data_9DW9 # _model_server_result.job_id OAd_8OkoAKlZ8W-DL9LTTw _model_server_result.datetime_utc '2024-11-28 09:47:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1504}' # _entry.id 9DW9 # _exptl.entry_id 9DW9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DW9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 T N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 812 A LEU 812 1_555 A N SEP 813 A SEP 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 813 A SEP 813 1_555 A N GLN 814 A GLN 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C TRP 197 G TRP 197 1_555 B N TPO 198 G TPO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C TPO 198 G TPO 198 1_555 B N LEU 199 G LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 E MG MG . A MG 1503 1_555 G O2B ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 E MG MG . A MG 1503 1_555 G O3G ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 F MG MG . A MG 1504 1_555 H O3G ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 F MG MG . A MG 1504 1_555 H O2B ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B OD1 ASN 172 G ASN 172 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 B OD1 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc13 B OD2 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc14 B OD2 ASP 185 G ASP 185 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc15 S O3G ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc16 S O2B ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 S O2G ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc18 S O2A ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9DW9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 1501 1501 CLR CLR . D 4 D10 A 1 1502 1701 D10 POV . E 5 MG A 1 1503 1 MG MG . F 5 MG A 1 1504 2 MG MG . G 6 ATP A 1 1505 3 ATP ATP . H 6 ATP A 1 1506 4 ATP ATP . I 7 CL A 1 1507 1 CL CL . J 7 CL A 1 1508 2 CL CL . K 7 CL A 1 1509 3 CL CL . L 7 CL A 1 1510 4 CL CL . M 8 UND A 1 1511 1509 UND POV . N 8 UND A 1 1512 1510 UND POV . O 8 UND A 1 1513 1511 UND POV . P 4 D10 A 1 1514 1512 D10 POV . Q 4 D10 A 1 1515 1513 D10 POV . R 4 D10 A 1 1516 1514 D10 POV . S 6 ATP G 1 401 401 ATP ATP . T 5 MG G 1 402 1 MG MG . U 5 MG G 1 403 2 MG MG . V 9 HOH A 1 1601 2 HOH HOH . V 9 HOH A 2 1602 1 HOH HOH . V 9 HOH A 3 1603 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 156.949 _atom_site.Cartn_y 178.166 _atom_site.Cartn_z 110.651 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #