data_9DXA # _model_server_result.job_id CiyAtftOuw04Z-FiO3UelQ _model_server_result.datetime_utc '2024-12-26 17:12:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9dxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":901}' # _entry.id 9DXA # _exptl.entry_id 9DXA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9DXA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9DXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 402 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 205 A CYS 113 1_555 A SG CYS 387 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 54 B CYS 54 1_555 B SG CYS 402 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 205 B CYS 113 1_555 B SG CYS 387 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 C SG CYS 54 C CYS 54 1_555 C SG CYS 402 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 57 C CYS 57 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 C SG CYS 205 C CYS 113 1_555 C SG CYS 387 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 54 D CYS 54 1_555 D SG CYS 402 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 D SG CYS 57 D CYS 57 1_555 D SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 D SG CYS 205 D CYS 113 1_555 D SG CYS 387 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 E SG CYS 54 E CYS 54 1_555 E SG CYS 355 E CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 E SG CYS 154 E CYS 154 1_555 E SG CYS 340 E CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 F SG CYS 54 F CYS 54 1_555 F SG CYS 355 F CYS 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 F SG CYS 154 F CYS 154 1_555 F SG CYS 340 F CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C5 PEE sing 235 n n C5 C4 PEE sing 236 n n C4 O4P PEE sing 237 n n O4P P PEE sing 238 n n O1P P PEE doub 239 n n C1 O3P PEE sing 240 n n C1 C2 PEE sing 241 n n O3P P PEE sing 242 n n P O2P PEE sing 243 n n C2 C3 PEE sing 244 n n C2 O2 PEE sing 245 n n C3 O3 PEE sing 246 n n O2 C10 PEE sing 247 n n C31 C30 PEE sing 248 n n C31 C32 PEE sing 249 n n C33 C32 PEE sing 250 n n C33 C34 PEE sing 251 n n C30 O3 PEE sing 252 n n C30 O5 PEE doub 253 n n C10 O4 PEE doub 254 n n C10 C11 PEE sing 255 n n C34 C35 PEE sing 256 n n C11 C12 PEE sing 257 n n C35 C36 PEE sing 258 n n C36 C37 PEE sing 259 n n C37 C38 PEE sing 260 n n C38 C39 PEE doub 261 z n C12 C13 PEE sing 262 n n C39 C40 PEE sing 263 n n C13 C14 PEE sing 264 n n C14 C15 PEE sing 265 n n C40 C41 PEE sing 266 n n C15 C16 PEE sing 267 n n C41 C42 PEE sing 268 n n C16 C17 PEE sing 269 n n C42 C43 PEE sing 270 n n C17 C18 PEE sing 271 n n C43 C44 PEE sing 272 n n C18 C19 PEE doub 273 z n C46 C47 PEE sing 274 n n C46 C45 PEE sing 275 n n C44 C45 PEE sing 276 n n C19 C20 PEE sing 277 n n C20 C21 PEE sing 278 n n C21 C22 PEE sing 279 n n C22 C23 PEE sing 280 n n C23 C24 PEE sing 281 n n C24 C25 PEE sing 282 n n C26 C25 PEE sing 283 n n C26 C27 PEE sing 284 n n C27 H7 PEE sing 285 n n C27 H8 PEE sing 286 n n C27 H82 PEE sing 287 n n C26 H5 PEE sing 288 n n C26 H6 PEE sing 289 n n C25 H12 PEE sing 290 n n C25 H4 PEE sing 291 n n C24 H10 PEE sing 292 n n C24 H11 PEE sing 293 n n C23 H83 PEE sing 294 n n C23 H9 PEE sing 295 n n C22 H2 PEE sing 296 n n C22 H3 PEE sing 297 n n C21 H14 PEE sing 298 n n C21 H1 PEE sing 299 n n C20 H16 PEE sing 300 n n C20 H13 PEE sing 301 n n C19 H18 PEE sing 302 n n C18 H20 PEE sing 303 n n C17 H22 PEE sing 304 n n C17 H19 PEE sing 305 n n C16 H21 PEE sing 306 n n C16 H28 PEE sing 307 n n C15 H23 PEE sing 308 n n C15 H24 PEE sing 309 n n C14 H25 PEE sing 310 n n C14 H26 PEE sing 311 n n C13 H17 PEE sing 312 n n C13 H27 PEE sing 313 n n C12 H15 PEE sing 314 n n C12 H29 PEE sing 315 n n C11 H30 PEE sing 316 n n C11 H31 PEE sing 317 n n C2 H32 PEE sing 318 n n C1 H33 PEE sing 319 n n C1 H34 PEE sing 320 n n O2P H35 PEE sing 321 n n C4 H36 PEE sing 322 n n C4 H37 PEE sing 323 n n C5 H38 PEE sing 324 n n C5 H39 PEE sing 325 n n N H40 PEE sing 326 n n N H41 PEE sing 327 n n C3 H43 PEE sing 328 n n C3 H44 PEE sing 329 n n C31 H45 PEE sing 330 n n C31 H46 PEE sing 331 n n C32 H47 PEE sing 332 n n C32 H48 PEE sing 333 n n C33 H49 PEE sing 334 n n C33 H50 PEE sing 335 n n C34 H51 PEE sing 336 n n C34 H52 PEE sing 337 n n C35 H53 PEE sing 338 n n C35 H54 PEE sing 339 n n C36 H55 PEE sing 340 n n C36 H56 PEE sing 341 n n C37 H57 PEE sing 342 n n C37 H58 PEE sing 343 n n C38 H59 PEE sing 344 n n C39 H60 PEE sing 345 n n C40 H81 PEE sing 346 n n C40 H61 PEE sing 347 n n C41 H80 PEE sing 348 n n C41 H62 PEE sing 349 n n C42 H63 PEE sing 350 n n C42 H64 PEE sing 351 n n C43 H65 PEE sing 352 n n C43 H66 PEE sing 353 n n C44 H67 PEE sing 354 n n C44 H68 PEE sing 355 n n C45 H69 PEE sing 356 n n C45 H70 PEE sing 357 n n C46 H71 PEE sing 358 n n C46 H72 PEE sing 359 n n C47 H73 PEE sing 360 n n C47 H74 PEE sing 361 n n C47 H75 PEE sing 362 n n # _atom_sites.entry_id 9DXA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PEE A 1 901 900 PEE PEE . H 3 PEE A 1 902 903 PEE PEE . I 3 PEE A 1 903 916 PEE PEE . J 3 PEE A 1 904 917 PEE PEE . K 3 PEE B 1 901 904 PEE PEE . L 3 PEE B 1 902 905 PEE PEE . M 3 PEE B 1 903 906 PEE PEE . N 3 PEE C 1 901 907 PEE PEE . O 3 PEE C 1 902 908 PEE PEE . P 3 PEE C 1 903 909 PEE PEE . Q 3 PEE D 1 901 901 PEE PEE . R 3 PEE D 1 902 910 PEE PEE . S 3 PEE D 1 903 911 PEE PEE . T 3 PEE E 1 901 912 PEE PEE . U 3 PEE E 1 902 913 PEE PEE . V 3 PEE F 1 901 902 PEE PEE . W 3 PEE F 1 902 914 PEE PEE . X 3 PEE F 1 903 915 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . G 3 219.628 226.837 203.456 1 84.52 ? C27 PEE 901 A 1 HETATM 2 C C26 PEE . . . G 3 218.764 226.99 202.228 1 80.81 ? C26 PEE 901 A 1 HETATM 3 C C25 PEE . . . G 3 219.508 226.814 200.929 1 83.1 ? C25 PEE 901 A 1 HETATM 4 C C24 PEE . . . G 3 218.639 226.96 199.704 1 91.24 ? C24 PEE 901 A 1 HETATM 5 C C23 PEE . . . G 3 219.365 226.767 198.395 1 90.21 ? C23 PEE 901 A 1 HETATM 6 C C22 PEE . . . G 3 218.481 226.881 197.175 1 86.48 ? C22 PEE 901 A 1 HETATM 7 C C21 PEE . . . G 3 219.206 226.665 195.859 1 85.84 ? C21 PEE 901 A 1 HETATM 8 C C20 PEE . . . G 3 219.873 225.33 195.737 1 90.35 ? C20 PEE 901 A 1 HETATM 9 C C19 PEE . . . G 3 218.916 224.179 195.721 1 89 ? C19 PEE 901 A 1 HETATM 10 C C18 PEE . . . G 3 219.254 222.914 195.744 1 90.48 ? C18 PEE 901 A 1 HETATM 11 C C17 PEE . . . G 3 220.654 222.388 195.812 1 88.61 ? C17 PEE 901 A 1 HETATM 12 C C16 PEE . . . G 3 221.007 221.462 194.687 1 90.42 ? C16 PEE 901 A 1 HETATM 13 C C15 PEE . . . G 3 220.179 220.185 194.635 1 90.47 ? C15 PEE 901 A 1 HETATM 14 C C14 PEE . . . G 3 220.582 219.227 193.538 1 87.41 ? C14 PEE 901 A 1 HETATM 15 C C13 PEE . . . G 3 220.606 219.848 192.165 1 87.65 ? C13 PEE 901 A 1 HETATM 16 C C12 PEE . . . G 3 220.881 218.885 191.022 1 87.54 ? C12 PEE 901 A 1 HETATM 17 C C11 PEE . . . G 3 219.835 217.821 190.903 1 87.66 ? C11 PEE 901 A 1 HETATM 18 C C10 PEE . . . G 3 219.606 217.356 189.49 1 92.61 ? C10 PEE 901 A 1 HETATM 19 O O4 PEE . . . G 3 218.553 217.469 188.921 1 97.58 ? O4 PEE 901 A 1 HETATM 20 O O2 PEE . . . G 3 220.681 216.798 188.908 1 91.39 ? O2 PEE 901 A 1 HETATM 21 C C2 PEE . . . G 3 220.558 216.336 187.532 1 90.71 ? C2 PEE 901 A 1 HETATM 22 C C1 PEE . . . G 3 220.628 217.497 186.564 1 87.17 ? C1 PEE 901 A 1 HETATM 23 O O3P PEE . . . G 3 220.291 217.029 185.228 1 87.03 ? O3P PEE 901 A 1 HETATM 24 P P PEE . . . G 3 220.764 217.881 183.951 1 105.02 ? P PEE 901 A 1 HETATM 25 O O2P PEE . . . G 3 222.268 217.845 183.934 1 93.96 ? O2P PEE 901 A 1 HETATM 26 O O1P PEE . . . G 3 219.984 217.384 182.765 1 93.37 ? O1P PEE 901 A 1 HETATM 27 O O4P PEE . . . G 3 220.256 219.367 184.292 1 94.87 ? O4P PEE 901 A 1 HETATM 28 C C4 PEE . . . G 3 220.243 220.383 183.248 1 85.96 ? C4 PEE 901 A 1 HETATM 29 C C5 PEE . . . G 3 221.637 220.728 182.794 1 85.35 ? C5 PEE 901 A 1 HETATM 30 N N PEE . . . G 3 221.633 221.758 181.754 1 85.74 ? N PEE 901 A 1 HETATM 31 C C3 PEE . . . G 3 221.599 215.273 187.262 1 89.33 ? C3 PEE 901 A 1 HETATM 32 O O3 PEE . . . G 3 221.463 214.224 188.244 1 89.21 ? O3 PEE 901 A 1 HETATM 33 C C30 PEE . . . G 3 222.314 213.209 188.138 1 89.42 ? C30 PEE 901 A 1 HETATM 34 O O5 PEE . . . G 3 223.159 213.143 187.284 1 89.69 ? O5 PEE 901 A 1 HETATM 35 C C31 PEE . . . G 3 222.082 212.177 189.207 1 88.79 ? C31 PEE 901 A 1 HETATM 36 C C32 PEE . . . G 3 221.071 212.587 190.236 1 88.28 ? C32 PEE 901 A 1 HETATM 37 C C33 PEE . . . G 3 221.69 213.174 191.499 1 89.14 ? C33 PEE 901 A 1 HETATM 38 C C34 PEE . . . G 3 222.397 214.502 191.331 1 91.85 ? C34 PEE 901 A 1 HETATM 39 C C35 PEE . . . G 3 223.905 214.412 191.269 1 90.46 ? C35 PEE 901 A 1 HETATM 40 C C36 PEE . . . G 3 224.539 213.764 192.493 1 86.32 ? C36 PEE 901 A 1 HETATM 41 C C37 PEE . . . G 3 224.241 214.461 193.783 1 84.23 ? C37 PEE 901 A 1 HETATM 42 C C38 PEE . . . G 3 224.721 213.703 194.981 1 88.83 ? C38 PEE 901 A 1 HETATM 43 C C39 PEE . . . G 3 225.53 214.136 195.912 1 88.9 ? C39 PEE 901 A 1 HETATM 44 C C40 PEE . . . G 3 226.148 215.496 195.998 1 88.73 ? C40 PEE 901 A 1 HETATM 45 C C41 PEE . . . G 3 227.644 215.461 195.992 1 86.44 ? C41 PEE 901 A 1 HETATM 46 C C42 PEE . . . G 3 228.295 216.801 196.284 1 86.54 ? C42 PEE 901 A 1 HETATM 47 C C43 PEE . . . G 3 227.949 217.367 197.639 1 89.12 ? C43 PEE 901 A 1 HETATM 48 C C44 PEE . . . G 3 228.599 218.693 197.94 1 87.04 ? C44 PEE 901 A 1 HETATM 49 C C45 PEE . . . G 3 230.106 218.662 197.911 1 87.6 ? C45 PEE 901 A 1 HETATM 50 C C46 PEE . . . G 3 230.754 219.989 198.201 1 88.25 ? C46 PEE 901 A 1 HETATM 51 C C47 PEE . . . G 3 232.261 219.946 198.155 1 88.67 ? C47 PEE 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #