data_9DTK # _model_server_result.job_id KRtxidYMEabEB6DaiQ2ywg _model_server_result.datetime_utc '2025-02-24 01:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dtk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 9DTK # _exptl.entry_id 9DTK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.09 _cell.angle_gamma 90 _cell.entry_id 9DTK _cell.length_a 120.032 _cell.length_b 37.533 _cell.length_c 77.902 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H29 N3 O19 P2' _chem_comp.formula_weight 677.4 _chem_comp.id EPU _chem_comp.mon_nstd_flag . _chem_comp.name 'URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ENOLPYRUVYL-URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1U C2U EPU sing 83 n n N1U C6U EPU sing 84 n n N1U C1D EPU sing 85 n n C2U N3U EPU sing 86 n n C2U O2U EPU doub 87 n n N3U C4U EPU sing 88 n n N3U HN3U EPU sing 89 n n C4U C5U EPU sing 90 n n C4U O4U EPU doub 91 n n C5U C6U EPU doub 92 n n C5U H5U EPU sing 93 n n C6U H6U EPU sing 94 n n C1D C2D EPU sing 95 n n C1D O4D EPU sing 96 n n C1D H1D EPU sing 97 n n C2D O2D EPU sing 98 n n C2D C3D EPU sing 99 n n C2D H2D EPU sing 100 n n O2D HO2U EPU sing 101 n n C3D C4D EPU sing 102 n n C3D O3D EPU sing 103 n n C3D H3D EPU sing 104 n n C4D O4D EPU sing 105 n n C4D C5D EPU sing 106 n n C4D H4D EPU sing 107 n n O3D HO3U EPU sing 108 n n C5D O5D EPU sing 109 n n C5D "H5'1" EPU sing 110 n n C5D "H5'2" EPU sing 111 n n O5D PA EPU sing 112 n n PA O1A EPU doub 113 n n PA O2A EPU sing 114 n n PA O3A EPU sing 115 n n O2A HOA2 EPU sing 116 n n O3A PB EPU sing 117 n n PB O1B EPU doub 118 n n PB O2B EPU sing 119 n n PB O1 EPU sing 120 n n O2B HOB2 EPU sing 121 n n C1 C2 EPU sing 122 n n C1 O1 EPU sing 123 n n C1 O5 EPU sing 124 n n C1 H1 EPU sing 125 n n C2 C3 EPU sing 126 n n C2 N2 EPU sing 127 n n C2 H2 EPU sing 128 n n C3 C4 EPU sing 129 n n C3 O3 EPU sing 130 n n C3 H3 EPU sing 131 n n C4 C5 EPU sing 132 n n C4 O4 EPU sing 133 n n C4 H4 EPU sing 134 n n C5 C6 EPU sing 135 n n C5 O5 EPU sing 136 n n C5 H5 EPU sing 137 n n C6 O6 EPU sing 138 n n C6 H61 EPU sing 139 n n C6 H62 EPU sing 140 n n C7 C8 EPU sing 141 n n C7 N2 EPU sing 142 n n C7 O7 EPU doub 143 n n C8 H81 EPU sing 144 n n C8 H82 EPU sing 145 n n C8 H83 EPU sing 146 n n N2 HN2 EPU sing 147 n n O3 C2E EPU sing 148 n n O4 HO4 EPU sing 149 n n O6 HO6 EPU sing 150 n n C1E O1E EPU doub 151 n n C1E O2E EPU sing 152 n n C1E C2E EPU sing 153 n n O2E HO2E EPU sing 154 n n C2E C3E EPU doub 155 n n C3E HE31 EPU sing 156 n n C3E HE32 EPU sing 157 n n # _atom_sites.entry_id 9DTK _atom_sites.fract_transf_matrix[1][1] 0.008331 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 403 SO4 SO4 . C 3 FAD A 1 402 401 FAD FAD . D 4 EPU A 1 403 402 EPU EPU . E 5 HOH A 1 501 38 HOH HOH . E 5 HOH A 2 502 86 HOH HOH . E 5 HOH A 3 503 14 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 40 HOH HOH . E 5 HOH A 6 506 91 HOH HOH . E 5 HOH A 7 507 49 HOH HOH . E 5 HOH A 8 508 54 HOH HOH . E 5 HOH A 9 509 52 HOH HOH . E 5 HOH A 10 510 39 HOH HOH . E 5 HOH A 11 511 73 HOH HOH . E 5 HOH A 12 512 37 HOH HOH . E 5 HOH A 13 513 62 HOH HOH . E 5 HOH A 14 514 13 HOH HOH . E 5 HOH A 15 515 8 HOH HOH . E 5 HOH A 16 516 4 HOH HOH . E 5 HOH A 17 517 83 HOH HOH . E 5 HOH A 18 518 34 HOH HOH . E 5 HOH A 19 519 64 HOH HOH . E 5 HOH A 20 520 68 HOH HOH . E 5 HOH A 21 521 53 HOH HOH . E 5 HOH A 22 522 3 HOH HOH . E 5 HOH A 23 523 32 HOH HOH . E 5 HOH A 24 524 6 HOH HOH . E 5 HOH A 25 525 45 HOH HOH . E 5 HOH A 26 526 24 HOH HOH . E 5 HOH A 27 527 78 HOH HOH . E 5 HOH A 28 528 1 HOH HOH . E 5 HOH A 29 529 35 HOH HOH . E 5 HOH A 30 530 33 HOH HOH . E 5 HOH A 31 531 44 HOH HOH . E 5 HOH A 32 532 69 HOH HOH . E 5 HOH A 33 533 61 HOH HOH . E 5 HOH A 34 534 75 HOH HOH . E 5 HOH A 35 535 2 HOH HOH . E 5 HOH A 36 536 31 HOH HOH . E 5 HOH A 37 537 42 HOH HOH . E 5 HOH A 38 538 85 HOH HOH . E 5 HOH A 39 539 22 HOH HOH . E 5 HOH A 40 540 74 HOH HOH . E 5 HOH A 41 541 27 HOH HOH . E 5 HOH A 42 542 80 HOH HOH . E 5 HOH A 43 543 79 HOH HOH . E 5 HOH A 44 544 7 HOH HOH . E 5 HOH A 45 545 67 HOH HOH . E 5 HOH A 46 546 60 HOH HOH . E 5 HOH A 47 547 63 HOH HOH . E 5 HOH A 48 548 10 HOH HOH . E 5 HOH A 49 549 56 HOH HOH . E 5 HOH A 50 550 15 HOH HOH . E 5 HOH A 51 551 26 HOH HOH . E 5 HOH A 52 552 9 HOH HOH . E 5 HOH A 53 553 88 HOH HOH . E 5 HOH A 54 554 18 HOH HOH . E 5 HOH A 55 555 65 HOH HOH . E 5 HOH A 56 556 36 HOH HOH . E 5 HOH A 57 557 29 HOH HOH . E 5 HOH A 58 558 57 HOH HOH . E 5 HOH A 59 559 43 HOH HOH . E 5 HOH A 60 560 23 HOH HOH . E 5 HOH A 61 561 30 HOH HOH . E 5 HOH A 62 562 11 HOH HOH . E 5 HOH A 63 563 20 HOH HOH . E 5 HOH A 64 564 19 HOH HOH . E 5 HOH A 65 565 21 HOH HOH . E 5 HOH A 66 566 51 HOH HOH . E 5 HOH A 67 567 48 HOH HOH . E 5 HOH A 68 568 76 HOH HOH . E 5 HOH A 69 569 46 HOH HOH . E 5 HOH A 70 570 41 HOH HOH . E 5 HOH A 71 571 71 HOH HOH . E 5 HOH A 72 572 16 HOH HOH . E 5 HOH A 73 573 28 HOH HOH . E 5 HOH A 74 574 59 HOH HOH . E 5 HOH A 75 575 77 HOH HOH . E 5 HOH A 76 576 17 HOH HOH . E 5 HOH A 77 577 55 HOH HOH . E 5 HOH A 78 578 87 HOH HOH . E 5 HOH A 79 579 12 HOH HOH . E 5 HOH A 80 580 92 HOH HOH . E 5 HOH A 81 581 93 HOH HOH . E 5 HOH A 82 582 70 HOH HOH . E 5 HOH A 83 583 94 HOH HOH . E 5 HOH A 84 584 90 HOH HOH . E 5 HOH A 85 585 50 HOH HOH . E 5 HOH A 86 586 66 HOH HOH . E 5 HOH A 87 587 25 HOH HOH . E 5 HOH A 88 588 81 HOH HOH . E 5 HOH A 89 589 82 HOH HOH . E 5 HOH A 90 590 89 HOH HOH . E 5 HOH A 91 591 72 HOH HOH . E 5 HOH A 92 592 47 HOH HOH . E 5 HOH A 93 593 84 HOH HOH . E 5 HOH A 94 594 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1U EPU . . . D 4 -0.608 -8.165 35.497 1 22.89 ? N1U EPU 403 A 1 HETATM 2 C C2U EPU . . . D 4 -0.693 -8.405 36.976 1 24.03 ? C2U EPU 403 A 1 HETATM 3 N N3U EPU . . . D 4 0.566 -8.562 37.782 1 24.59 ? N3U EPU 403 A 1 HETATM 4 C C4U EPU . . . D 4 1.867 -8.485 37.123 1 21.27 ? C4U EPU 403 A 1 HETATM 5 C C5U EPU . . . D 4 1.944 -8.249 35.644 1 18.35 ? C5U EPU 403 A 1 HETATM 6 C C6U EPU . . . D 4 0.7 -8.1 34.849 1 29.17 ? C6U EPU 403 A 1 HETATM 7 O O2U EPU . . . D 4 -1.746 -8.468 37.515 1 21.44 ? O2U EPU 403 A 1 HETATM 8 O O4U EPU . . . D 4 2.853 -8.613 37.764 1 27.38 ? O4U EPU 403 A 1 HETATM 9 C C1D EPU . . . D 4 -1.806 -8.028 34.744 1 21.58 ? C1D EPU 403 A 1 HETATM 10 C C2D EPU . . . D 4 -1.959 -6.792 34.252 1 31.18 ? C2D EPU 403 A 1 HETATM 11 O O2D EPU . . . D 4 -2.785 -6.003 35.148 1 29.99 ? O2D EPU 403 A 1 HETATM 12 C C3D EPU . . . D 4 -2.7 -7.011 32.906 1 29.71 ? C3D EPU 403 A 1 HETATM 13 C C4D EPU . . . D 4 -2.183 -8.421 32.401 1 17.69 ? C4D EPU 403 A 1 HETATM 14 O O4D EPU . . . D 4 -1.745 -9.064 33.462 1 19.35 ? O4D EPU 403 A 1 HETATM 15 O O3D EPU . . . D 4 -4.014 -7.04 33.108 1 26.19 ? O3D EPU 403 A 1 HETATM 16 C C5D EPU . . . D 4 -1.03 -8.268 31.42 1 23.87 ? C5D EPU 403 A 1 HETATM 17 O O5D EPU . . . D 4 -0.314 -7.096 31.695 1 30.43 ? O5D EPU 403 A 1 HETATM 18 P PA EPU . . . D 4 0.108 -6.223 30.332 1 34.16 ? PA EPU 403 A 1 HETATM 19 O O1A EPU . . . D 4 -1.081 -5.403 29.86 1 46.75 ? O1A EPU 403 A 1 HETATM 20 O O2A EPU . . . D 4 1.293 -5.324 30.622 1 37.5 ? O2A EPU 403 A 1 HETATM 21 O O3A EPU . . . D 4 0.492 -7.366 29.18 1 44.49 ? O3A EPU 403 A 1 HETATM 22 P PB EPU . . . D 4 1.975 -8.154 29.127 1 30.85 ? PB EPU 403 A 1 HETATM 23 O O1B EPU . . . D 4 1.822 -9.53 28.493 1 28.81 ? O1B EPU 403 A 1 HETATM 24 O O2B EPU . . . D 4 2.56 -8.28 30.507 1 22.63 ? O2B EPU 403 A 1 HETATM 25 C C1 EPU . . . D 4 2.724 -7.295 26.825 1 32.34 ? C1 EPU 403 A 1 HETATM 26 C C2 EPU . . . D 4 3.988 -6.757 26.164 1 42.5 ? C2 EPU 403 A 1 HETATM 27 C C3 EPU . . . D 4 4.188 -5.345 26.502 1 38.7 ? C3 EPU 403 A 1 HETATM 28 C C4 EPU . . . D 4 3.007 -4.507 26.127 1 35.61 ? C4 EPU 403 A 1 HETATM 29 C C5 EPU . . . D 4 1.622 -5.083 26.523 1 27.56 ? C5 EPU 403 A 1 HETATM 30 C C6 EPU . . . D 4 0.573 -4.56 25.568 1 31.32 ? C6 EPU 403 A 1 HETATM 31 C C7 EPU . . . D 4 5.501 -8.835 26.003 1 32.11 ? C7 EPU 403 A 1 HETATM 32 C C8 EPU . . . D 4 6.532 -9.755 26.655 1 35.24 ? C8 EPU 403 A 1 HETATM 33 N N2 EPU . . . D 4 5.023 -7.65 26.76 1 40.32 ? N2 EPU 403 A 1 HETATM 34 O O1 EPU . . . D 4 2.958 -7.232 28.159 1 26.7 ? O1 EPU 403 A 1 HETATM 35 O O3 EPU . . . D 4 5.336 -4.84 25.716 1 38.96 ? O3 EPU 403 A 1 HETATM 36 O O4 EPU . . . D 4 3.143 -3.252 26.765 1 29.51 ? O4 EPU 403 A 1 HETATM 37 O O5 EPU . . . D 4 1.492 -6.541 26.467 1 40.27 ? O5 EPU 403 A 1 HETATM 38 O O6 EPU . . . D 4 -0.212 -3.582 26.211 1 43.24 ? O6 EPU 403 A 1 HETATM 39 O O7 EPU . . . D 4 5.092 -9.062 24.906 1 34.16 ? O7 EPU 403 A 1 HETATM 40 C C1E EPU . . . D 4 7.847 -4.454 25.855 1 39.74 ? C1E EPU 403 A 1 HETATM 41 O O1E EPU . . . D 4 7.986 -5.111 24.782 1 35.69 ? O1E EPU 403 A 1 HETATM 42 O O2E EPU . . . D 4 8.857 -3.995 26.453 1 40.96 ? O2E EPU 403 A 1 HETATM 43 C C2E EPU . . . D 4 6.441 -4.236 26.428 1 40.88 ? C2E EPU 403 A 1 HETATM 44 C C3E EPU . . . D 4 6.269 -3.498 27.542 1 32.54 ? C3E EPU 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #