data_9DW9 # _model_server_result.job_id t3OHMxlEAUAQQpe2oH3AWQ _model_server_result.datetime_utc '2024-11-28 09:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1501}' # _entry.id 9DW9 # _exptl.entry_id 9DW9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DW9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 812 A LEU 812 1_555 A N SEP 813 A SEP 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 813 A SEP 813 1_555 A N GLN 814 A GLN 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C TRP 197 G TRP 197 1_555 B N TPO 198 G TPO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C TPO 198 G TPO 198 1_555 B N LEU 199 G LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 E MG MG . A MG 1503 1_555 G O2B ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 E MG MG . A MG 1503 1_555 G O3G ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 F MG MG . A MG 1504 1_555 H O3G ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 F MG MG . A MG 1504 1_555 H O2B ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B OD1 ASN 172 G ASN 172 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 B OD1 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc13 B OD2 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc14 B OD2 ASP 185 G ASP 185 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc15 S O3G ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc16 S O2B ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 S O2G ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc18 S O2A ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 119 n n C1 C10 CLR sing 120 n n C1 H11 CLR sing 121 n n C1 H12 CLR sing 122 n n C2 C3 CLR sing 123 n n C2 H21 CLR sing 124 n n C2 H22 CLR sing 125 n n C3 C4 CLR sing 126 n n C3 O1 CLR sing 127 n n C3 H3 CLR sing 128 n n C4 C5 CLR sing 129 n n C4 H41 CLR sing 130 n n C4 H42 CLR sing 131 n n C5 C6 CLR doub 132 n n C5 C10 CLR sing 133 n n C6 C7 CLR sing 134 n n C6 H6 CLR sing 135 n n C7 C8 CLR sing 136 n n C7 H71 CLR sing 137 n n C7 H72 CLR sing 138 n n C8 C9 CLR sing 139 n n C8 C14 CLR sing 140 n n C8 H8 CLR sing 141 n n C9 C10 CLR sing 142 n n C9 C11 CLR sing 143 n n C9 H9 CLR sing 144 n n C10 C19 CLR sing 145 n n C11 C12 CLR sing 146 n n C11 H111 CLR sing 147 n n C11 H112 CLR sing 148 n n C12 C13 CLR sing 149 n n C12 H121 CLR sing 150 n n C12 H122 CLR sing 151 n n C13 C14 CLR sing 152 n n C13 C17 CLR sing 153 n n C13 C18 CLR sing 154 n n C14 C15 CLR sing 155 n n C14 H14 CLR sing 156 n n C15 C16 CLR sing 157 n n C15 H151 CLR sing 158 n n C15 H152 CLR sing 159 n n C16 C17 CLR sing 160 n n C16 H161 CLR sing 161 n n C16 H162 CLR sing 162 n n C17 C20 CLR sing 163 n n C17 H17 CLR sing 164 n n C18 H181 CLR sing 165 n n C18 H182 CLR sing 166 n n C18 H183 CLR sing 167 n n C19 H191 CLR sing 168 n n C19 H192 CLR sing 169 n n C19 H193 CLR sing 170 n n C20 C21 CLR sing 171 n n C20 C22 CLR sing 172 n n C20 H20 CLR sing 173 n n C21 H211 CLR sing 174 n n C21 H212 CLR sing 175 n n C21 H213 CLR sing 176 n n C22 C23 CLR sing 177 n n C22 H221 CLR sing 178 n n C22 H222 CLR sing 179 n n C23 C24 CLR sing 180 n n C23 H231 CLR sing 181 n n C23 H232 CLR sing 182 n n C24 C25 CLR sing 183 n n C24 H241 CLR sing 184 n n C24 H242 CLR sing 185 n n C25 C26 CLR sing 186 n n C25 C27 CLR sing 187 n n C25 H25 CLR sing 188 n n C26 H261 CLR sing 189 n n C26 H262 CLR sing 190 n n C26 H263 CLR sing 191 n n C27 H271 CLR sing 192 n n C27 H272 CLR sing 193 n n C27 H273 CLR sing 194 n n O1 H1 CLR sing 195 n n # _atom_sites.entry_id 9DW9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 1501 1501 CLR CLR . D 4 D10 A 1 1502 1701 D10 POV . E 5 MG A 1 1503 1 MG MG . F 5 MG A 1 1504 2 MG MG . G 6 ATP A 1 1505 3 ATP ATP . H 6 ATP A 1 1506 4 ATP ATP . I 7 CL A 1 1507 1 CL CL . J 7 CL A 1 1508 2 CL CL . K 7 CL A 1 1509 3 CL CL . L 7 CL A 1 1510 4 CL CL . M 8 UND A 1 1511 1509 UND POV . N 8 UND A 1 1512 1510 UND POV . O 8 UND A 1 1513 1511 UND POV . P 4 D10 A 1 1514 1512 D10 POV . Q 4 D10 A 1 1515 1513 D10 POV . R 4 D10 A 1 1516 1514 D10 POV . S 6 ATP G 1 401 401 ATP ATP . T 5 MG G 1 402 1 MG MG . U 5 MG G 1 403 2 MG MG . V 9 HOH A 1 1601 2 HOH HOH . V 9 HOH A 2 1602 1 HOH HOH . V 9 HOH A 3 1603 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . C 3 140.923 125.221 179.956 1 44.81 ? C1 CLR 1501 A 1 HETATM 2 C C2 CLR . . . C 3 140.811 125.185 181.48 1 41.63 ? C2 CLR 1501 A 1 HETATM 3 C C3 CLR . . . C 3 141.966 125.926 182.113 1 43.72 ? C3 CLR 1501 A 1 HETATM 4 C C4 CLR . . . C 3 141.988 127.364 181.634 1 48.36 ? C4 CLR 1501 A 1 HETATM 5 C C5 CLR . . . C 3 141.983 127.469 180.126 1 45.36 ? C5 CLR 1501 A 1 HETATM 6 C C6 CLR . . . C 3 142.846 128.255 179.503 1 45.35 ? C6 CLR 1501 A 1 HETATM 7 C C7 CLR . . . C 3 142.932 128.434 178.02 1 43.31 ? C7 CLR 1501 A 1 HETATM 8 C C8 CLR . . . C 3 141.681 127.945 177.3 1 44.3 ? C8 CLR 1501 A 1 HETATM 9 C C9 CLR . . . C 3 141.243 126.59 177.872 1 46.02 ? C9 CLR 1501 A 1 HETATM 10 C C10 CLR . . . C 3 140.922 126.652 179.394 1 44.66 ? C10 CLR 1501 A 1 HETATM 11 C C11 CLR . . . C 3 140.112 125.954 177.051 1 43.3 ? C11 CLR 1501 A 1 HETATM 12 C C12 CLR . . . C 3 140.393 125.914 175.548 1 40.9 ? C12 CLR 1501 A 1 HETATM 13 C C13 CLR . . . C 3 140.728 127.305 174.992 1 47.42 ? C13 CLR 1501 A 1 HETATM 14 C C14 CLR . . . C 3 141.943 127.805 175.8 1 43.29 ? C14 CLR 1501 A 1 HETATM 15 C C15 CLR . . . C 3 142.436 129.022 175.006 1 47.75 ? C15 CLR 1501 A 1 HETATM 16 C C16 CLR . . . C 3 142.117 128.684 173.541 1 48.89 ? C16 CLR 1501 A 1 HETATM 17 C C17 CLR . . . C 3 141.308 127.372 173.559 1 41.44 ? C17 CLR 1501 A 1 HETATM 18 C C18 CLR . . . C 3 139.521 128.246 175.145 1 49.82 ? C18 CLR 1501 A 1 HETATM 19 C C19 CLR . . . C 3 139.549 127.299 179.658 1 45.24 ? C19 CLR 1501 A 1 HETATM 20 C C20 CLR . . . C 3 140.355 127.275 172.352 1 45.11 ? C20 CLR 1501 A 1 HETATM 21 C C21 CLR . . . C 3 139.715 125.9 172.183 1 45.95 ? C21 CLR 1501 A 1 HETATM 22 C C22 CLR . . . C 3 141.081 127.698 171.064 1 38.91 ? C22 CLR 1501 A 1 HETATM 23 C C23 CLR . . . C 3 142.076 126.689 170.514 1 42.95 ? C23 CLR 1501 A 1 HETATM 24 C C24 CLR . . . C 3 143.057 127.311 169.53 1 45.3 ? C24 CLR 1501 A 1 HETATM 25 C C25 CLR . . . C 3 142.454 128.166 168.428 1 42.59 ? C25 CLR 1501 A 1 HETATM 26 C C26 CLR . . . C 3 143.536 128.84 167.604 1 45.45 ? C26 CLR 1501 A 1 HETATM 27 C C27 CLR . . . C 3 141.526 127.368 167.532 1 49.79 ? C27 CLR 1501 A 1 HETATM 28 O O1 CLR . . . C 3 141.857 125.892 183.537 1 45.61 ? O1 CLR 1501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #