 NAG 7 n M BMA 3 M 3 BMA H 3 BMA 9 n N NAG 1 N 1 NAG M 1 NAG 9 n N NAG 2 N 2 NAG M 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 136 A CYS 136 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 139 B CYS 139 1_555 B SG CYS 153 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 136 C CYS 136 1_555 C SG CYS 150 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 D SG CYS 139 D CYS 139 1_555 D SG CYS 153 D CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 188 E CYS 151 1_555 E SG CYS 202 E CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf6 F SG CYS 23 I CYS 23 1_555 F SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 G SG CYS 22 J CYS 22 1_555 G SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 H SG CYS 23 L CYS 23 1_555 H SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 I SG CYS 22 K CYS 22 1_555 I SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 80 A ASN 80 1_555 O C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale2 A ND2 ASN 149 A ASN 149 1_555 K C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 111 B ASN 111 1_555 L C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 C ND2 ASN 80 C ASN 80 1_555 Q C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.548 ? covale ? covale5 C ND2 ASN 149 C ASN 149 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 D ND2 ASN 111 D ASN 111 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale7 E ND2 ASN 245 E ASN 208 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 J O4 NAG . F NAG 2 1_555 J C1 NAG . F NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 K O4 NAG . G NAG 1 1_555 K C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale11 K O4 NAG . G NAG 2 1_555 K C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 L O4 NAG . H NAG 1 1_555 L C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 L O4 NAG . H NAG 2 1_555 L C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale14 L O3 BMA . H BMA 3 1_555 L C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale15 L O6 BMA . H BMA 3 1_555 L C1 MAN . H MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale16 L O2 MAN . H MAN 4 1_555 L C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 L O2 MAN . H MAN 5 1_555 L C1 MAN . H MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale18 L O3 MAN . H MAN 7 1_555 L C1 MAN . H MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale19 L O6 MAN . H MAN 7 1_555 L C1 MAN . H MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale20 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale21 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C9 H7 Cl2 N5' _chem_comp.formula_weight 256.091 _chem_comp.id IYJ _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-6-(2,3-dichlorophenyl)-1,2,4-triazine-3,5-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N06 N03 IYJ doub 210 n y N06 C16 IYJ sing 211 n y N03 C09 IYJ sing 212 n y N07 C16 IYJ sing 213 n n C16 N04 IYJ doub 214 n y CL01 C10 IYJ sing 215 n n C09 C08 IYJ sing 216 n n C09 C12 IYJ doub 217 n y C10 C08 IYJ doub 218 n y C10 C13 IYJ sing 219 n y C08 C11 IYJ sing 220 n y CL02 C13 IYJ sing 221 n n C13 C15 IYJ doub 222 n y C11 C14 IYJ doub 223 n y N04 C12 IYJ sing 224 n y C15 C14 IYJ sing 225 n y C12 N05 IYJ sing 226 n n C15 H1 IYJ sing 227 n n C11 H2 IYJ sing 228 n n C14 H3 IYJ sing 229 n n N05 H4 IYJ sing 230 n n N05 H5 IYJ sing 231 n n N07 H6 IYJ sing 232 n n N07 H7 IYJ sing 233 n n # _atom_sites.entry_id 9DRX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 10 NAG A 1 401 404 NAG NAG . P 11 ABU A 1 402 501 ABU ABU . Q 10 NAG C 1 401 404 NAG NAG . R 11 ABU D 1 401 552 ABU ABU . S 12 IYJ D 1 402 404 IYJ IYJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 IYJ . . . S 12 132.867 96.201 140.54 1 146.9 ? C10 IYJ 402 D 1 HETATM 2 C C13 IYJ . . . S 12 131.572 96.528 140.914 1 146.88 ? C13 IYJ 402 D 1 HETATM 3 C C15 IYJ . . . S 12 131.117 96.263 142.19 1 146.18 ? C15 IYJ 402 D 1 HETATM 4 C C08 IYJ . . . S 12 133.731 95.61 141.459 1 144.72 ? C08 IYJ 402 D 1 HETATM 5 C C09 IYJ . . . S 12 135.137 95.293 141.092 1 146.32 ? C09 IYJ 402 D 1 HETATM 6 C C11 IYJ . . . S 12 133.267 95.344 142.747 1 143.59 ? C11 IYJ 402 D 1 HETATM 7 C C12 IYJ . . . S 12 135.483 94.222 140.195 1 146.52 ? C12 IYJ 402 D 1 HETATM 8 C C14 IYJ . . . S 12 131.97 95.673 143.106 1 144.87 ? C14 IYJ 402 D 1 HETATM 9 C C16 IYJ . . . S 12 137.673 94.7 140.614 1 146.99 ? C16 IYJ 402 D 1 HETATM 10 N N03 IYJ . . . S 12 136.093 96.008 141.671 1 146.21 ? N03 IYJ 402 D 1 HETATM 11 N N04 IYJ . . . S 12 136.77 93.937 139.971 1 145.46 ? N04 IYJ 402 D 1 HETATM 12 N N05 IYJ . . . S 12 134.552 93.495 139.572 1 148.27 ? N05 IYJ 402 D 1 HETATM 13 N N06 IYJ . . . S 12 137.386 95.721 141.446 1 146.05 ? N06 IYJ 402 D 1 HETATM 14 N N07 IYJ . . . S 12 138.961 94.412 140.423 1 146.05 ? N07 IYJ 402 D 1 HETATM 15 CL CL01 IYJ . . . S 12 133.408 96.509 138.934 1 153.66 ? CL01 IYJ 402 D 1 HETATM 16 CL CL02 IYJ . . . S 12 130.521 97.339 139.808 1 153.39 ? CL02 IYJ 402 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #