data_9DTK # _model_server_result.job_id Zry8Wp6mxA58LT1csBxKNQ _model_server_result.datetime_utc '2025-02-24 01:00:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9DTK # _exptl.entry_id 9DTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.09 _cell.angle_gamma 90 _cell.entry_id 9DTK _cell.length_a 120.032 _cell.length_b 37.533 _cell.length_c 77.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 158 n n PA O2A FAD sing 159 n n PA O5B FAD sing 160 n n PA O3P FAD sing 161 n n O2A HOA2 FAD sing 162 n n O5B C5B FAD sing 163 n n C5B C4B FAD sing 164 n n C5B H51A FAD sing 165 n n C5B H52A FAD sing 166 n n C4B O4B FAD sing 167 n n C4B C3B FAD sing 168 n n C4B H4B FAD sing 169 n n O4B C1B FAD sing 170 n n C3B O3B FAD sing 171 n n C3B C2B FAD sing 172 n n C3B H3B FAD sing 173 n n O3B HO3A FAD sing 174 n n C2B O2B FAD sing 175 n n C2B C1B FAD sing 176 n n C2B H2B FAD sing 177 n n O2B HO2A FAD sing 178 n n C1B N9A FAD sing 179 n n C1B H1B FAD sing 180 n n N9A C8A FAD sing 181 n y N9A C4A FAD sing 182 n y C8A N7A FAD doub 183 n y C8A H8A FAD sing 184 n n N7A C5A FAD sing 185 n y C5A C6A FAD sing 186 n y C5A C4A FAD doub 187 n y C6A N6A FAD sing 188 n n C6A N1A FAD doub 189 n y N6A H61A FAD sing 190 n n N6A H62A FAD sing 191 n n N1A C2A FAD sing 192 n y C2A N3A FAD doub 193 n y C2A H2A FAD sing 194 n n N3A C4A FAD sing 195 n y N1 C2 FAD sing 196 n n N1 C10 FAD doub 197 n n C2 O2 FAD doub 198 n n C2 N3 FAD sing 199 n n N3 C4 FAD sing 200 n n N3 HN3 FAD sing 201 n n C4 O4 FAD doub 202 n n C4 C4X FAD sing 203 n n C4X N5 FAD doub 204 n n C4X C10 FAD sing 205 n n N5 C5X FAD sing 206 n n C5X C6 FAD doub 207 n y C5X C9A FAD sing 208 n y C6 C7 FAD sing 209 n y C6 H6 FAD sing 210 n n C7 C7M FAD sing 211 n n C7 C8 FAD doub 212 n y C7M HM71 FAD sing 213 n n C7M HM72 FAD sing 214 n n C7M HM73 FAD sing 215 n n C8 C8M FAD sing 216 n n C8 C9 FAD sing 217 n y C8M HM81 FAD sing 218 n n C8M HM82 FAD sing 219 n n C8M HM83 FAD sing 220 n n C9 C9A FAD doub 221 n y C9 H9 FAD sing 222 n n C9A N10 FAD sing 223 n n N10 C10 FAD sing 224 n n N10 C1' FAD sing 225 n n C1' C2' FAD sing 226 n n C1' "H1'1" FAD sing 227 n n C1' "H1'2" FAD sing 228 n n C2' O2' FAD sing 229 n n C2' C3' FAD sing 230 n n C2' H2' FAD sing 231 n n O2' HO2' FAD sing 232 n n C3' O3' FAD sing 233 n n C3' C4' FAD sing 234 n n C3' H3' FAD sing 235 n n O3' HO3' FAD sing 236 n n C4' O4' FAD sing 237 n n C4' C5' FAD sing 238 n n C4' H4' FAD sing 239 n n O4' HO4' FAD sing 240 n n C5' O5' FAD sing 241 n n C5' "H5'1" FAD sing 242 n n C5' "H5'2" FAD sing 243 n n O5' P FAD sing 244 n n P O1P FAD doub 245 n n P O2P FAD sing 246 n n P O3P FAD sing 247 n n O2P HOP2 FAD sing 248 n n # _atom_sites.entry_id 9DTK _atom_sites.fract_transf_matrix[1][1] 0.008331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 403 SO4 SO4 . C 3 FAD A 1 402 401 FAD FAD . D 4 EPU A 1 403 402 EPU EPU . E 5 HOH A 1 501 38 HOH HOH . E 5 HOH A 2 502 86 HOH HOH . E 5 HOH A 3 503 14 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 40 HOH HOH . E 5 HOH A 6 506 91 HOH HOH . E 5 HOH A 7 507 49 HOH HOH . E 5 HOH A 8 508 54 HOH HOH . E 5 HOH A 9 509 52 HOH HOH . E 5 HOH A 10 510 39 HOH HOH . E 5 HOH A 11 511 73 HOH HOH . E 5 HOH A 12 512 37 HOH HOH . E 5 HOH A 13 513 62 HOH HOH . E 5 HOH A 14 514 13 HOH HOH . E 5 HOH A 15 515 8 HOH HOH . E 5 HOH A 16 516 4 HOH HOH . E 5 HOH A 17 517 83 HOH HOH . E 5 HOH A 18 518 34 HOH HOH . E 5 HOH A 19 519 64 HOH HOH . E 5 HOH A 20 520 68 HOH HOH . E 5 HOH A 21 521 53 HOH HOH . E 5 HOH A 22 522 3 HOH HOH . E 5 HOH A 23 523 32 HOH HOH . E 5 HOH A 24 524 6 HOH HOH . E 5 HOH A 25 525 45 HOH HOH . E 5 HOH A 26 526 24 HOH HOH . E 5 HOH A 27 527 78 HOH HOH . E 5 HOH A 28 528 1 HOH HOH . E 5 HOH A 29 529 35 HOH HOH . E 5 HOH A 30 530 33 HOH HOH . E 5 HOH A 31 531 44 HOH HOH . E 5 HOH A 32 532 69 HOH HOH . E 5 HOH A 33 533 61 HOH HOH . E 5 HOH A 34 534 75 HOH HOH . E 5 HOH A 35 535 2 HOH HOH . E 5 HOH A 36 536 31 HOH HOH . E 5 HOH A 37 537 42 HOH HOH . E 5 HOH A 38 538 85 HOH HOH . E 5 HOH A 39 539 22 HOH HOH . E 5 HOH A 40 540 74 HOH HOH . E 5 HOH A 41 541 27 HOH HOH . E 5 HOH A 42 542 80 HOH HOH . E 5 HOH A 43 543 79 HOH HOH . E 5 HOH A 44 544 7 HOH HOH . E 5 HOH A 45 545 67 HOH HOH . E 5 HOH A 46 546 60 HOH HOH . E 5 HOH A 47 547 63 HOH HOH . E 5 HOH A 48 548 10 HOH HOH . E 5 HOH A 49 549 56 HOH HOH . E 5 HOH A 50 550 15 HOH HOH . E 5 HOH A 51 551 26 HOH HOH . E 5 HOH A 52 552 9 HOH HOH . E 5 HOH A 53 553 88 HOH HOH . E 5 HOH A 54 554 18 HOH HOH . E 5 HOH A 55 555 65 HOH HOH . E 5 HOH A 56 556 36 HOH HOH . E 5 HOH A 57 557 29 HOH HOH . E 5 HOH A 58 558 57 HOH HOH . E 5 HOH A 59 559 43 HOH HOH . E 5 HOH A 60 560 23 HOH HOH . E 5 HOH A 61 561 30 HOH HOH . E 5 HOH A 62 562 11 HOH HOH . E 5 HOH A 63 563 20 HOH HOH . E 5 HOH A 64 564 19 HOH HOH . E 5 HOH A 65 565 21 HOH HOH . E 5 HOH A 66 566 51 HOH HOH . E 5 HOH A 67 567 48 HOH HOH . E 5 HOH A 68 568 76 HOH HOH . E 5 HOH A 69 569 46 HOH HOH . E 5 HOH A 70 570 41 HOH HOH . E 5 HOH A 71 571 71 HOH HOH . E 5 HOH A 72 572 16 HOH HOH . E 5 HOH A 73 573 28 HOH HOH . E 5 HOH A 74 574 59 HOH HOH . E 5 HOH A 75 575 77 HOH HOH . E 5 HOH A 76 576 17 HOH HOH . E 5 HOH A 77 577 55 HOH HOH . E 5 HOH A 78 578 87 HOH HOH . E 5 HOH A 79 579 12 HOH HOH . E 5 HOH A 80 580 92 HOH HOH . E 5 HOH A 81 581 93 HOH HOH . E 5 HOH A 82 582 70 HOH HOH . E 5 HOH A 83 583 94 HOH HOH . E 5 HOH A 84 584 90 HOH HOH . E 5 HOH A 85 585 50 HOH HOH . E 5 HOH A 86 586 66 HOH HOH . E 5 HOH A 87 587 25 HOH HOH . E 5 HOH A 88 588 81 HOH HOH . E 5 HOH A 89 589 82 HOH HOH . E 5 HOH A 90 590 89 HOH HOH . E 5 HOH A 91 591 72 HOH HOH . E 5 HOH A 92 592 47 HOH HOH . E 5 HOH A 93 593 84 HOH HOH . E 5 HOH A 94 594 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 3 17.252 1.77 21.759 1 25.51 ? PA FAD 402 A 1 HETATM 2 O O1A FAD . . . C 3 16.863 1.081 23.013 1 19.25 ? O1A FAD 402 A 1 HETATM 3 O O2A FAD . . . C 3 18.31 2.869 21.911 1 35.11 ? O2A FAD 402 A 1 HETATM 4 O O5B FAD . . . C 3 17.697 0.726 20.68 1 38.09 ? O5B FAD 402 A 1 HETATM 5 C C5B FAD . . . C 3 16.895 -0.439 20.394 1 31.27 ? C5B FAD 402 A 1 HETATM 6 C C4B FAD . . . C 3 17.249 -0.964 19.026 1 34.63 ? C4B FAD 402 A 1 HETATM 7 O O4B FAD . . . C 3 16.904 0.023 18.027 1 28.57 ? O4B FAD 402 A 1 HETATM 8 C C3B FAD . . . C 3 18.732 -1.284 18.828 1 42.52 ? C3B FAD 402 A 1 HETATM 9 O O3B FAD . . . C 3 18.903 -2.534 18.17 1 42.22 ? O3B FAD 402 A 1 HETATM 10 C C2B FAD . . . C 3 19.23 -0.121 17.966 1 41.71 ? C2B FAD 402 A 1 HETATM 11 O O2B FAD . . . C 3 20.317 -0.496 17.128 1 46.93 ? O2B FAD 402 A 1 HETATM 12 C C1B FAD . . . C 3 17.986 0.176 17.138 1 39.46 ? C1B FAD 402 A 1 HETATM 13 N N9A FAD . . . C 3 17.953 1.521 16.58 1 22.86 ? N9A FAD 402 A 1 HETATM 14 C C8A FAD . . . C 3 17.581 2.683 17.203 1 22.43 ? C8A FAD 402 A 1 HETATM 15 N N7A FAD . . . C 3 17.664 3.747 16.439 1 36.21 ? N7A FAD 402 A 1 HETATM 16 C C5A FAD . . . C 3 18.127 3.247 15.23 1 19.77 ? C5A FAD 402 A 1 HETATM 17 C C6A FAD . . . C 3 18.428 3.861 14 1 25.2 ? C6A FAD 402 A 1 HETATM 18 N N6A FAD . . . C 3 18.304 5.17 13.769 1 30.86 ? N6A FAD 402 A 1 HETATM 19 N N1A FAD . . . C 3 18.875 3.071 13.002 1 33.18 ? N1A FAD 402 A 1 HETATM 20 C C2A FAD . . . C 3 18.999 1.759 13.215 1 30.13 ? C2A FAD 402 A 1 HETATM 21 N N3A FAD . . . C 3 18.745 1.072 14.33 1 28.97 ? N3A FAD 402 A 1 HETATM 22 C C4A FAD . . . C 3 18.31 1.878 15.305 1 24.14 ? C4A FAD 402 A 1 HETATM 23 N N1 FAD . . . C 3 8.746 -2.194 23.305 1 36.76 ? N1 FAD 402 A 1 HETATM 24 C C2 FAD . . . C 3 7.703 -2.659 22.556 1 36.94 ? C2 FAD 402 A 1 HETATM 25 O O2 FAD . . . C 3 7.886 -3.254 21.489 1 40.97 ? O2 FAD 402 A 1 HETATM 26 N N3 FAD . . . C 3 6.403 -2.464 22.99 1 37.58 ? N3 FAD 402 A 1 HETATM 27 C C4 FAD . . . C 3 6.029 -1.826 24.152 1 29.54 ? C4 FAD 402 A 1 HETATM 28 O O4 FAD . . . C 3 4.839 -1.709 24.438 1 41.07 ? O4 FAD 402 A 1 HETATM 29 C C4X FAD . . . C 3 7.14 -1.334 24.941 1 34.19 ? C4X FAD 402 A 1 HETATM 30 N N5 FAD . . . C 3 6.872 -0.718 26.052 1 29.42 ? N5 FAD 402 A 1 HETATM 31 C C5X FAD . . . C 3 7.93 -0.249 26.809 1 34.66 ? C5X FAD 402 A 1 HETATM 32 C C6 FAD . . . C 3 7.652 0.414 28.003 1 35.09 ? C6 FAD 402 A 1 HETATM 33 C C7 FAD . . . C 3 8.676 0.905 28.805 1 37.21 ? C7 FAD 402 A 1 HETATM 34 C C7M FAD . . . C 3 8.333 1.619 30.086 1 41.83 ? C7M FAD 402 A 1 HETATM 35 C C8 FAD . . . C 3 10.012 0.734 28.405 1 37.2 ? C8 FAD 402 A 1 HETATM 36 C C8M FAD . . . C 3 11.147 1.255 29.248 1 31.48 ? C8M FAD 402 A 1 HETATM 37 C C9 FAD . . . C 3 10.292 0.072 27.213 1 35.9 ? C9 FAD 402 A 1 HETATM 38 C C9A FAD . . . C 3 9.265 -0.42 26.414 1 34.57 ? C9A FAD 402 A 1 HETATM 39 N N10 FAD . . . C 3 9.513 -1.089 25.196 1 32.75 ? N10 FAD 402 A 1 HETATM 40 C C10 FAD . . . C 3 8.468 -1.567 24.436 1 34.35 ? C10 FAD 402 A 1 HETATM 41 C C1' FAD . . . C 3 10.89 -1.318 24.727 1 32.95 ? C1' FAD 402 A 1 HETATM 42 C C2' FAD . . . C 3 11.448 -0.163 23.898 1 34.26 ? C2' FAD 402 A 1 HETATM 43 O O2' FAD . . . C 3 10.668 1.018 24.09 1 33.74 ? O2' FAD 402 A 1 HETATM 44 C C3' FAD . . . C 3 11.439 -0.552 22.418 1 23.89 ? C3' FAD 402 A 1 HETATM 45 O O3' FAD . . . C 3 12.186 -1.751 22.247 1 43.54 ? O3' FAD 402 A 1 HETATM 46 C C4' FAD . . . C 3 12.004 0.509 21.47 1 27.62 ? C4' FAD 402 A 1 HETATM 47 O O4' FAD . . . C 3 12.006 -0.022 20.144 1 45.64 ? O4' FAD 402 A 1 HETATM 48 C C5' FAD . . . C 3 13.401 0.975 21.822 1 33.43 ? C5' FAD 402 A 1 HETATM 49 O O5' FAD . . . C 3 13.538 2.363 21.452 1 30.77 ? O5' FAD 402 A 1 HETATM 50 P P FAD . . . C 3 14.823 3.189 21.832 1 23 ? P FAD 402 A 1 HETATM 51 O O1P FAD . . . C 3 14.72 4.587 21.213 1 32.37 ? O1P FAD 402 A 1 HETATM 52 O O2P FAD . . . C 3 15.06 3.153 23.296 1 22.56 ? O2P FAD 402 A 1 HETATM 53 O O3P FAD . . . C 3 15.977 2.416 21.074 1 34.93 ? O3P FAD 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 423 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #