data_9DW9 # _model_server_result.job_id LMiWpPQS0RBCjr78Z4x4aA _model_server_result.datetime_utc '2024-11-28 09:43:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1506}' # _entry.id 9DW9 # _exptl.entry_id 9DW9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DW9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 812 A LEU 812 1_555 A N SEP 813 A SEP 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 813 A SEP 813 1_555 A N GLN 814 A GLN 814 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C TRP 197 G TRP 197 1_555 B N TPO 198 G TPO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C TPO 198 G TPO 198 1_555 B N LEU 199 G LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 465 A THR 465 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc2 A OE1 GLN 493 A GLN 493 1_555 E MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 A OG SER 1251 A SER 1251 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc4 A OE1 GLN 1291 A GLN 1291 1_555 F MG MG . A MG 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc5 E MG MG . A MG 1503 1_555 G O2B ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 E MG MG . A MG 1503 1_555 G O3G ATP . A ATP 1505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc8 E MG MG . A MG 1503 1_555 V O HOH . A HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 F MG MG . A MG 1504 1_555 H O3G ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 F MG MG . A MG 1504 1_555 H O2B ATP . A ATP 1506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B OD1 ASN 172 G ASN 172 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 B OD1 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc13 B OD2 ASP 185 G ASP 185 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc14 B OD2 ASP 185 G ASP 185 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc15 S O3G ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc16 S O2B ATP . G ATP 401 1_555 T MG MG . G MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc17 S O2G ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc18 S O2A ATP . G ATP 401 1_555 U MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 9DW9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CLR A 1 1501 1501 CLR CLR . D 4 D10 A 1 1502 1701 D10 POV . E 5 MG A 1 1503 1 MG MG . F 5 MG A 1 1504 2 MG MG . G 6 ATP A 1 1505 3 ATP ATP . H 6 ATP A 1 1506 4 ATP ATP . I 7 CL A 1 1507 1 CL CL . J 7 CL A 1 1508 2 CL CL . K 7 CL A 1 1509 3 CL CL . L 7 CL A 1 1510 4 CL CL . M 8 UND A 1 1511 1509 UND POV . N 8 UND A 1 1512 1510 UND POV . O 8 UND A 1 1513 1511 UND POV . P 4 D10 A 1 1514 1512 D10 POV . Q 4 D10 A 1 1515 1513 D10 POV . R 4 D10 A 1 1516 1514 D10 POV . S 6 ATP G 1 401 401 ATP ATP . T 5 MG G 1 402 1 MG MG . U 5 MG G 1 403 2 MG MG . V 9 HOH A 1 1601 2 HOH HOH . V 9 HOH A 2 1602 1 HOH HOH . V 9 HOH A 3 1603 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . H 6 158.721 175.881 108.288 1 32.12 ? PG ATP 1506 A 1 HETATM 2 O O1G ATP . . . H 6 158.537 176.403 106.912 1 30.76 ? O1G ATP 1506 A 1 HETATM 3 O O2G ATP . . . H 6 159.017 174.398 108.337 1 32.82 ? O2G ATP 1506 A 1 HETATM 4 O O3G ATP . . . H 6 157.555 176.179 109.218 1 38.42 ? O3G ATP 1506 A 1 HETATM 5 P PB ATP . . . H 6 160.485 178.011 109.423 1 29.2 ? PB ATP 1506 A 1 HETATM 6 O O1B ATP . . . H 6 160.984 178.782 108.273 1 31.59 ? O1B ATP 1506 A 1 HETATM 7 O O2B ATP . . . H 6 159.356 178.648 110.222 1 35.97 ? O2B ATP 1506 A 1 HETATM 8 O O3B ATP . . . H 6 159.98 176.571 108.99 1 35.65 ? O3B ATP 1506 A 1 HETATM 9 P PA ATP . . . H 6 161.832 177.558 112.016 1 27.54 ? PA ATP 1506 A 1 HETATM 10 O O1A ATP . . . H 6 162.023 178.872 112.661 1 33.48 ? O1A ATP 1506 A 1 HETATM 11 O O2A ATP . . . H 6 160.663 176.742 112.551 1 31.28 ? O2A ATP 1506 A 1 HETATM 12 O O3A ATP . . . H 6 161.657 177.674 110.445 1 26.52 ? O3A ATP 1506 A 1 HETATM 13 O O5' ATP . . . H 6 163.155 176.708 112.154 1 35.22 ? O5' ATP 1506 A 1 HETATM 14 C C5' ATP . . . H 6 164.451 177.288 111.893 1 32.55 ? C5' ATP 1506 A 1 HETATM 15 C C4' ATP . . . H 6 165.481 176.45 112.605 1 32.48 ? C4' ATP 1506 A 1 HETATM 16 O O4' ATP . . . H 6 165.252 176.531 114.026 1 38.92 ? O4' ATP 1506 A 1 HETATM 17 C C3' ATP . . . H 6 165.469 174.964 112.235 1 32.01 ? C3' ATP 1506 A 1 HETATM 18 O O3' ATP . . . H 6 166.758 174.52 111.83 1 37.61 ? O3' ATP 1506 A 1 HETATM 19 C C2' ATP . . . H 6 164.998 174.264 113.516 1 33.32 ? C2' ATP 1506 A 1 HETATM 20 O O2' ATP . . . H 6 165.661 173.019 113.691 1 34.81 ? O2' ATP 1506 A 1 HETATM 21 C C1' ATP . . . H 6 165.419 175.256 114.596 1 33.99 ? C1' ATP 1506 A 1 HETATM 22 N N9 ATP . . . H 6 164.604 175.192 115.802 1 33.12 ? N9 ATP 1506 A 1 HETATM 23 C C8 ATP . . . H 6 163.264 175.46 115.908 1 32.47 ? C8 ATP 1506 A 1 HETATM 24 N N7 ATP . . . H 6 162.785 175.32 117.119 1 32.79 ? N7 ATP 1506 A 1 HETATM 25 C C5 ATP . . . H 6 163.888 174.936 117.865 1 34.87 ? C5 ATP 1506 A 1 HETATM 26 C C6 ATP . . . H 6 164.052 174.629 119.229 1 35.35 ? C6 ATP 1506 A 1 HETATM 27 N N6 ATP . . . H 6 163.06 174.662 120.124 1 36.99 ? N6 ATP 1506 A 1 HETATM 28 N N1 ATP . . . H 6 165.286 174.281 119.651 1 36.47 ? N1 ATP 1506 A 1 HETATM 29 C C2 ATP . . . H 6 166.282 174.245 118.763 1 36.5 ? C2 ATP 1506 A 1 HETATM 30 N N3 ATP . . . H 6 166.248 174.513 117.457 1 36.08 ? N3 ATP 1506 A 1 HETATM 31 C C4 ATP . . . H 6 165.016 174.853 117.066 1 35.59 ? C4 ATP 1506 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #